{"id":"https://openalex.org/W4413138599","doi":"https://doi.org/10.1371/journal.pcbi.1013323","title":"A software ecosystem for brain tractometry processing, analysis, and insight","display_name":"A software ecosystem for brain tractometry processing, analysis, and insight","publication_year":2025,"publication_date":"2025-08-14","ids":{"openalex":"https://openalex.org/W4413138599","doi":"https://doi.org/10.1371/journal.pcbi.1013323","pmid":"https://pubmed.ncbi.nlm.nih.gov/40811747"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1013323","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1013323","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1371/journal.pcbi.1013323","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5031691155","display_name":"John Kruper","orcid":"https://orcid.org/0000-0003-0081-391X"},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"John Kruper","raw_affiliation_strings":["Department of Psychology, University of Washington, Seattle, Washington, United States of America","eScience Institute, University of Washington, Seattle, Washington, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Psychology, University of Washington, Seattle, Washington, United States of America","institution_ids":["https://openalex.org/I201448701"]},{"raw_affiliation_string":"eScience Institute, University of Washington, Seattle, Washington, United States of America","institution_ids":["https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059439675","display_name":"Adam Richie-Halford","orcid":"https://orcid.org/0000-0001-9276-9084"},"institutions":[{"id":"https://openalex.org/I4210137306","display_name":"Stanford Medicine","ror":"https://ror.org/03mtd9a03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210137306","https://openalex.org/I97018004"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Adam Richie-Halford","raw_affiliation_strings":["Division of Developmental-Behavioral Pediatrics, Stanford University, Stanford, California, United States of America","Graduate School of Education, Stanford University, Stanford, California, United States of America"],"affiliations":[{"raw_affiliation_string":"Division of Developmental-Behavioral Pediatrics, Stanford University, Stanford, California, United States of America","institution_ids":["https://openalex.org/I97018004","https://openalex.org/I4210137306"]},{"raw_affiliation_string":"Graduate School of Education, Stanford University, Stanford, California, United States of America","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060054653","display_name":"Joanna Qiao","orcid":null},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joanna Qiao","raw_affiliation_strings":["Department of Psychology, University of Washington, Seattle, Washington, United States of America","eScience Institute, University of Washington, Seattle, Washington, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Psychology, University of Washington, Seattle, Washington, United States of America","institution_ids":["https://openalex.org/I201448701"]},{"raw_affiliation_string":"eScience Institute, University of Washington, Seattle, Washington, United States of America","institution_ids":["https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111227607","display_name":"Asa Gilmore","orcid":null},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Asa Gilmore","raw_affiliation_strings":["Department of Psychology, University of Washington, Seattle, Washington, United States of America","eScience Institute, University of Washington, Seattle, Washington, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Psychology, University of Washington, Seattle, Washington, United States of America","institution_ids":["https://openalex.org/I201448701"]},{"raw_affiliation_string":"eScience Institute, University of Washington, Seattle, Washington, United States of America","institution_ids":["https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102751132","display_name":"Kelly Chang","orcid":"https://orcid.org/0000-0001-5385-2782"},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kelly Chang","raw_affiliation_strings":["Department of Psychology, University of Washington, Seattle, Washington, United States of America","eScience Institute, University of Washington, Seattle, Washington, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Psychology, University of Washington, Seattle, Washington, United States of America","institution_ids":["https://openalex.org/I201448701"]},{"raw_affiliation_string":"eScience Institute, University of Washington, Seattle, Washington, United States of America","institution_ids":["https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082212808","display_name":"Mareike Grotheer","orcid":"https://orcid.org/0000-0002-8653-1157"},"institutions":[{"id":"https://openalex.org/I161103922","display_name":"Philipps University of Marburg","ror":"https://ror.org/01rdrb571","country_code":"DE","type":"education","lineage":["https://openalex.org/I161103922"]},{"id":"https://openalex.org/I60262850","display_name":"Phillips University","ror":"https://ror.org/04fctr677","country_code":"US","type":"education","lineage":["https://openalex.org/I60262850"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"Mareike Grotheer","raw_affiliation_strings":["Center for Mind, Brain and Behavior, Phillips-Universit\u00e4t Marburg and Justus-Liebig Universit\u00e4t Giessen, Marburg, Germany","Department of Psychology, Phillips-Universit\u00e4t Marburg, Marburg, Germany"],"affiliations":[{"raw_affiliation_string":"Center for Mind, Brain and Behavior, Phillips-Universit\u00e4t Marburg and Justus-Liebig Universit\u00e4t Giessen, Marburg, Germany","institution_ids":["https://openalex.org/I60262850"]},{"raw_affiliation_string":"Department of Psychology, Phillips-Universit\u00e4t Marburg, Marburg, Germany","institution_ids":["https://openalex.org/I161103922"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070522993","display_name":"Ethan Roy","orcid":"https://orcid.org/0000-0002-4956-2237"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ethan Roy","raw_affiliation_strings":["Graduate School of Education, Stanford University, Stanford, California, United States of America"],"affiliations":[{"raw_affiliation_string":"Graduate School of Education, Stanford University, Stanford, California, United States of America","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022750896","display_name":"Sendy Caffarra","orcid":"https://orcid.org/0000-0003-3667-5061"},"institutions":[{"id":"https://openalex.org/I122346577","display_name":"University of Modena and Reggio Emilia","ror":"https://ror.org/02d4c4y02","country_code":"IT","type":"education","lineage":["https://openalex.org/I122346577"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Sendy Caffarra","raw_affiliation_strings":["Department of Biomedical, Metabolic and Neural Sciences, University of Modena and Reggio Emilia, Modena, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical, Metabolic and Neural Sciences, University of Modena and Reggio Emilia, Modena, Italy","institution_ids":["https://openalex.org/I122346577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077689681","display_name":"Teresa Garc\u00eda G\u00f3mez","orcid":"https://orcid.org/0000-0003-0251-2432"},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Teresa Gomez","raw_affiliation_strings":["Department of Psychology, University of Washington, Seattle, Washington, United States of America","eScience Institute, University of Washington, Seattle, Washington, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Psychology, University of Washington, Seattle, Washington, United States of America","institution_ids":["https://openalex.org/I201448701"]},{"raw_affiliation_string":"eScience Institute, University of Washington, Seattle, Washington, United States of America","institution_ids":["https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064753936","display_name":"Sam Chou","orcid":null},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sam Chou","raw_affiliation_strings":["Department of Psychology, University of Washington, Seattle, Washington, United States of America","eScience Institute, University of Washington, Seattle, Washington, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Psychology, University of Washington, Seattle, Washington, United States of America","institution_ids":["https://openalex.org/I201448701"]},{"raw_affiliation_string":"eScience Institute, University of Washington, Seattle, Washington, United States of America","institution_ids":["https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058453821","display_name":"Matthew Cieslak","orcid":"https://orcid.org/0000-0002-1931-4734"},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Matthew Cieslak","raw_affiliation_strings":["Department of Psychiatry, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America","Penn Lifespan Informatics and Neuroimaging Center, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America","Penn/CHOP Lifespan Brain Institute, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Psychiatry, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Penn Lifespan Informatics and Neuroimaging Center, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Penn/CHOP Lifespan Brain Institute, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108280418","display_name":"Serge Koudoro","orcid":null},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Serge Koudoro","raw_affiliation_strings":["Luddy School of Informatics, Computing, and Engineering, Indiana University, Bloomington, Indiana, United States of America"],"affiliations":[{"raw_affiliation_string":"Luddy School of Informatics, Computing, and Engineering, Indiana University, Bloomington, Indiana, United States of America","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083595381","display_name":"Eleftherios Garyfallidis","orcid":"https://orcid.org/0000-0002-3991-2774"},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eleftherios Garyfallidis","raw_affiliation_strings":["Luddy School of Informatics, Computing, and Engineering, Indiana University, Bloomington, Indiana, United States of America"],"affiliations":[{"raw_affiliation_string":"Luddy School of Informatics, Computing, and Engineering, Indiana University, Bloomington, Indiana, United States of America","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5119280510","display_name":"Theodore D Satthertwaite","orcid":null},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Theodore D. Satterthwaite","raw_affiliation_strings":["Department of Psychiatry, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America","Penn Lifespan Informatics and Neuroimaging Center, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America","Penn/CHOP Lifespan Brain Institute, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Psychiatry, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Penn Lifespan Informatics and Neuroimaging Center, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Penn/CHOP Lifespan Brain Institute, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058807565","display_name":"Jason D. Yeatman","orcid":"https://orcid.org/0000-0002-2686-1293"},"institutions":[{"id":"https://openalex.org/I4210137306","display_name":"Stanford Medicine","ror":"https://ror.org/03mtd9a03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210137306","https://openalex.org/I97018004"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jason D. Yeatman","raw_affiliation_strings":["Division of Developmental-Behavioral Pediatrics, Stanford University, Stanford, California, United States of America","Graduate School of Education, Stanford University, Stanford, California, United States of America"],"affiliations":[{"raw_affiliation_string":"Division of Developmental-Behavioral Pediatrics, Stanford University, Stanford, California, United States of America","institution_ids":["https://openalex.org/I97018004","https://openalex.org/I4210137306"]},{"raw_affiliation_string":"Graduate School of Education, Stanford University, Stanford, California, United States of America","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057244887","display_name":"Ariel Rokem","orcid":"https://orcid.org/0000-0003-0679-1985"},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ariel Rokem","raw_affiliation_strings":["Department of Psychology, University of Washington, Seattle, Washington, United States of America","eScience Institute, University of Washington, Seattle, Washington, United States of America","Graduate School of Education, Stanford University, Stanford, California, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Psychology, University of Washington, Seattle, Washington, United States of America","institution_ids":["https://openalex.org/I201448701"]},{"raw_affiliation_string":"eScience Institute, University of Washington, Seattle, Washington, United States of America","institution_ids":["https://openalex.org/I201448701"]},{"raw_affiliation_string":"Graduate School of Education, Stanford University, Stanford, California, United States of America","institution_ids":["https://openalex.org/I97018004"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":16,"corresponding_author_ids":["https://openalex.org/A5031691155"],"corresponding_institution_ids":["https://openalex.org/I201448701"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":6.3579,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.96765125,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":100},"biblio":{"volume":"21","issue":"8","first_page":"e1013323","last_page":"e1013323"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11304","display_name":"Advanced Neuroimaging Techniques and Applications","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11304","display_name":"Advanced Neuroimaging Techniques and Applications","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10241","display_name":"Functional Brain Connectivity Studies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10378","display_name":"Advanced MRI Techniques and Applications","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7730989456176758},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5473728775978088},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.4756690561771393},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.45974308252334595},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.45413216948509216},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4492621421813965},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.4437673091888428},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.33457478880882263}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7730989456176758},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5473728775978088},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.4756690561771393},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.45974308252334595},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.45413216948509216},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4492621421813965},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.4437673091888428},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.33457478880882263},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":true},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":true},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":true},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":true},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":true},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":true},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":true},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":true},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":true},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":true},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":true},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D038524","descriptor_name":"Diffusion Magnetic Resonance Imaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D038524","descriptor_name":"Diffusion Magnetic Resonance Imaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D038524","descriptor_name":"Diffusion Magnetic Resonance Imaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D038524","descriptor_name":"Diffusion Magnetic Resonance Imaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D038524","descriptor_name":"Diffusion Magnetic Resonance Imaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D038524","descriptor_name":"Diffusion Magnetic Resonance Imaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D066127","descriptor_name":"White Matter","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":false},{"descriptor_ui":"D066127","descriptor_name":"White Matter","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":false},{"descriptor_ui":"D066127","descriptor_name":"White Matter","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":false},{"descriptor_ui":"D066127","descriptor_name":"White Matter","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":false},{"descriptor_ui":"D066127","descriptor_name":"White Matter","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":false},{"descriptor_ui":"D066127","descriptor_name":"White Matter","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1371/journal.pcbi.1013323","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1013323","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:40811747","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40811747","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:doaj.org/article:df59f4d26e0a42da9789a0ddad5d331d","is_oa":true,"landing_page_url":"https://doaj.org/article/df59f4d26e0a42da9789a0ddad5d331d","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 21, Iss 8, p e1013323 (2025)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:11181352","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12373284","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:iris.unimore.it:11380/1385788","is_oa":true,"landing_page_url":"https://hdl.handle.net/11380/1385788","pdf_url":null,"source":{"id":"https://openalex.org/S4306400718","display_name":"IRIS UNIMORE (University of Modena and Reggio Emilia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I122346577","host_organization_name":"University of Modena and Reggio Emilia","host_organization_lineage":["https://openalex.org/I122346577"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1013323","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1013323","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","score":0.46000000834465027,"id":"https://metadata.un.org/sdg/15"}],"awards":[{"id":"https://openalex.org/G6052167412","display_name":null,"funder_award_id":"1934292","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8297988257","display_name":null,"funder_award_id":"DGE-214000","funder_id":"https://openalex.org/F4562087700","funder_display_name":"National Science Foundation Graduate Research Fellowship Program"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306151","display_name":"Alfred P. Sloan Foundation","ror":"https://ror.org/052csg198"},{"id":"https://openalex.org/F4320306202","display_name":"Gordon and Betty Moore Foundation","ror":"https://ror.org/006wxqw41"},{"id":"https://openalex.org/F4320315474","display_name":"Chan Zuckerberg Initiative","ror":"https://ror.org/02qenvm24"},{"id":"https://openalex.org/F4562087700","display_name":"National Science Foundation Graduate Research Fellowship Program","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":127,"referenced_works":["https://openalex.org/W1596936080","https://openalex.org/W1824528708","https://openalex.org/W1970928383","https://openalex.org/W1993003146","https://openalex.org/W2001611992","https://openalex.org/W2009837079","https://openalex.org/W2012100841","https://openalex.org/W2019737946","https://openalex.org/W2022530159","https://openalex.org/W2024729467","https://openalex.org/W2032254014","https://openalex.org/W2053884965","https://openalex.org/W2058046532","https://openalex.org/W2062791478","https://openalex.org/W2064675550","https://openalex.org/W2067509374","https://openalex.org/W2072943225","https://openalex.org/W2077559791","https://openalex.org/W2095705004","https://openalex.org/W2107665951","https://openalex.org/W2109181684","https://openalex.org/W2110065044","https://openalex.org/W2111865947","https://openalex.org/W2112796928","https://openalex.org/W2116823839","https://openalex.org/W2135046866","https://openalex.org/W2139158372","https://openalex.org/W2146421134","https://openalex.org/W2149199519","https://openalex.org/W2154899130","https://openalex.org/W2160033652","https://openalex.org/W2167827350","https://openalex.org/W2170480020","https://openalex.org/W2194775991","https://openalex.org/W2203524657","https://openalex.org/W2235769802","https://openalex.org/W2330532773","https://openalex.org/W2529524612","https://openalex.org/W2551393996","https://openalex.org/W2561810854","https://openalex.org/W2602200165","https://openalex.org/W2735700022","https://openalex.org/W2738180183","https://openalex.org/W2752410508","https://openalex.org/W2754051771","https://openalex.org/W2766639217","https://openalex.org/W2780601052","https://openalex.org/W2788755901","https://openalex.org/W2789530810","https://openalex.org/W2790406046","https://openalex.org/W2796958728","https://openalex.org/W2803837136","https://openalex.org/W2803890652","https://openalex.org/W2806109751","https://openalex.org/W2875261689","https://openalex.org/W2892456951","https://openalex.org/W2945612636","https://openalex.org/W2947802409","https://openalex.org/W2950030754","https://openalex.org/W2950086191","https://openalex.org/W2951103577","https://openalex.org/W2951936974","https://openalex.org/W2952043257","https://openalex.org/W2953134824","https://openalex.org/W2963908804","https://openalex.org/W2970898057","https://openalex.org/W2997591727","https://openalex.org/W2999007024","https://openalex.org/W3003257820","https://openalex.org/W3026522746","https://openalex.org/W3035965352","https://openalex.org/W3036595745","https://openalex.org/W3043321626","https://openalex.org/W3046141003","https://openalex.org/W3046296398","https://openalex.org/W3080288479","https://openalex.org/W3092593892","https://openalex.org/W3099878876","https://openalex.org/W3100043936","https://openalex.org/W3106083666","https://openalex.org/W3118707269","https://openalex.org/W3121452939","https://openalex.org/W3127178723","https://openalex.org/W3130188009","https://openalex.org/W3132513078","https://openalex.org/W3132843210","https://openalex.org/W3149652069","https://openalex.org/W3173376743","https://openalex.org/W3174100758","https://openalex.org/W3174174150","https://openalex.org/W3184921360","https://openalex.org/W3187100106","https://openalex.org/W3198759222","https://openalex.org/W3214217223","https://openalex.org/W4205590160","https://openalex.org/W4205798776","https://openalex.org/W4211245039","https://openalex.org/W4213374733","https://openalex.org/W4224273251","https://openalex.org/W4235243453","https://openalex.org/W4246763633","https://openalex.org/W4285405136","https://openalex.org/W4295312788","https://openalex.org/W4295830359","https://openalex.org/W4297933964","https://openalex.org/W4304783064","https://openalex.org/W4323810842","https://openalex.org/W4385618095","https://openalex.org/W4386099790","https://openalex.org/W4389725839","https://openalex.org/W4390640406","https://openalex.org/W4390692490","https://openalex.org/W4391585459","https://openalex.org/W4392659125","https://openalex.org/W4393139383","https://openalex.org/W4394727037","https://openalex.org/W4395670051","https://openalex.org/W4399518513","https://openalex.org/W4399593070","https://openalex.org/W4399914534","https://openalex.org/W4400822590","https://openalex.org/W4402328390","https://openalex.org/W4403625866","https://openalex.org/W4404933030","https://openalex.org/W4405005303","https://openalex.org/W4405984435","https://openalex.org/W4411364615"],"related_works":["https://openalex.org/W2378211422","https://openalex.org/W4321353415","https://openalex.org/W2745001401","https://openalex.org/W2130974462","https://openalex.org/W2028665553","https://openalex.org/W2086519370","https://openalex.org/W4246352526","https://openalex.org/W2121910908","https://openalex.org/W915438175","https://openalex.org/W4230315250"],"abstract_inverted_index":{"Tractometry":[0],"uses":[1],"diffusion-weighted":[2],"magnetic":[3],"resonance":[4],"imaging":[5],"(dMRI)":[6],"to":[7,80],"assess":[8],"physical":[9],"properties":[10,43],"of":[11,20,26,29,33,40,52,61,84,91,111,126,128,145],"brain":[12],"connections.":[13],"Here,":[14],"we":[15],"present":[16],"an":[17],"integrative":[18],"ecosystem":[19,47],"software":[21,123,134],"that":[22,64,117],"performs":[23],"all":[24],"steps":[25],"tractometry:":[27],"post-processing":[28],"dMRI":[30,146],"data,":[31],"delineation":[32],"major":[34],"white":[35],"matter":[36],"pathways,":[37],"and":[38,54,59,75,99,108],"modeling":[39],"the":[41,62,81,89,122,143],"tissue":[42],"within":[44],"them.":[45],"This":[46],"also":[48,115],"provides":[49],"a":[50,139],"set":[51],"interoperable":[53],"extensible":[55],"tools":[56],"for":[57,142],"visualization":[58],"interpretation":[60],"results":[63],"extract":[65],"insights":[66],"from":[67],"these":[68,92,132],"measurements.":[69],"These":[70],"include":[71],"novel":[72],"machine":[73],"learning":[74],"statistical":[76,93],"analysis":[77,94,100,110,144],"methods":[78,95],"adapted":[79],"characteristic":[82],"structure":[83],"tract-based":[85],"data.":[86,147],"We":[87,114],"benchmark":[88],"performance":[90],"in":[96,121],"different":[97],"datasets":[98],"tasks,":[101],"including":[102],"hypothesis":[103],"testing":[104],"on":[105],"group":[106],"differences":[107],"predictive":[109],"subject":[112],"age.":[113],"demonstrate":[116],"computational":[118],"advances":[119],"implemented":[120],"offer":[124],"orders":[125],"magnitude":[127],"acceleration.":[129],"Taken":[130],"together,":[131],"open-source":[133],"tools-freely":[135],"available":[136],"at":[137],"https://tractometry.org-provide":[138],"transformative":[140],"environment":[141]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":1}],"updated_date":"2026-04-12T07:58:50.170612","created_date":"2025-10-10T00:00:00"}