{"id":"https://openalex.org/W4414110858","doi":"https://doi.org/10.1371/journal.pcbi.1013453","title":"Catalyzing computational biology research at an academic institute through an interest network","display_name":"Catalyzing computational biology research at an academic institute through an interest network","publication_year":2025,"publication_date":"2025-09-10","ids":{"openalex":"https://openalex.org/W4414110858","doi":"https://doi.org/10.1371/journal.pcbi.1013453","pmid":"https://pubmed.ncbi.nlm.nih.gov/40929173"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1013453","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1013453","pdf_url":"https://curated-unify.zendy.io/wp-content/uploads/2025/03/AI-in-Research-Survey-Report.pdf","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://curated-unify.zendy.io/wp-content/uploads/2025/03/AI-in-Research-Survey-Report.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5023273202","display_name":"Jaroslav \u017d\u00e1k","orcid":"https://orcid.org/0000-0002-8135-856X"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]},{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]},{"id":"https://openalex.org/I2801159745","display_name":"Huntsman Cancer Institute","ror":"https://ror.org/03v7tx966","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2801159745","https://openalex.org/I4210148268"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jaroslav Zak","raw_affiliation_strings":["Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, California, United States of America","Department of Radiation Oncology, University of Utah School of Medicine, Salt Lake City, Utah, United States of America","Huntsman Cancer Institute, University of Utah School of Medicine, Salt Lake City, Utah, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-8135-856X","affiliations":[{"raw_affiliation_string":"Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, California, United States of America","institution_ids":["https://openalex.org/I123431417"]},{"raw_affiliation_string":"Department of Radiation Oncology, University of Utah School of Medicine, Salt Lake City, Utah, United States of America","institution_ids":["https://openalex.org/I223532165"]},{"raw_affiliation_string":"Huntsman Cancer Institute, University of Utah School of Medicine, Salt Lake City, Utah, United States of America","institution_ids":["https://openalex.org/I223532165","https://openalex.org/I2801159745"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113974071","display_name":"Ian Newman","orcid":"https://orcid.org/0000-0002-0671-8668"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ian Newman","raw_affiliation_strings":["Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, California, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-0671-8668","affiliations":[{"raw_affiliation_string":"Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, California, United States of America","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008014042","display_name":"Dava J. Garcia","orcid":null},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniel J. Montiel Garcia","raw_affiliation_strings":["Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, California, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, California, United States of America","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Daniele Parisi","orcid":null},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniele Parisi","raw_affiliation_strings":["Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, California, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, California, United States of America","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112129828","display_name":"Janet E. Joy","orcid":"https://orcid.org/0000-0002-8871-0765"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Janet Joy","raw_affiliation_strings":["Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, California, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, California, United States of America","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052095898","display_name":"Steven R. Head","orcid":"https://orcid.org/0000-0002-5490-2750"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Steven R. Head","raw_affiliation_strings":["Genomics Core, The Scripps Research Institute, La Jolla, California, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genomics Core, The Scripps Research Institute, La Jolla, California, United States of America","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111392769","display_name":"Jean-Christophe Ducom","orcid":null},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jean-Christophe Ducom","raw_affiliation_strings":["Information Technology Services, The Scripps Research Institute, La Jolla, California, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Information Technology Services, The Scripps Research Institute, La Jolla, California, United States of America","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011476876","display_name":"Padmaja Natarajan","orcid":null},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Padmaja Natarajan","raw_affiliation_strings":["Center for Computational Biology and Bioinformatics, The Scripps Research Institute, La Jolla, California, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Computational Biology and Bioinformatics, The Scripps Research Institute, La Jolla, California, United States of America","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069146576","display_name":"Haissi Cui","orcid":"https://orcid.org/0000-0003-3358-8958"},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Haissi Cui","raw_affiliation_strings":["Department of Chemistry, University of Toronto, Toronto, Ontario, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry, University of Toronto, Toronto, Ontario, Canada","institution_ids":["https://openalex.org/I185261750"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5003179870","display_name":"Sabah Ul-Hasan","orcid":"https://orcid.org/0000-0001-6334-452X"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]},{"id":"https://openalex.org/I1293055157","display_name":"New America","ror":"https://ror.org/008zvz098","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1293055157"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sabah Ul-Hasan","raw_affiliation_strings":["Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, California, United States of America","Independent Researcher, Albuquerque, New Mexico, United States of America"],"raw_orcid":"https://orcid.org/0000-0001-6334-452X","affiliations":[{"raw_affiliation_string":"Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, California, United States of America","institution_ids":["https://openalex.org/I123431417"]},{"raw_affiliation_string":"Independent Researcher, Albuquerque, New Mexico, United States of America","institution_ids":["https://openalex.org/I1293055157"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5023273202"],"corresponding_institution_ids":["https://openalex.org/I123431417","https://openalex.org/I223532165","https://openalex.org/I2801159745"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.143482,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"21","issue":"9","first_page":"e1013453","last_page":"e1013453"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13280","display_name":"Biomedical and Engineering Education","score":0.9832000136375427,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.974399983882904,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-genomics","display_name":"Computational genomics","score":0.5857999920845032},{"id":"https://openalex.org/keywords/complement","display_name":"Complement (music)","score":0.4968000054359436},{"id":"https://openalex.org/keywords/computational-model","display_name":"Computational model","score":0.4952000081539154},{"id":"https://openalex.org/keywords/computational-thinking","display_name":"Computational thinking","score":0.4837000072002411},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.44190001487731934},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.42809998989105225},{"id":"https://openalex.org/keywords/diversity","display_name":"Diversity (politics)","score":0.41200000047683716},{"id":"https://openalex.org/keywords/coding","display_name":"Coding (social sciences)","score":0.36880001425743103}],"concepts":[{"id":"https://openalex.org/C39238701","wikidata":"https://www.wikidata.org/wiki/Q2091816","display_name":"Computational genomics","level":5,"score":0.5857999920845032},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5403000116348267},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5026000142097473},{"id":"https://openalex.org/C112313634","wikidata":"https://www.wikidata.org/wiki/Q7886648","display_name":"Complement (music)","level":5,"score":0.4968000054359436},{"id":"https://openalex.org/C66024118","wikidata":"https://www.wikidata.org/wiki/Q1122506","display_name":"Computational model","level":2,"score":0.4952000081539154},{"id":"https://openalex.org/C2780368719","wikidata":"https://www.wikidata.org/wiki/Q5157342","display_name":"Computational thinking","level":2,"score":0.4837000072002411},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.44190001487731934},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.42809998989105225},{"id":"https://openalex.org/C2781316041","wikidata":"https://www.wikidata.org/wiki/Q1230584","display_name":"Diversity (politics)","level":2,"score":0.41200000047683716},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.37720000743865967},{"id":"https://openalex.org/C179518139","wikidata":"https://www.wikidata.org/wiki/Q5140297","display_name":"Coding (social sciences)","level":2,"score":0.36880001425743103},{"id":"https://openalex.org/C191120209","wikidata":"https://www.wikidata.org/wiki/Q908902","display_name":"Structural biology","level":2,"score":0.30300000309944153},{"id":"https://openalex.org/C2987190108","wikidata":"https://www.wikidata.org/wiki/Q925667","display_name":"Computational simulation","level":2,"score":0.30149999260902405},{"id":"https://openalex.org/C69131567","wikidata":"https://www.wikidata.org/wiki/Q2068215","display_name":"Structural bioinformatics","level":3,"score":0.3000999987125397},{"id":"https://openalex.org/C179799912","wikidata":"https://www.wikidata.org/wiki/Q205084","display_name":"Computational complexity theory","level":2,"score":0.29980000853538513},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.295199990272522},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.287200003862381},{"id":"https://openalex.org/C3020431745","wikidata":"https://www.wikidata.org/wiki/Q25325220","display_name":"Many core","level":2,"score":0.2842999994754791},{"id":"https://openalex.org/C2992077199","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biological sciences","level":2,"score":0.27630001306533813},{"id":"https://openalex.org/C2164484","wikidata":"https://www.wikidata.org/wiki/Q5170150","display_name":"Core (optical fiber)","level":2,"score":0.26080000400543213},{"id":"https://openalex.org/C55587333","wikidata":"https://www.wikidata.org/wiki/Q1133029","display_name":"Engineering ethics","level":1,"score":0.258899986743927},{"id":"https://openalex.org/C2779041819","wikidata":"https://www.wikidata.org/wiki/Q10302238","display_name":"Undergraduate research","level":2,"score":0.25429999828338623}],"mesh":[{"descriptor_ui":"D000047","descriptor_name":"Academies and Institutes","qualifier_ui":"Q000458","qualifier_name":"organization & administration","is_major_topic":true},{"descriptor_ui":"D000047","descriptor_name":"Academies and Institutes","qualifier_ui":"Q000458","qualifier_name":"organization & administration","is_major_topic":true},{"descriptor_ui":"D000047","descriptor_name":"Academies and Institutes","qualifier_ui":"Q000458","qualifier_name":"organization & administration","is_major_topic":true},{"descriptor_ui":"D000047","descriptor_name":"Academies and Institutes","qualifier_ui":"Q000458","qualifier_name":"organization & administration","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012108","descriptor_name":"Research Personnel","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D012108","descriptor_name":"Research Personnel","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D012108","descriptor_name":"Research Personnel","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D012108","descriptor_name":"Research Personnel","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000458","qualifier_name":"organization & administration","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000458","qualifier_name":"organization & administration","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000458","qualifier_name":"organization & administration","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000458","qualifier_name":"organization & administration","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1371/journal.pcbi.1013453","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1013453","pdf_url":"https://curated-unify.zendy.io/wp-content/uploads/2025/03/AI-in-Research-Survey-Report.pdf","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:40929173","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40929173","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:doaj.org/article:fc959510c4044f95aa29b2776a139845","is_oa":true,"landing_page_url":"https://doaj.org/article/fc959510c4044f95aa29b2776a139845","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 21, Iss 9, p e1013453 (2025)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:12422415","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12422415/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1013453","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1013453","pdf_url":"https://curated-unify.zendy.io/wp-content/uploads/2025/03/AI-in-Research-Survey-Report.pdf","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G8813048092","display_name":null,"funder_award_id":"CRI2904","funder_id":"https://openalex.org/F4320306155","funder_display_name":"Cancer Research Institute"}],"funders":[{"id":"https://openalex.org/F4320306155","display_name":"Cancer Research Institute","ror":"https://ror.org/02f3xk561"},{"id":"https://openalex.org/F4320310050","display_name":"University of Utah","ror":"https://ror.org/03r0ha626"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4414110858.pdf","grobid_xml":"https://content.openalex.org/works/W4414110858.grobid-xml"},"referenced_works_count":34,"referenced_works":["https://openalex.org/W1769468240","https://openalex.org/W1793806344","https://openalex.org/W1979196954","https://openalex.org/W1988496957","https://openalex.org/W2060718561","https://openalex.org/W2069068805","https://openalex.org/W2104846587","https://openalex.org/W2122730592","https://openalex.org/W2171804472","https://openalex.org/W2187098477","https://openalex.org/W2272267301","https://openalex.org/W2324375748","https://openalex.org/W2328776311","https://openalex.org/W2337795314","https://openalex.org/W2735641780","https://openalex.org/W2742478344","https://openalex.org/W2793419385","https://openalex.org/W2896822135","https://openalex.org/W2949550946","https://openalex.org/W2966725903","https://openalex.org/W3006139292","https://openalex.org/W3174368456","https://openalex.org/W3183904002","https://openalex.org/W3190091903","https://openalex.org/W3203912530","https://openalex.org/W3209238322","https://openalex.org/W4220685469","https://openalex.org/W4245961435","https://openalex.org/W4284896762","https://openalex.org/W4383741417","https://openalex.org/W4390827736","https://openalex.org/W4392471749","https://openalex.org/W4393053782","https://openalex.org/W4405623342"],"related_works":["https://openalex.org/W2226172145","https://openalex.org/W2935703330","https://openalex.org/W185100777","https://openalex.org/W2606645708","https://openalex.org/W2385787406","https://openalex.org/W3047052167","https://openalex.org/W3127469524","https://openalex.org/W4384571918","https://openalex.org/W3212428388","https://openalex.org/W2356429006"],"abstract_inverted_index":{"Biology":[0,125],"has":[1,134],"been":[2],"transformed":[3],"by":[4,104],"the":[5,11,32,46,62,70,77,123,151,162,166,198],"rapid":[6],"development":[7],"of":[8,14,38,61,75,79,110,153,158,200],"computing":[9,201],"and":[10,41,73,126,138,144,173,178],"concurrent":[12],"rise":[13],"data-rich":[15],"approaches":[16],"such":[17],"as,":[18],"omics":[19],"or":[20,85],"high-resolution":[21],"imaging.":[22],"However,":[23],"there":[24],"is":[25],"a":[26,106,189],"persistent":[27],"computational":[28,57,98,118,170],"skills":[29],"gap":[30],"in":[31,56,69,117,202],"biomedical":[33,114,203],"research":[34,174],"workforce.":[35],"Inherent":[36],"limitations":[37],"classroom":[39],"teaching":[40],"institutional":[42,194],"core":[43],"support":[44],"highlight":[45],"need":[47],"for":[48,51,196],"accessible":[49],"ways":[50],"researchers":[52,115],"to":[53,90,121,169,192],"explore":[54],"developments":[55],"biology.":[58],"An":[59],"analysis":[60],"Scripps":[63],"Research":[64],"Genomics":[65],"Core":[66],"revealed":[67],"increases":[68],"total":[71],"number":[72],"diversity":[74],"experiments:":[76],"share":[78],"experiments":[80],"other":[81],"than":[82],"bulk":[83],"RNA-":[84],"DNA-sequencing":[86],"increased":[87,165],"from":[88],"34%":[89],"60%":[91],"within":[92],"10":[93],"years,":[94],"requiring":[95],"more":[96],"tailored":[97],"analyses.":[99],"These":[100],"challenges":[101],"were":[102],"tackled":[103],"forming":[105],"volunteer-led":[107,184],"affinity":[108,129,185],"group":[109,133],"approximately":[111],"300":[112],"academic":[113],"interested":[116],"biology,":[119],"referred":[120],"as":[122],"Computational":[124],"Bioinformatics":[127],"(CBB)":[128],"group.":[130],"This":[131],"adaptive":[132],"provided":[135],"continuing":[136],"education":[137],"networking":[139,179],"opportunities":[140,180],"through":[141],"seminars,":[142],"workshops,":[143],"coding":[145],"sessions":[146],"while":[147],"evolving":[148],"along":[149],"with":[150],"needs":[152],"its":[154],"members.":[155],"A":[156],"survey":[157],"CBB's":[159],"impact":[160],"confirmed":[161],"group's":[163],"events":[164,175],"members'":[167],"exposure":[168],"biology":[171],"educational":[172],"(79%":[176],"respondents)":[177],"(61%":[181],"respondents).":[182],"Thus,":[183],"groups":[186],"may":[187],"be":[188],"viable":[190],"complement":[191],"traditional":[193],"resources":[195],"enhancing":[197],"application":[199],"research.":[204]},"counts_by_year":[],"updated_date":"2026-07-31T08:31:51.225901","created_date":"2025-10-10T00:00:00"}
