{"id":"https://openalex.org/W4402218331","doi":"https://doi.org/10.1371/journal.pcbi.1012393","title":"HyperTraPS-CT: Inference and prediction for accumulation pathways with flexible data and model structures","display_name":"HyperTraPS-CT: Inference and prediction for accumulation pathways with flexible data and model structures","publication_year":2024,"publication_date":"2024-09-04","ids":{"openalex":"https://openalex.org/W4402218331","doi":"https://doi.org/10.1371/journal.pcbi.1012393","pmid":"https://pubmed.ncbi.nlm.nih.gov/39231165"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1012393","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1012393","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1371/journal.pcbi.1012393","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5094139376","display_name":"Olav N. L. Aga","orcid":"https://orcid.org/0009-0004-1610-9403"},"institutions":[{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]}],"countries":["NO"],"is_corresponding":true,"raw_author_name":"Olav N. L. Aga","raw_affiliation_strings":["Computational Biology Unit, University of Bergen, Bergen, Norway","Department of Clinical Science, University of Bergen, Bergen, Norway"],"raw_orcid":"https://orcid.org/0009-0004-1610-9403","affiliations":[{"raw_affiliation_string":"Computational Biology Unit, University of Bergen, Bergen, Norway","institution_ids":["https://openalex.org/I4432739"]},{"raw_affiliation_string":"Department of Clinical Science, University of Bergen, Bergen, Norway","institution_ids":["https://openalex.org/I4432739"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5106627410","display_name":"Morten Brun","orcid":"https://orcid.org/0000-0003-2860-8272"},"institutions":[{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Morten Brun","raw_affiliation_strings":["Department of Mathematics, University of Bergen, Bergen, Norway"],"raw_orcid":"https://orcid.org/0000-0003-2860-8272","affiliations":[{"raw_affiliation_string":"Department of Mathematics, University of Bergen, Bergen, Norway","institution_ids":["https://openalex.org/I4432739"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081766947","display_name":"Kazeem A. Dauda","orcid":"https://orcid.org/0000-0002-4392-8592"},"institutions":[{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Kazeem A. Dauda","raw_affiliation_strings":["Department of Mathematics, University of Bergen, Bergen, Norway"],"raw_orcid":"https://orcid.org/0000-0002-4392-8592","affiliations":[{"raw_affiliation_string":"Department of Mathematics, University of Bergen, Bergen, Norway","institution_ids":["https://openalex.org/I4432739"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080620893","display_name":"Ram\u00f3n D\u00edaz\u2010Uriarte","orcid":"https://orcid.org/0000-0002-6637-9039"},"institutions":[{"id":"https://openalex.org/I4210091816","display_name":"Instituto de Investigaciones Biom\u00e9dicas Sols-Morreale","ror":"https://ror.org/00ha1f767","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210091816","https://openalex.org/I63634437"]},{"id":"https://openalex.org/I63634437","display_name":"Universidad Aut\u00f3noma de Madrid","ror":"https://ror.org/01cby8j38","country_code":"ES","type":"education","lineage":["https://openalex.org/I63634437"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Ramon Diaz-Uriarte","raw_affiliation_strings":["Department of Biochemistry, School of Medicine, Universidad Autonoma de Madrid, Madrid, Spain","Instituto de Investigaciones Biomedicas Sols-Morreale (IIBM), CSIC-UAM, Madrid, Spain"],"raw_orcid":"https://orcid.org/0000-0002-6637-9039","affiliations":[{"raw_affiliation_string":"Department of Biochemistry, School of Medicine, Universidad Autonoma de Madrid, Madrid, Spain","institution_ids":["https://openalex.org/I63634437"]},{"raw_affiliation_string":"Instituto de Investigaciones Biomedicas Sols-Morreale (IIBM), CSIC-UAM, Madrid, Spain","institution_ids":["https://openalex.org/I4210091816","https://openalex.org/I63634437"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001655067","display_name":"Konstantinos Giannakis","orcid":"https://orcid.org/0000-0003-4199-6708"},"institutions":[{"id":"https://openalex.org/I1333353642","display_name":"Norwegian Institute of Public Health","ror":"https://ror.org/046nvst19","country_code":"NO","type":"funder","lineage":["https://openalex.org/I1333353642","https://openalex.org/I4210149801","https://openalex.org/I4210163359"]},{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Konstantinos Giannakis","raw_affiliation_strings":["Department of Disease Burden, Norwegian Institute of Public Health, Bergen, Norway","Department of Mathematics, University of Bergen, Bergen, Norway"],"raw_orcid":"https://orcid.org/0000-0003-4199-6708","affiliations":[{"raw_affiliation_string":"Department of Disease Burden, Norwegian Institute of Public Health, Bergen, Norway","institution_ids":["https://openalex.org/I1333353642"]},{"raw_affiliation_string":"Department of Mathematics, University of Bergen, Bergen, Norway","institution_ids":["https://openalex.org/I4432739"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016846029","display_name":"Iain G. Johnston","orcid":"https://orcid.org/0000-0001-8559-3519"},"institutions":[{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Iain G. Johnston","raw_affiliation_strings":["Computational Biology Unit, University of Bergen, Bergen, Norway","Department of Mathematics, University of Bergen, Bergen, Norway"],"raw_orcid":"https://orcid.org/0000-0001-8559-3519","affiliations":[{"raw_affiliation_string":"Computational Biology Unit, University of Bergen, Bergen, Norway","institution_ids":["https://openalex.org/I4432739"]},{"raw_affiliation_string":"Department of Mathematics, University of Bergen, Bergen, Norway","institution_ids":["https://openalex.org/I4432739"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5094139376"],"corresponding_institution_ids":["https://openalex.org/I4432739"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":3.9276,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.93956006,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"20","issue":"9","first_page":"e1012393","last_page":"e1012393"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12422","display_name":"Radiomics and Machine Learning in Medical Imaging","score":0.9588000178337097,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T12422","display_name":"Radiomics and Machine Learning in Medical Imaging","score":0.9588000178337097,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9383999705314636,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10522","display_name":"Medical Imaging Techniques and Applications","score":0.9276000261306763,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.7215414643287659},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5031160712242126},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.48564067482948303},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4313443899154663},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.35246968269348145},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2954784333705902}],"concepts":[{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.7215414643287659},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5031160712242126},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.48564067482948303},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4313443899154663},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.35246968269348145},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2954784333705902}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009169","descriptor_name":"Mycobacterium tuberculosis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009169","descriptor_name":"Mycobacterium tuberculosis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009169","descriptor_name":"Mycobacterium tuberculosis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009169","descriptor_name":"Mycobacterium tuberculosis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1371/journal.pcbi.1012393","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1012393","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:39231165","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39231165","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11404842","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11404842","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11404842/pdf/pcbi.1012393.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"},{"id":"pmh:oai:RePEc:plo:pcbi00:1012393","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1012393","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:repositorio.uam.es:10486/718818","is_oa":true,"landing_page_url":"http://hdl.handle.net/10486/718818","pdf_url":null,"source":{"id":"https://openalex.org/S4306400963","display_name":"Biblos-e Archivo (Universidad Aut\u00f3noma de Madrid)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I63634437","host_organization_name":"Universidad Aut\u00f3noma de Madrid","host_organization_lineage":["https://openalex.org/I63634437"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1012393","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1012393","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6600000262260437,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G2262748287","display_name":null,"funder_award_id":"501100011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G3480869486","display_name":null,"funder_award_id":"13039","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G3681454997","display_name":null,"funder_award_id":"13039/501100011033","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4042783231","display_name":null,"funder_award_id":"501100011033","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4284310781","display_name":null,"funder_award_id":"PID2019-111256RB-I00","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G6951923247","display_name":"Uncovering and engineering the principles governing evolution and cellular control of bioenergetic organelles","funder_award_id":"805046","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G7084143925","display_name":null,"funder_award_id":"AEI/10","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G7266728691","display_name":null,"funder_award_id":"13039/501100011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G7513016640","display_name":null,"funder_award_id":"TMS2020TMT11","funder_id":"https://openalex.org/F4320316417","funder_display_name":"Trond Mohn stiftelse"},{"id":"https://openalex.org/G7678654769","display_name":null,"funder_award_id":"805046","funder_id":"https://openalex.org/F4320338453","funder_display_name":"HORIZON EUROPE European Research Council"},{"id":"https://openalex.org/G7821318236","display_name":null,"funder_award_id":"TMS2021TMT09","funder_id":"https://openalex.org/F4320316417","funder_display_name":"Trond Mohn stiftelse"},{"id":"https://openalex.org/G7842005466","display_name":null,"funder_award_id":"Horizon 2020","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8684520763","display_name":null,"funder_award_id":"PID2019","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"}],"funders":[{"id":"https://openalex.org/F4320316417","display_name":"Trond Mohn stiftelse","ror":null},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320322930","display_name":"Ministerio de Ciencia e Innovaci\u00f3n","ror":"https://ror.org/034900433"},{"id":"https://openalex.org/F4320335598","display_name":"Agencia Estatal de Investigaci\u00f3n","ror":null},{"id":"https://openalex.org/F4320338453","display_name":"HORIZON EUROPE European Research Council","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":54,"referenced_works":["https://openalex.org/W1605984840","https://openalex.org/W1991874243","https://openalex.org/W2030831143","https://openalex.org/W2039577063","https://openalex.org/W2069196178","https://openalex.org/W2109077054","https://openalex.org/W2122082385","https://openalex.org/W2134871125","https://openalex.org/W2149958386","https://openalex.org/W2153938747","https://openalex.org/W2167365278","https://openalex.org/W2169390877","https://openalex.org/W2171059556","https://openalex.org/W2233432342","https://openalex.org/W2253465175","https://openalex.org/W2275786356","https://openalex.org/W2280923288","https://openalex.org/W2327639708","https://openalex.org/W2340974016","https://openalex.org/W2513118531","https://openalex.org/W2588969809","https://openalex.org/W2594022964","https://openalex.org/W2606156256","https://openalex.org/W2772124661","https://openalex.org/W2801141004","https://openalex.org/W2897562111","https://openalex.org/W2924124844","https://openalex.org/W2951391875","https://openalex.org/W2955648521","https://openalex.org/W2961700348","https://openalex.org/W2965390994","https://openalex.org/W2990080810","https://openalex.org/W3034877140","https://openalex.org/W3043360772","https://openalex.org/W3093815480","https://openalex.org/W3110394251","https://openalex.org/W3121129792","https://openalex.org/W3122702518","https://openalex.org/W3127809696","https://openalex.org/W3182789354","https://openalex.org/W3196940838","https://openalex.org/W3207963044","https://openalex.org/W4226155266","https://openalex.org/W4241418020","https://openalex.org/W4251560490","https://openalex.org/W4287086359","https://openalex.org/W4307344950","https://openalex.org/W4311287631","https://openalex.org/W4381597408","https://openalex.org/W4390885169","https://openalex.org/W4396966029","https://openalex.org/W4399406220","https://openalex.org/W4400255020","https://openalex.org/W6789056941"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052","https://openalex.org/W4402327032","https://openalex.org/W2382290278"],"abstract_inverted_index":{"Accumulation":[0],"processes,":[1],"where":[2],"many":[3],"potentially":[4],"coupled":[5],"features":[6,128],"are":[7],"acquired":[8],"over":[9],"time,":[10],"occur":[11],"throughout":[12],"the":[13,24,33,96,161,184,192],"sciences":[14],"from":[15],"evolutionary":[16],"biology":[17],"to":[18,70,100,131,140,180,205],"disease":[19],"progression,":[20],"and":[21,91,105,121,136,146,150,167,171,191,203],"particularly":[22],"in":[23,67,82,89,188,198],"study":[25],"of":[26,35,57,77,98,127,148,158,164,186,194],"cancer":[27,189],"progression.":[28],"Existing":[29],"methods":[30],"for":[31,87,160,173],"learning":[32],"dynamics":[34,76],"such":[36],"systems":[37],"typically":[38],"assume":[39],"limited":[40,130],"(often":[41],"pairwise)":[42],"relationships":[43],"between":[44,124],"feature":[45,52,174],"subsets,":[46],"cross-sectional":[47],"or":[48,54,113],"untimed":[49],"observations,":[50],"small":[51],"sets,":[53],"discrete":[55],"orderings":[56],"events.":[58],"Here":[59],"we":[60],"introduce":[61,155],"HyperTraPS-CT":[62,99,118],"(Hypercubic":[63],"Transition":[64],"Path":[65],"Sampling":[66],"Continuous":[68],"Time)":[69],"compute":[71],"posterior":[72],"distributions":[73],"on":[74,183],"continuous-time":[75],"many,":[78],"arbitrarily":[79],"coupled,":[80],"traits":[81],"unrestricted":[83],"state":[84],"spaces,":[85],"accounting":[86],"uncertainty":[88],"observations":[90],"their":[92],"timings.":[93],"We":[94,153,176],"demonstrate":[95,168],"capacity":[97,204],"deal":[101],"with":[102,209],"cross-sectional,":[103],"longitudinal,":[104],"phylogenetic":[106],"data,":[107],"which":[108],"may":[109],"have":[110],"no,":[111],"uncertain,":[112],"precisely":[114],"specified":[115],"sampling":[116],"times.":[117],"allows":[119],"positive":[120],"negative":[122],"interactions":[123],"arbitrary":[125],"subsets":[126],"(not":[129],"pairwise":[132],"interactions),":[133],"supporting":[134],"Bayesian":[135],"maximum-likelihood":[137],"inference":[138],"approaches":[139],"identify":[141],"these":[142,165],"interactions,":[143],"consequent":[144],"pathways,":[145],"predictions":[147,207],"future":[149],"unobserved":[151],"features.":[152],"also":[154],"a":[156],"range":[157],"visualisations":[159],"inferred":[162],"outputs":[163],"processes":[166],"model":[169],"selection":[170],"regularisation":[172],"interactions.":[175],"apply":[177],"this":[178],"approach":[179],"case":[181],"studies":[182],"accumulation":[185],"mutations":[187],"progression":[190],"acquisition":[193],"anti-microbial":[195],"resistance":[196],"genes":[197],"tuberculosis,":[199],"demonstrating":[200],"its":[201],"flexibility":[202],"produce":[206],"aligned":[208],"applied":[210],"priorities.":[211]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":1}],"updated_date":"2026-05-05T08:41:31.759640","created_date":"2025-10-10T00:00:00"}
