{"id":"https://openalex.org/W4402035908","doi":"https://doi.org/10.1371/journal.pcbi.1012400","title":"ECD-CDGI: An efficient energy-constrained diffusion model for cancer driver gene identification","display_name":"ECD-CDGI: An efficient energy-constrained diffusion model for cancer driver gene identification","publication_year":2024,"publication_date":"2024-08-30","ids":{"openalex":"https://openalex.org/W4402035908","doi":"https://doi.org/10.1371/journal.pcbi.1012400","pmid":"https://pubmed.ncbi.nlm.nih.gov/39213450"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1012400","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1012400","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1371/journal.pcbi.1012400","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5107911773","display_name":"Tao Wang","orcid":"https://orcid.org/0009-0002-4592-8227"},"institutions":[{"id":"https://openalex.org/I146620803","display_name":"Wenzhou University","ror":"https://ror.org/020hxh324","country_code":"CN","type":"education","lineage":["https://openalex.org/I146620803"]},{"id":"https://openalex.org/I4400573270","display_name":"Wenzhou University of Technology","ror":"https://ror.org/03dd7qj98","country_code":null,"type":"education","lineage":["https://openalex.org/I4400573270"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Tao Wang","raw_affiliation_strings":["School of Data Science and Artificial Intelligence, Wenzhou University of Technology, Wenzhou, China"],"affiliations":[{"raw_affiliation_string":"School of Data Science and Artificial Intelligence, Wenzhou University of Technology, Wenzhou, China","institution_ids":["https://openalex.org/I146620803","https://openalex.org/I4400573270"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004683765","display_name":"Linlin Zhuo","orcid":null},"institutions":[{"id":"https://openalex.org/I146620803","display_name":"Wenzhou University","ror":"https://ror.org/020hxh324","country_code":"CN","type":"education","lineage":["https://openalex.org/I146620803"]},{"id":"https://openalex.org/I4400573270","display_name":"Wenzhou University of Technology","ror":"https://ror.org/03dd7qj98","country_code":null,"type":"education","lineage":["https://openalex.org/I4400573270"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Linlin Zhuo","raw_affiliation_strings":["School of Data Science and Artificial Intelligence, Wenzhou University of Technology, Wenzhou, China"],"affiliations":[{"raw_affiliation_string":"School of Data Science and Artificial Intelligence, Wenzhou University of Technology, Wenzhou, China","institution_ids":["https://openalex.org/I146620803","https://openalex.org/I4400573270"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100405157","display_name":"Yifan Chen","orcid":"https://orcid.org/0000-0003-4880-3489"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yifan Chen","raw_affiliation_strings":["College of Computer Science and Electronic Engineering, Hunan University, Changsha, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University, Changsha, China","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044283271","display_name":"Xiangzheng Fu","orcid":"https://orcid.org/0000-0001-6840-2573"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiangzheng Fu","raw_affiliation_strings":["College of Computer Science and Electronic Engineering, Hunan University, Changsha, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University, Changsha, China","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027286013","display_name":"Xiangxiang Zeng","orcid":"https://orcid.org/0000-0001-6201-0114"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiangxiang Zeng","raw_affiliation_strings":["College of Computer Science and Electronic Engineering, Hunan University, Changsha, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University, Changsha, China","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017426085","display_name":"Quan Zou","orcid":"https://orcid.org/0000-0001-6406-1142"},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Quan Zou","raw_affiliation_strings":["Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu, China"],"affiliations":[{"raw_affiliation_string":"Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu, China","institution_ids":["https://openalex.org/I150229711"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5004683765","https://openalex.org/A5017426085","https://openalex.org/A5027286013","https://openalex.org/A5044283271","https://openalex.org/A5100405157","https://openalex.org/A5107911773"],"corresponding_institution_ids":["https://openalex.org/I146620803","https://openalex.org/I150229711","https://openalex.org/I16609230","https://openalex.org/I4400573270"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":2.5091,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.89753673,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"20","issue":"8","first_page":"e1012400","last_page":"e1012400"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6777467131614685},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5779778957366943},{"id":"https://openalex.org/keywords/encoder","display_name":"Encoder","score":0.5101557374000549},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.428517609834671},{"id":"https://openalex.org/keywords/interdependence","display_name":"Interdependence","score":0.4149993360042572},{"id":"https://openalex.org/keywords/noise","display_name":"Noise (video)","score":0.41285285353660583},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.40487000346183777},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.37274911999702454},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.32698461413383484},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.1288520097732544},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12595424056053162}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6777467131614685},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5779778957366943},{"id":"https://openalex.org/C118505674","wikidata":"https://www.wikidata.org/wiki/Q42586063","display_name":"Encoder","level":2,"score":0.5101557374000549},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.428517609834671},{"id":"https://openalex.org/C185874996","wikidata":"https://www.wikidata.org/wiki/Q269699","display_name":"Interdependence","level":2,"score":0.4149993360042572},{"id":"https://openalex.org/C99498987","wikidata":"https://www.wikidata.org/wiki/Q2210247","display_name":"Noise (video)","level":3,"score":0.41285285353660583},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.40487000346183777},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.37274911999702454},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.32698461413383484},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.1288520097732544},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12595424056053162},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009857","descriptor_name":"Oncogenes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009857","descriptor_name":"Oncogenes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009857","descriptor_name":"Oncogenes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009857","descriptor_name":"Oncogenes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D052138","descriptor_name":"Genes, Neoplasm","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D052138","descriptor_name":"Genes, Neoplasm","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D052138","descriptor_name":"Genes, Neoplasm","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D052138","descriptor_name":"Genes, Neoplasm","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1371/journal.pcbi.1012400","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1012400","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:39213450","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39213450","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11392234","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11392234","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11392234/pdf/pcbi.1012400.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1012400","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1012400","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.8999999761581421,"id":"https://metadata.un.org/sdg/7","display_name":"Affordable and clean energy"}],"awards":[{"id":"https://openalex.org/G1231421488","display_name":null,"funder_award_id":"under","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G552737822","display_name":null,"funder_award_id":"62372158","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G632310686","display_name":null,"funder_award_id":"62172158","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7676913961","display_name":null,"funder_award_id":"62302339","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7726157001","display_name":null,"funder_award_id":"Grant No.","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":50,"referenced_works":["https://openalex.org/W1525676863","https://openalex.org/W1967940883","https://openalex.org/W2009720434","https://openalex.org/W2035421116","https://openalex.org/W2044433401","https://openalex.org/W2058539819","https://openalex.org/W2096460732","https://openalex.org/W2104885506","https://openalex.org/W2117692326","https://openalex.org/W2117977572","https://openalex.org/W2131773109","https://openalex.org/W2131848047","https://openalex.org/W2134508297","https://openalex.org/W2148266291","https://openalex.org/W2148606196","https://openalex.org/W2152061559","https://openalex.org/W2162151166","https://openalex.org/W2168303063","https://openalex.org/W2468907370","https://openalex.org/W2519887557","https://openalex.org/W2537679995","https://openalex.org/W2781907489","https://openalex.org/W2900569176","https://openalex.org/W2915168078","https://openalex.org/W2949066452","https://openalex.org/W2964015378","https://openalex.org/W2964321699","https://openalex.org/W3014963373","https://openalex.org/W3028304854","https://openalex.org/W3093814892","https://openalex.org/W3129140812","https://openalex.org/W3156270925","https://openalex.org/W3177474461","https://openalex.org/W3198168376","https://openalex.org/W3206417123","https://openalex.org/W4206091203","https://openalex.org/W4210917993","https://openalex.org/W4220802507","https://openalex.org/W4239890145","https://openalex.org/W4283719145","https://openalex.org/W4287754915","https://openalex.org/W4295885518","https://openalex.org/W4297733535","https://openalex.org/W4306647835","https://openalex.org/W4313414016","https://openalex.org/W4317942129","https://openalex.org/W4322503300","https://openalex.org/W4328007709","https://openalex.org/W4365460342","https://openalex.org/W4367844888"],"related_works":["https://openalex.org/W2139079562","https://openalex.org/W2749324135","https://openalex.org/W2908433117","https://openalex.org/W2969604939","https://openalex.org/W2378306841","https://openalex.org/W114687057","https://openalex.org/W3122988618","https://openalex.org/W1994631104","https://openalex.org/W3146908316","https://openalex.org/W2382776042"],"abstract_inverted_index":{"The":[0],"identification":[1],"of":[2,19,75],"cancer":[3],"driver":[4],"genes":[5,15,70],"(CDGs)":[6],"poses":[7],"challenges":[8],"due":[9],"to":[10,42,89,111,129,147,170],"the":[11,17,40,49,66,73,105,109,130,133,161],"intricate":[12],"interdependencies":[13,68],"among":[14,69],"and":[16,22,154],"influence":[18],"measurement":[20],"errors":[21],"noise.":[23,77],"We":[24,78,93,157],"propose":[25],"a":[26,164],"novel":[27],"energy-constrained":[28],"diffusion":[29],"(ECD)-based":[30],"model":[31,38,107,135,162],"for":[32],"identifying":[33,117],"CDGs,":[34],"termed":[35],"ECD-CDGI.":[36],"This":[37],"is":[39,152],"first":[41],"design":[43],"an":[44,53],"ECD-Attention":[45,56],"encoder":[46,57],"by":[47,139],"combining":[48],"ECD":[50],"technique":[51],"with":[52],"attention":[54],"mechanism.":[55],"excels":[58],"at":[59],"generating":[60],"robust":[61],"gene":[62,91],"representations":[63],"that":[64,104],"reveal":[65],"complex":[67],"while":[71],"reducing":[72],"impact":[74],"data":[76],"concatenate":[79],"topological":[80],"embedding":[81],"extracted":[82],"from":[83],"gene-gene":[84,141],"networks":[85],"through":[86],"graph":[87],"transformers":[88],"these":[90],"representations.":[92],"conduct":[94],"extensive":[95],"experiments":[96,102],"across":[97],"three":[98],"testing":[99],"scenarios.":[100],"Extensive":[101],"show":[103],"ECD-CDGI":[106,134,151],"possesses":[108],"ability":[110],"not":[112],"only":[113],"be":[114],"proficient":[115],"in":[116],"known":[118],"CDGs":[119,176],"but":[120],"also":[121,159],"efficiently":[122],"uncover":[123],"unknown":[124],"potential":[125],"CDGs.":[126,149],"Furthermore,":[127],"compared":[128],"GNN-based":[131],"approach,":[132],"exhibits":[136],"fewer":[137],"constraints":[138],"existing":[140],"networks,":[142],"thereby":[143],"enhancing":[144],"its":[145],"capability":[146],"identify":[148],"Additionally,":[150],"open-source":[153],"freely":[155],"available.":[156],"have":[158],"launched":[160],"as":[163],"complimentary":[165],"online":[166],"tool":[167],"specifically":[168],"crafted":[169],"expedite":[171],"research":[172],"efforts":[173],"focused":[174],"on":[175],"identification.":[177]},"counts_by_year":[{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":1}],"updated_date":"2026-04-13T07:58:08.660418","created_date":"2025-10-10T00:00:00"}
