{"id":"https://openalex.org/W4402437176","doi":"https://doi.org/10.1371/journal.pcbi.1012448","title":"SEMbap: Bow-free covariance search and data de-correlation","display_name":"SEMbap: Bow-free covariance search and data de-correlation","publication_year":2024,"publication_date":"2024-09-11","ids":{"openalex":"https://openalex.org/W4402437176","doi":"https://doi.org/10.1371/journal.pcbi.1012448","pmid":"https://pubmed.ncbi.nlm.nih.gov/39259748"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1012448","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1012448","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1012448&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1012448&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5104690078","display_name":"Mario Grassi","orcid":null},"institutions":[{"id":"https://openalex.org/I25217355","display_name":"University of Pavia","ror":"https://ror.org/00s6t1f81","country_code":"IT","type":"education","lineage":["https://openalex.org/I25217355"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Mario Grassi","raw_affiliation_strings":["Department of Brain and Behavioral Sciences, University of Pavia, Pavia, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Brain and Behavioral Sciences, University of Pavia, Pavia, Italy","institution_ids":["https://openalex.org/I25217355"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5059863311","display_name":"Barbara Tarantino","orcid":"https://orcid.org/0000-0001-6384-2561"},"institutions":[{"id":"https://openalex.org/I25217355","display_name":"University of Pavia","ror":"https://ror.org/00s6t1f81","country_code":"IT","type":"education","lineage":["https://openalex.org/I25217355"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Barbara Tarantino","raw_affiliation_strings":["Department of Brain and Behavioral Sciences, University of Pavia, Pavia, Italy"],"raw_orcid":"https://orcid.org/0000-0001-6384-2561","affiliations":[{"raw_affiliation_string":"Department of Brain and Behavioral Sciences, University of Pavia, Pavia, Italy","institution_ids":["https://openalex.org/I25217355"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5059863311"],"corresponding_institution_ids":["https://openalex.org/I25217355"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.08676951,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"20","issue":"9","first_page":"e1012448","last_page":"e1012448"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10136","display_name":"Statistical Methods and Inference","score":0.9902999997138977,"subfield":{"id":"https://openalex.org/subfields/2613","display_name":"Statistics and Probability"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/covariance","display_name":"Covariance","score":0.7437707781791687},{"id":"https://openalex.org/keywords/principal-component-analysis","display_name":"Principal component analysis","score":0.6291197538375854},{"id":"https://openalex.org/keywords/covariance-matrix","display_name":"Covariance matrix","score":0.5725691914558411},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.545344352722168},{"id":"https://openalex.org/keywords/confounding","display_name":"Confounding","score":0.5174268484115601},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.42497938871383667},{"id":"https://openalex.org/keywords/correlation","display_name":"Correlation","score":0.4169844388961792},{"id":"https://openalex.org/keywords/covariance-and-correlation","display_name":"Covariance and correlation","score":0.4164890646934509},{"id":"https://openalex.org/keywords/estimation-of-covariance-matrices","display_name":"Estimation of covariance matrices","score":0.41108641028404236},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.38340094685554504},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.374081015586853},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.3677856922149658},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.35808318853378296},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3351357579231262},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.29745998978614807},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.15758347511291504},{"id":"https://openalex.org/keywords/random-variable","display_name":"Random variable","score":0.08283379673957825}],"concepts":[{"id":"https://openalex.org/C178650346","wikidata":"https://www.wikidata.org/wiki/Q201984","display_name":"Covariance","level":2,"score":0.7437707781791687},{"id":"https://openalex.org/C27438332","wikidata":"https://www.wikidata.org/wiki/Q2873","display_name":"Principal component analysis","level":2,"score":0.6291197538375854},{"id":"https://openalex.org/C185142706","wikidata":"https://www.wikidata.org/wiki/Q1134404","display_name":"Covariance matrix","level":2,"score":0.5725691914558411},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.545344352722168},{"id":"https://openalex.org/C77350462","wikidata":"https://www.wikidata.org/wiki/Q1125472","display_name":"Confounding","level":2,"score":0.5174268484115601},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.42497938871383667},{"id":"https://openalex.org/C117220453","wikidata":"https://www.wikidata.org/wiki/Q5172842","display_name":"Correlation","level":2,"score":0.4169844388961792},{"id":"https://openalex.org/C98991287","wikidata":"https://www.wikidata.org/wiki/Q5178895","display_name":"Covariance and correlation","level":5,"score":0.4164890646934509},{"id":"https://openalex.org/C180877172","wikidata":"https://www.wikidata.org/wiki/Q5401390","display_name":"Estimation of covariance matrices","level":3,"score":0.41108641028404236},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.38340094685554504},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.374081015586853},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.3677856922149658},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.35808318853378296},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3351357579231262},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.29745998978614807},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.15758347511291504},{"id":"https://openalex.org/C122123141","wikidata":"https://www.wikidata.org/wiki/Q176623","display_name":"Random variable","level":2,"score":0.08283379673957825},{"id":"https://openalex.org/C182514268","wikidata":"https://www.wikidata.org/wiki/Q7636889","display_name":"Sum of normally distributed random variables","level":4,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C95763700","wikidata":"https://www.wikidata.org/wiki/Q578985","display_name":"Convergence of random variables","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000078331","descriptor_name":"Correlation of Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000078331","descriptor_name":"Correlation of Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000078331","descriptor_name":"Correlation of Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000078331","descriptor_name":"Correlation of Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016011","descriptor_name":"Normal Distribution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016011","descriptor_name":"Normal Distribution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016011","descriptor_name":"Normal Distribution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016011","descriptor_name":"Normal Distribution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D025341","descriptor_name":"Principal Component Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025341","descriptor_name":"Principal Component Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025341","descriptor_name":"Principal Component Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025341","descriptor_name":"Principal Component Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1371/journal.pcbi.1012448","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1012448","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1012448&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:39259748","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39259748","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:11419354","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11419354","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11419354/pdf/pcbi.1012448.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"},{"id":"pmh:oai:RePEc:plo:pcbi00:1012448","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1012448","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1012448","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1012448","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1012448&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.4000000059604645}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4402437176.pdf","grobid_xml":"https://content.openalex.org/works/W4402437176.grobid-xml"},"referenced_works_count":61,"referenced_works":["https://openalex.org/W229097380","https://openalex.org/W1567728150","https://openalex.org/W1975395389","https://openalex.org/W1980480652","https://openalex.org/W2028302281","https://openalex.org/W2032036108","https://openalex.org/W2052575990","https://openalex.org/W2052975913","https://openalex.org/W2055509010","https://openalex.org/W2064788805","https://openalex.org/W2069916798","https://openalex.org/W2074609004","https://openalex.org/W2075334012","https://openalex.org/W2076261573","https://openalex.org/W2097596242","https://openalex.org/W2106210113","https://openalex.org/W2108119513","https://openalex.org/W2109605413","https://openalex.org/W2116581043","https://openalex.org/W2116650193","https://openalex.org/W2132555912","https://openalex.org/W2137499573","https://openalex.org/W2137892504","https://openalex.org/W2143891888","https://openalex.org/W2157752701","https://openalex.org/W2165190832","https://openalex.org/W2188333210","https://openalex.org/W2322659453","https://openalex.org/W2403934794","https://openalex.org/W2491250934","https://openalex.org/W2618817116","https://openalex.org/W2757374390","https://openalex.org/W2763292376","https://openalex.org/W2814120239","https://openalex.org/W2886399985","https://openalex.org/W2900832492","https://openalex.org/W2911448996","https://openalex.org/W2949853393","https://openalex.org/W2952114617","https://openalex.org/W2964129930","https://openalex.org/W2983831776","https://openalex.org/W3087034383","https://openalex.org/W3093661849","https://openalex.org/W3095200063","https://openalex.org/W3099718522","https://openalex.org/W3099830897","https://openalex.org/W3100205963","https://openalex.org/W3117548431","https://openalex.org/W3132963454","https://openalex.org/W3133354395","https://openalex.org/W4206425595","https://openalex.org/W4240017498","https://openalex.org/W4249130062","https://openalex.org/W4293567165","https://openalex.org/W4294216483","https://openalex.org/W4297220318","https://openalex.org/W4298091299","https://openalex.org/W4298870021","https://openalex.org/W4302423442","https://openalex.org/W6669044307","https://openalex.org/W6764014844"],"related_works":["https://openalex.org/W4297802450","https://openalex.org/W2886934452","https://openalex.org/W3114282518","https://openalex.org/W2024369332","https://openalex.org/W2057070315","https://openalex.org/W1583261817","https://openalex.org/W4366399462","https://openalex.org/W2353908688","https://openalex.org/W55308776","https://openalex.org/W192730354"],"abstract_inverted_index":{"Large-scale":[0],"studies":[1],"of":[2,13,37,69,74,80,96,110,140,176],"gene":[3],"expression":[4,14,169],"are":[5],"commonly":[6],"influenced":[7],"by":[8],"biological":[9],"and":[10,21,57,167,203,207],"technical":[11],"sources":[12],"variation,":[15],"including":[16],"batch":[17],"effects,":[18],"sample":[19],"characteristics,":[20],"environmental":[22],"impacts.":[23],"Learning":[24],"the":[25,35,78,94,104,124,172,177],"causal":[26],"relationships":[27],"between":[28],"observable":[29],"variables":[30,54],"may":[31,45],"be":[32],"challenging":[33],"in":[34,66,123],"presence":[36],"unobserved":[38,52],"confounders.":[39],"Furthermore,":[40],"many":[41,58],"high-dimensional":[42],"regression":[43],"techniques":[44],"perform":[46],"worse.":[47],"In":[48,103,171],"fact,":[49],"controlling":[50,199],"for":[51,64],"confounding":[53,197],"is":[55,77,116,133,144,191],"essential,":[56],"deconfounding":[59,83,157],"methods":[60,158],"have":[61,181],"been":[62,182],"suggested":[63],"application":[65],"a":[67,81,127,136],"variety":[68],"situations.":[70],"The":[71],"main":[72],"contribution":[73],"this":[75],"article":[76],"development":[79],"two-stage":[82],"procedure":[84],"based":[85],"on":[86,165],"Bow-free":[87],"Acyclic":[88],"Paths":[89],"(BAP)":[90],"search":[91,109,161,189],"developed":[92],"into":[93],"framework":[95],"Structural":[97],"Equation":[98],"Models":[99],"(SEM),":[100],"called":[101],"SEMbap().":[102],"first":[105],"stage,":[106,126],"an":[107],"exhaustive":[108],"missing":[111],"edges":[112,142],"with":[113,163],"significant":[114],"covariance":[115,179],"performed":[117],"via":[118,146],"Shipley":[119],"d-separation":[120],"tests;":[121],"then,":[122],"second":[125],"Constrained":[128],"Gaussian":[129],"Graphical":[130],"Model":[131],"(CGGM)":[132],"fitted":[134],"or":[135],"low":[137],"dimensional":[138],"representation":[139],"bow-free":[141],"structure":[143],"obtained":[145],"Graph":[147],"Laplacian":[148],"Principal":[149],"Component":[150],"Analysis":[151],"(gLPCA).":[152],"We":[153],"compare":[154],"four":[155],"popular":[156],"to":[159,185,193],"BAP":[160,188],"approach":[162],"applications":[164],"simulated":[166],"observed":[168],"data.":[170],"former,":[173],"different":[174],"structures":[175],"hidden":[178,196],"matrix":[180],"replicated.":[183],"Compared":[184],"existing":[186],"methods,":[187],"algorithm":[190],"able":[192],"correctly":[194],"identify":[195],"whilst":[198],"false":[200],"positive":[201],"rate":[202],"achieving":[204],"good":[205],"fitting":[206],"perturbation":[208],"metrics.":[209]},"counts_by_year":[],"updated_date":"2026-08-10T07:06:39.071514","created_date":"2025-10-10T00:00:00"}
