{"id":"https://openalex.org/W4407449539","doi":"https://doi.org/10.1371/journal.pcbi.1012773","title":"AWGE-ESPCA: An edge sparse PCA model based on adaptive noise elimination regularization and weighted gene network for Hermetia illucens genomic data analysis","display_name":"AWGE-ESPCA: An edge sparse PCA model based on adaptive noise elimination regularization and weighted gene network for Hermetia illucens genomic data analysis","publication_year":2025,"publication_date":"2025-02-13","ids":{"openalex":"https://openalex.org/W4407449539","doi":"https://doi.org/10.1371/journal.pcbi.1012773","pmid":"https://pubmed.ncbi.nlm.nih.gov/39946426"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1012773","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1012773","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1371/journal.pcbi.1012773","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103104886","display_name":"Rui Miao","orcid":"https://orcid.org/0000-0001-5292-4377"},"institutions":[{"id":"https://openalex.org/I182386381","display_name":"Zunyi Medical University","ror":"https://ror.org/00g5b0g93","country_code":"CN","type":"education","lineage":["https://openalex.org/I182386381"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Rui Miao","raw_affiliation_strings":["Basic Teaching Department, Zhuhai Campus of Zunyi Medical University, Zhu Hai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Basic Teaching Department, Zhuhai Campus of Zunyi Medical University, Zhu Hai, China","institution_ids":["https://openalex.org/I182386381"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073708075","display_name":"Haoyang Yu","orcid":"https://orcid.org/0000-0002-0748-9414"},"institutions":[{"id":"https://openalex.org/I182386381","display_name":"Zunyi Medical University","ror":"https://ror.org/00g5b0g93","country_code":"CN","type":"education","lineage":["https://openalex.org/I182386381"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Hao-Yang Yu","raw_affiliation_strings":["Basic Teaching Department, Zhuhai Campus of Zunyi Medical University, Zhu Hai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Basic Teaching Department, Zhuhai Campus of Zunyi Medical University, Zhu Hai, China","institution_ids":["https://openalex.org/I182386381"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5116252887","display_name":"Bing-Jie Zhong","orcid":null},"institutions":[{"id":"https://openalex.org/I182386381","display_name":"Zunyi Medical University","ror":"https://ror.org/00g5b0g93","country_code":"CN","type":"education","lineage":["https://openalex.org/I182386381"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Bing-Jie Zhong","raw_affiliation_strings":["Basic Teaching Department, Zhuhai Campus of Zunyi Medical University, Zhu Hai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Basic Teaching Department, Zhuhai Campus of Zunyi Medical University, Zhu Hai, China","institution_ids":["https://openalex.org/I182386381"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066345375","display_name":"Hongxia Sun","orcid":"https://orcid.org/0000-0002-4487-1823"},"institutions":[{"id":"https://openalex.org/I182386381","display_name":"Zunyi Medical University","ror":"https://ror.org/00g5b0g93","country_code":"CN","type":"education","lineage":["https://openalex.org/I182386381"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Hong-Xia Sun","raw_affiliation_strings":["Basic Teaching Department, Zhuhai Campus of Zunyi Medical University, Zhu Hai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Basic Teaching Department, Zhuhai Campus of Zunyi Medical University, Zhu Hai, China","institution_ids":["https://openalex.org/I182386381"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102931115","display_name":"Qiang Xia","orcid":"https://orcid.org/0000-0002-5966-4122"},"institutions":[{"id":"https://openalex.org/I182386381","display_name":"Zunyi Medical University","ror":"https://ror.org/00g5b0g93","country_code":"CN","type":"education","lineage":["https://openalex.org/I182386381"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Qiang Xia","raw_affiliation_strings":["Basic Teaching Department, Zhuhai Campus of Zunyi Medical University, Zhu Hai, China"],"raw_orcid":"https://orcid.org/0000-0002-5966-4122","affiliations":[{"raw_affiliation_string":"Basic Teaching Department, Zhuhai Campus of Zunyi Medical University, Zhu Hai, China","institution_ids":["https://openalex.org/I182386381"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5066345375","https://openalex.org/A5073708075","https://openalex.org/A5102931115","https://openalex.org/A5103104886","https://openalex.org/A5116252887"],"corresponding_institution_ids":["https://openalex.org/I182386381"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.01833123,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"21","issue":"2","first_page":"e1012773","last_page":"e1012773"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12336","display_name":"Insect Utilization and Effects","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1109","display_name":"Insect Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12336","display_name":"Insect Utilization and Effects","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1109","display_name":"Insect Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13435","display_name":"Animal and Plant Science Education","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/3207","display_name":"Social Psychology"},"field":{"id":"https://openalex.org/fields/32","display_name":"Psychology"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10702","display_name":"Insect and Arachnid Ecology and Behavior","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/hermetia-illucens","display_name":"Hermetia illucens","score":0.9027286767959595},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.536352276802063},{"id":"https://openalex.org/keywords/a-priori-and-a-posteriori","display_name":"A priori and a posteriori","score":0.4471396505832672},{"id":"https://openalex.org/keywords/gene-prediction","display_name":"Gene prediction","score":0.41883689165115356},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4021458327770233},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.3965676426887512},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.38598474860191345},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3521345555782318},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.25971361994743347},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.1579856276512146}],"concepts":[{"id":"https://openalex.org/C2777121799","wikidata":"https://www.wikidata.org/wiki/Q285029","display_name":"Hermetia illucens","level":3,"score":0.9027286767959595},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.536352276802063},{"id":"https://openalex.org/C75553542","wikidata":"https://www.wikidata.org/wiki/Q178161","display_name":"A priori and a posteriori","level":2,"score":0.4471396505832672},{"id":"https://openalex.org/C105565629","wikidata":"https://www.wikidata.org/wiki/Q1248292","display_name":"Gene prediction","level":4,"score":0.41883689165115356},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4021458327770233},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.3965676426887512},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.38598474860191345},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3521345555782318},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.25971361994743347},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.1579856276512146},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C173758957","wikidata":"https://www.wikidata.org/wiki/Q129270","display_name":"Larva","level":2,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003300","descriptor_name":"Copper","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003300","descriptor_name":"Copper","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003300","descriptor_name":"Copper","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003300","descriptor_name":"Copper","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D025341","descriptor_name":"Principal Component Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025341","descriptor_name":"Principal Component Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049750","descriptor_name":"Genome, Insect","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D049750","descriptor_name":"Genome, Insect","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D049750","descriptor_name":"Genome, Insect","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D049750","descriptor_name":"Genome, Insect","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1371/journal.pcbi.1012773","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1012773","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:39946426","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39946426","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11825005","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11825005","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11825005/pdf/pcbi.1012773.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"},{"id":"pmh:oai:RePEc:plo:pcbi00:1012773","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1012773","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:be06d27ebf8d443e9dbf229532107d4d","is_oa":false,"landing_page_url":"https://doaj.org/article/be06d27ebf8d443e9dbf229532107d4d","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 21, Iss 2, p e1012773 (2025)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1012773","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1012773","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5856169558","display_name":null,"funder_award_id":"No. 32060127; No. 31260528","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7902634704","display_name":"\u57fa\u4e8eNF-\u03baB/MAPK\u4fe1\u53f7\u901a\u8def\u7814\u7a76\u9ed1\u6c34\u867b\u6297\u83cc\u80bdHI-3\u5bf9\u5c0f\u9f20\u5de8\u566c\u7ec6\u80de\u514d\u75ab\u8c03\u63a7\u4f5c\u7528\u53ca\u673a\u5236","funder_award_id":"32060127","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":55,"referenced_works":["https://openalex.org/W581820307","https://openalex.org/W1505191356","https://openalex.org/W1578944750","https://openalex.org/W1752236790","https://openalex.org/W1983188024","https://openalex.org/W1984745567","https://openalex.org/W2000805348","https://openalex.org/W2005435367","https://openalex.org/W2021651899","https://openalex.org/W2027461913","https://openalex.org/W2039637513","https://openalex.org/W2076207552","https://openalex.org/W2085221145","https://openalex.org/W2103633133","https://openalex.org/W2122232025","https://openalex.org/W2122562647","https://openalex.org/W2156716863","https://openalex.org/W2164369044","https://openalex.org/W2193806089","https://openalex.org/W2273115195","https://openalex.org/W2414258062","https://openalex.org/W2734454107","https://openalex.org/W2766943327","https://openalex.org/W2802392794","https://openalex.org/W2894764101","https://openalex.org/W2925051830","https://openalex.org/W2964156851","https://openalex.org/W2974883966","https://openalex.org/W2991151572","https://openalex.org/W3011881870","https://openalex.org/W3047507965","https://openalex.org/W3054787308","https://openalex.org/W3100989718","https://openalex.org/W3134989920","https://openalex.org/W3136900394","https://openalex.org/W3172639291","https://openalex.org/W4213316818","https://openalex.org/W4223946306","https://openalex.org/W4224247894","https://openalex.org/W4229375883","https://openalex.org/W4237938811","https://openalex.org/W4246084279","https://openalex.org/W4248606406","https://openalex.org/W4256052140","https://openalex.org/W4280619900","https://openalex.org/W4285401277","https://openalex.org/W4301464423","https://openalex.org/W4312117018","https://openalex.org/W4387504604","https://openalex.org/W4389137623","https://openalex.org/W4391668683","https://openalex.org/W4391931989","https://openalex.org/W6676047094","https://openalex.org/W6694422196","https://openalex.org/W7056216681"],"related_works":["https://openalex.org/W2950731080","https://openalex.org/W4205488340","https://openalex.org/W4212975408","https://openalex.org/W4396498565","https://openalex.org/W4405631208","https://openalex.org/W3140808305","https://openalex.org/W3094269189","https://openalex.org/W4321242349","https://openalex.org/W2112814626","https://openalex.org/W2114671460"],"abstract_inverted_index":{"Hermetia":[0,23,40,56,80,89,151,192,296],"illucens":[1,24,41,57,81,90,152,193,297],"is":[2,92],"an":[3,160,180,291],"important":[4],"insect":[5],"resource.":[6],"Studies":[7],"have":[8],"shown":[9],"that":[10,112],"exploring":[11],"the":[12,17,22,36,46,63,105,117,133,139,188,199,205,215,220,255,262,270,276,279,321],"effects":[13],"of":[14,21,39,48,65,269,278],"Cu2+-stressed":[15,150],"on":[16,138,166],"growth":[18,153],"and":[19,146,171,237,249,265,282],"development":[20],"genome":[25,154,298],"holds":[26],"significant":[27],"scientific":[28],"importance.":[29],"There":[30],"are":[31,69,131],"three":[32],"major":[33],"challenges":[34],"in":[35,55,88,104,132,191,223,320],"current":[37],"studies":[38],"genomic":[42,50,58,85,194],"data":[43,51,59,91],"analysis:":[44],"firstly,":[45],"lack":[47],"available":[49],"which":[52,130,213,300],"limits":[53],"researchers":[54,122,304],"analysis.":[60],"Secondly,":[61],"to":[62,99,127,217,253],"best":[64],"our":[66],"knowledge,":[67,212],"there":[68],"no":[70],"Artificial":[71],"Intelligence":[72],"(AI)":[73],"feature":[74],"selection":[75,267],"models":[76,110,243,252],"designed":[77],"specifically":[78],"for":[79,295],"genome.":[82],"Unlike":[83],"human":[84],"data,":[86],"noise":[87,168,182,189],"a":[93,148,210,313],"more":[94,125],"serious":[95],"problem.":[96],"Third,":[97],"how":[98],"choose":[100],"those":[101],"genes":[102],"located":[103],"pathway":[106,134,264],"enrichment":[107,135],"region.":[108,136],"Existing":[109],"assume":[111],"each":[113],"gene":[114,128,173,221,266],"probe":[115],"has":[116],"same":[118],"priori":[119,211],"weight.":[120],"However,":[121],"usually":[123],"pay":[124],"attention":[126],"probes":[129,222],"Based":[137],"above":[140],"challenges,":[141],"we":[142,157,310],"initially":[143],"construct":[144],"experiments":[145,236,274],"establish":[147],"new":[149],"dataset.":[155],"Subsequently,":[156],"propose":[158],"AWGE-ESPCA:":[159],"edge":[161],"Sparse":[162,206,241],"PCA":[163,242],"model":[164,177,216,256,294,318],"based":[165],"adaptive":[167,181,280],"elimination":[169,183],"regularization":[170,184],"weighted":[172],"network.":[174],"The":[175,258],"AWGE-ESPCA":[176,271],"innovatively":[178],"proposes":[179],"method,":[185],"effectively":[186,302],"addressing":[187],"challenge":[190],"data.":[195],"We":[196],"also":[197,311],"integrate":[198],"known":[200],"gene-pathway":[201],"quantitative":[202],"information":[203],"into":[204],"PCA(SPCA)":[207],"framework":[208],"as":[209,226,228,244,246],"allows":[214],"filter":[218],"out":[219],"pathway-rich":[224],"regions":[225],"much":[227],"possible.":[229],"Ultimately,":[230],"this":[231,288],"study":[232],"conducts":[233],"five":[234],"independent":[235],"compared":[238],"four":[239],"latest":[240],"well":[245],"representative":[247],"supervised":[248],"unsupervised":[250,293],"baseline":[251],"validate":[254,275],"performance.":[257],"experimental":[259],"results":[260],"demonstrate":[261],"superior":[263],"capabilities":[268],"model.":[272],"Ablation":[273],"role":[277],"regularizer":[281],"network":[283],"weighting":[284],"module.":[285],"To":[286],"summarize,":[287],"paper":[289],"presents":[290],"innovative":[292],"analysis,":[299],"can":[301],"help":[303],"identify":[305],"potential":[306],"biomarkers.":[307],"In":[308],"addition,":[309],"provide":[312],"working":[314],"AWGE":[315],"-":[316],"ESPCA":[317],"code":[319],"address:":[322],"https://github.com/yhyresearcher/AWGE_ESPCA.":[323]},"counts_by_year":[],"updated_date":"2026-07-17T09:13:05.818461","created_date":"2025-10-10T00:00:00"}
