{"id":"https://openalex.org/W4404399296","doi":"https://doi.org/10.1371/journal.pcbi.1012509","title":"A new look at TFPI inhibition of factor X activation","display_name":"A new look at TFPI inhibition of factor X activation","publication_year":2024,"publication_date":"2024-11-15","ids":{"openalex":"https://openalex.org/W4404399296","doi":"https://doi.org/10.1371/journal.pcbi.1012509","pmid":"https://pubmed.ncbi.nlm.nih.gov/39546494"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1012509","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1371/journal.pcbi.1012509","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"http://dx.doi.org/10.1371/journal.pcbi.1012509","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016506079","display_name":"Fabian Santiago","orcid":"https://orcid.org/0000-0002-5369-4128"},"institutions":[{"id":"https://openalex.org/I156087764","display_name":"University of California, Merced","ror":"https://ror.org/00d9ah105","country_code":"US","type":"education","lineage":["https://openalex.org/I156087764"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Fabian Santiago","raw_affiliation_strings":["Department of Applied Mathematics, University of California Merced, Merced, California, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-5369-4128","affiliations":[{"raw_affiliation_string":"Department of Applied Mathematics, University of California Merced, Merced, California, United States of America","institution_ids":["https://openalex.org/I156087764"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101900370","display_name":"Amandeep Kaur","orcid":"https://orcid.org/0000-0002-0359-6124"},"institutions":[{"id":"https://openalex.org/I156087764","display_name":"University of California, Merced","ror":"https://ror.org/00d9ah105","country_code":"US","type":"education","lineage":["https://openalex.org/I156087764"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Amandeep Kaur","raw_affiliation_strings":["Department of Applied Mathematics, University of California Merced, Merced, California, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Applied Mathematics, University of California Merced, Merced, California, United States of America","institution_ids":["https://openalex.org/I156087764"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114656242","display_name":"Shannon Bride","orcid":null},"institutions":[{"id":"https://openalex.org/I167576493","display_name":"Colorado School of Mines","ror":"https://ror.org/04raf6v53","country_code":"US","type":"education","lineage":["https://openalex.org/I167576493"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shannon Bride","raw_affiliation_strings":["Department of Applied Mathematics & Statistics, Colorado School of Mines, Golden, Colorado, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Applied Mathematics & Statistics, Colorado School of Mines, Golden, Colorado, United States of America","institution_ids":["https://openalex.org/I167576493"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051841089","display_name":"Dougald M. Monroe","orcid":"https://orcid.org/0000-0002-0493-2943"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dougald Monroe","raw_affiliation_strings":["UNC Blood Research Center, University of North Carolina, Chapel Hill, Chapel Hill, North Carolina, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-0493-2943","affiliations":[{"raw_affiliation_string":"UNC Blood Research Center, University of North Carolina, Chapel Hill, Chapel Hill, North Carolina, United States of America","institution_ids":["https://openalex.org/I114027177"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019746951","display_name":"Karin Leiderman","orcid":"https://orcid.org/0000-0002-4188-1305"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Karin Leiderman","raw_affiliation_strings":["Computational Medicine Program, University of North Carolina, Chapel Hill, Chapel Hill, North Carolina, United States of America","Mathematics Department, University of North Carolina, Chapel Hill, North Carolina, United States of America","UNC Blood Research Center, University of North Carolina, Chapel Hill, Chapel Hill, North Carolina, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-4188-1305","affiliations":[{"raw_affiliation_string":"Computational Medicine Program, University of North Carolina, Chapel Hill, Chapel Hill, North Carolina, United States of America","institution_ids":["https://openalex.org/I114027177"]},{"raw_affiliation_string":"Mathematics Department, University of North Carolina, Chapel Hill, North Carolina, United States of America","institution_ids":["https://openalex.org/I114027177"]},{"raw_affiliation_string":"UNC Blood Research Center, University of North Carolina, Chapel Hill, Chapel Hill, North Carolina, United States of America","institution_ids":["https://openalex.org/I114027177"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027970835","display_name":"Suzanne Sindi","orcid":"https://orcid.org/0000-0003-2742-4332"},"institutions":[{"id":"https://openalex.org/I156087764","display_name":"University of California, Merced","ror":"https://ror.org/00d9ah105","country_code":"US","type":"education","lineage":["https://openalex.org/I156087764"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Suzanne Sindi","raw_affiliation_strings":["Department of Applied Mathematics, University of California Merced, Merced, California, United States of America"],"raw_orcid":"https://orcid.org/0000-0003-2742-4332","affiliations":[{"raw_affiliation_string":"Department of Applied Mathematics, University of California Merced, Merced, California, United States of America","institution_ids":["https://openalex.org/I156087764"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5027970835"],"corresponding_institution_ids":["https://openalex.org/I156087764"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.37667455,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"20","issue":"11","first_page":"e1012509","last_page":"e1012509"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11721","display_name":"Blood properties and coagulation","score":0.9839000105857849,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11721","display_name":"Blood properties and coagulation","score":0.9839000105857849,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T13157","display_name":"Cancer-related gene regulation","score":0.9781000018119812,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10881","display_name":"Blood Coagulation and Thrombosis Mechanisms","score":0.967199981212616,"subfield":{"id":"https://openalex.org/subfields/2720","display_name":"Hematology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/tissue-factor-pathway-inhibitor","display_name":"Tissue factor pathway inhibitor","score":0.9021552801132202},{"id":"https://openalex.org/keywords/tissue-factor","display_name":"Tissue factor","score":0.8713464140892029},{"id":"https://openalex.org/keywords/coagulation","display_name":"Coagulation","score":0.718778133392334},{"id":"https://openalex.org/keywords/thrombin","display_name":"Thrombin","score":0.6234979629516602},{"id":"https://openalex.org/keywords/factor-x","display_name":"Factor X","score":0.5542958974838257},{"id":"https://openalex.org/keywords/regulator","display_name":"Regulator","score":0.489852637052536},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.4476887881755829},{"id":"https://openalex.org/keywords/biophysics","display_name":"Biophysics","score":0.44125327467918396},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.4217781126499176},{"id":"https://openalex.org/keywords/thromboplastin","display_name":"Thromboplastin","score":0.4140135943889618},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4069809913635254},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.33288198709487915},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.15361154079437256},{"id":"https://openalex.org/keywords/platelet","display_name":"Platelet","score":0.1518949270248413},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.13330575823783875},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.11717122793197632},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10116615891456604}],"concepts":[{"id":"https://openalex.org/C2777151630","wikidata":"https://www.wikidata.org/wiki/Q14878075","display_name":"Tissue factor pathway inhibitor","level":4,"score":0.9021552801132202},{"id":"https://openalex.org/C186738567","wikidata":"https://www.wikidata.org/wiki/Q412841","display_name":"Tissue factor","level":3,"score":0.8713464140892029},{"id":"https://openalex.org/C2778382381","wikidata":"https://www.wikidata.org/wiki/Q179217","display_name":"Coagulation","level":2,"score":0.718778133392334},{"id":"https://openalex.org/C2777292125","wikidata":"https://www.wikidata.org/wiki/Q409166","display_name":"Thrombin","level":3,"score":0.6234979629516602},{"id":"https://openalex.org/C2777444498","wikidata":"https://www.wikidata.org/wiki/Q423701","display_name":"Factor X","level":4,"score":0.5542958974838257},{"id":"https://openalex.org/C6929976","wikidata":"https://www.wikidata.org/wiki/Q3771881","display_name":"Regulator","level":3,"score":0.489852637052536},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.4476887881755829},{"id":"https://openalex.org/C12554922","wikidata":"https://www.wikidata.org/wiki/Q7100","display_name":"Biophysics","level":1,"score":0.44125327467918396},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.4217781126499176},{"id":"https://openalex.org/C144594695","wikidata":"https://www.wikidata.org/wiki/Q6153218","display_name":"Thromboplastin","level":3,"score":0.4140135943889618},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4069809913635254},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.33288198709487915},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.15361154079437256},{"id":"https://openalex.org/C89560881","wikidata":"https://www.wikidata.org/wiki/Q101026","display_name":"Platelet","level":2,"score":0.1518949270248413},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.13330575823783875},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.11717122793197632},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10116615891456604}],"mesh":[{"descriptor_ui":"D001777","descriptor_name":"Blood Coagulation","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true},{"descriptor_ui":"D001777","descriptor_name":"Blood Coagulation","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true},{"descriptor_ui":"D001777","descriptor_name":"Blood Coagulation","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true},{"descriptor_ui":"D001777","descriptor_name":"Blood Coagulation","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true},{"descriptor_ui":"D001777","descriptor_name":"Blood Coagulation","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true},{"descriptor_ui":"D001777","descriptor_name":"Blood Coagulation","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true},{"descriptor_ui":"D001777","descriptor_name":"Blood Coagulation","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true},{"descriptor_ui":"D005170","descriptor_name":"Factor X","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D005170","descriptor_name":"Factor X","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D005170","descriptor_name":"Factor X","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D005170","descriptor_name":"Factor X","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D005170","descriptor_name":"Factor X","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D005170","descriptor_name":"Factor X","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D005170","descriptor_name":"Factor X","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008074","descriptor_name":"Lipoproteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D008074","descriptor_name":"Lipoproteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D008074","descriptor_name":"Lipoproteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D008074","descriptor_name":"Lipoproteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D008074","descriptor_name":"Lipoproteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D008074","descriptor_name":"Lipoproteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D008074","descriptor_name":"Lipoproteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013925","descriptor_name":"Thromboplastin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013925","descriptor_name":"Thromboplastin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013925","descriptor_name":"Thromboplastin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013925","descriptor_name":"Thromboplastin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013925","descriptor_name":"Thromboplastin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013925","descriptor_name":"Thromboplastin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013925","descriptor_name":"Thromboplastin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015951","descriptor_name":"Factor Xa","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015951","descriptor_name":"Factor Xa","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015951","descriptor_name":"Factor Xa","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015951","descriptor_name":"Factor Xa","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015951","descriptor_name":"Factor Xa","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015951","descriptor_name":"Factor Xa","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015951","descriptor_name":"Factor Xa","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1371/journal.pcbi.1012509","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1371/journal.pcbi.1012509","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:39546494","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39546494","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11567595","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11567595","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11567595/pdf/pcbi.1012509.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"},{"id":"pmh:oai:RePEc:plo:pcbi00:1012509","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1012509","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:c2884e74c54446308d73d20f2c043f6f","is_oa":true,"landing_page_url":"https://doaj.org/article/c2884e74c54446308d73d20f2c043f6f","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 20, Iss 11, p e1012509 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1012509","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1371/journal.pcbi.1012509","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.4300000071525574,"display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G1652930883","display_name":null,"funder_award_id":"1848221","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3693324169","display_name":null,"funder_award_id":"CAREER DMS-1848221","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5154725139","display_name":null,"funder_award_id":"DMS-1848221","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6003866290","display_name":null,"funder_award_id":"12369656","funder_id":"https://openalex.org/F4320338281","funder_display_name":"Army Research Office"},{"id":"https://openalex.org/G6671297155","display_name":null,"funder_award_id":"CAREER","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7489865666","display_name":null,"funder_award_id":"DMS-1848221","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7782356629","display_name":null,"funder_award_id":"R01HL151984","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8906099568","display_name":null,"funder_award_id":"R01HL120728","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320338281","display_name":"Army Research Office","ror":"https://ror.org/05epdh915"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":42,"referenced_works":["https://openalex.org/W45091422","https://openalex.org/W1967085308","https://openalex.org/W1974514823","https://openalex.org/W1989228194","https://openalex.org/W1995780830","https://openalex.org/W1997388726","https://openalex.org/W2003089417","https://openalex.org/W2005668158","https://openalex.org/W2008703230","https://openalex.org/W2009888849","https://openalex.org/W2012802392","https://openalex.org/W2036682033","https://openalex.org/W2044204506","https://openalex.org/W2058161894","https://openalex.org/W2061254250","https://openalex.org/W2065105249","https://openalex.org/W2081647823","https://openalex.org/W2087458459","https://openalex.org/W2090625610","https://openalex.org/W2093457400","https://openalex.org/W2098140881","https://openalex.org/W2102115640","https://openalex.org/W2125520884","https://openalex.org/W2125573572","https://openalex.org/W2127946991","https://openalex.org/W2128602721","https://openalex.org/W2314693860","https://openalex.org/W2521953438","https://openalex.org/W2541696581","https://openalex.org/W2884519513","https://openalex.org/W2977211088","https://openalex.org/W3037702397","https://openalex.org/W3046754241","https://openalex.org/W3133925730","https://openalex.org/W3138536260","https://openalex.org/W3214436707","https://openalex.org/W3215121251","https://openalex.org/W4221103994","https://openalex.org/W4229823724","https://openalex.org/W4393097211","https://openalex.org/W6672493512","https://openalex.org/W6863119986"],"related_works":["https://openalex.org/W2401732910","https://openalex.org/W1998816346","https://openalex.org/W2066437077","https://openalex.org/W2295935469","https://openalex.org/W2396849003","https://openalex.org/W2399864467","https://openalex.org/W4241607847","https://openalex.org/W4324113851","https://openalex.org/W2218419185","https://openalex.org/W2054387357"],"abstract_inverted_index":{"Blood":[0],"coagulation":[1],"is":[2,46,56,79,89,96,256],"a":[3,8,18,97,183,217,266],"vital":[4],"physiological":[5,149],"process":[6,26],"involving":[7],"complex":[9,69],"network":[10],"of":[11,86,100,109,170,223,241,254,273],"biochemical":[12,127,186],"reactions,":[13],"which":[14,71,143],"converge":[15],"to":[16,37,66,181,203,220,230,237,271],"form":[17],"blood":[19],"clot":[20],"that":[21,198,213,251],"repairs":[22],"vascular":[23],"injury.":[24],"This":[25],"unfolds":[27],"in":[28,62,167],"three":[29],"phases:":[30],"initiation,":[31],"amplification,":[32],"and":[33,119,129,188],"propagation,":[34],"ultimately":[35],"leading":[36],"thrombin":[38],"formation.":[39],"Coagulation":[40],"begins":[41],"when":[42,57],"tissue":[43],"factor":[44,59,73,76,110,164,224],"(TF)":[45],"exposed":[47],"on":[48,162],"an":[49,140,174],"injured":[50],"vessel's":[51],"wall.":[52],"The":[53,262],"first":[54],"step":[55],"activated":[58,163],"VII":[60],"(VIIa)":[61],"the":[63,84,101,107,125,168,205,221,239,242],"plasma":[64],"binds":[65],"TF,":[67],"forming":[68],"TF:VIIa,":[70],"activates":[72],"X.":[74,111],"Activated":[75],"X":[77,165,225],"(Xa)":[78],"necessary":[80,257],"for":[81,178,191,258],"coagulation,":[82],"so":[83],"regulation":[85],"its":[87],"activation":[88,108],"crucial.":[90],"Tissue":[91],"Factor":[92],"Pathway":[93],"Inhibitor":[94],"(TFPI)":[95],"critical":[98],"regulator":[99],"initiation":[102],"phase":[103,275],"as":[104],"it":[105],"inhibits":[106],"While":[112],"previous":[113],"studies":[114,210],"have":[115,211],"proposed":[116,185],"two":[117,159,243],"pathways-direct":[118],"indirect":[120,141,263],"binding-for":[121],"TFPI's":[122],"inhibitory":[123,268,276],"role,":[124],"specific":[126],"reactions":[128],"their":[130],"rates":[131,190],"remain":[132],"ambiguous.":[133],"Many":[134],"existing":[135],"mathematical":[136],"models":[137],"only":[138],"assume":[139],"pathway,":[142],"may":[144],"be":[145],"less":[146],"effective":[147],"under":[148,246,260],"flow":[150,214,229],"conditions.":[151,248],"In":[152],"this":[153,231],"study,":[154],"we":[155],"revisit":[156],"datasets":[157],"from":[158],"experiments":[160],"focused":[161],"formation":[166],"presence":[169],"TFPI.":[171],"We":[172,227,249],"employ":[173],"adaptive":[175],"Metropolis":[176],"method":[177],"parameter":[179],"estimation":[180],"reinvestigate":[182],"previously":[184],"scheme":[187],"corresponding":[189],"both":[192,199],"inhibition":[193,222,244,259],"pathways.":[194],"Our":[195],"findings":[196],"show":[197],"pathways":[200,245],"are":[201],"essential":[202],"replicate":[204],"static":[206],"experimental":[207],"results.":[208],"Previous":[209],"suggested":[212],"itself":[215],"makes":[216],"significant":[218],"contribution":[219,240],"activation.":[226],"added":[228],"model":[232],"with":[233],"our":[234],"estimated":[235],"parameters":[236],"determine":[238],"these":[247],"found":[250],"direct":[252],"binding":[253],"TFPI":[255],"flow.":[261,279],"pathway":[264],"has":[265],"weaker":[267],"effect":[269],"due":[270],"removal":[272],"solution":[274],"complexes":[277],"by":[278]},"counts_by_year":[],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
