{"id":"https://openalex.org/W4402576191","doi":"https://doi.org/10.1371/journal.pcbi.1012359","title":"Measuring and understanding information storage and transfer in a simulated human gut microbiome","display_name":"Measuring and understanding information storage and transfer in a simulated human gut microbiome","publication_year":2024,"publication_date":"2024-09-17","ids":{"openalex":"https://openalex.org/W4402576191","doi":"https://doi.org/10.1371/journal.pcbi.1012359","pmid":"https://pubmed.ncbi.nlm.nih.gov/39288161"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1012359","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1012359","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1012359&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1012359&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089456006","display_name":"Hannah Zoller","orcid":"https://orcid.org/0000-0003-1823-5249"},"institutions":[{"id":"https://openalex.org/I4210152878","display_name":"GFZ Helmholtz Centre for Geosciences","ror":"https://ror.org/04z8jg394","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I4210152878"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Hannah Zoller","raw_affiliation_strings":["Department Geoinformation, Helmholtz Centre Potsdam - GFZ German Research Centre for Geosciences, Potsdam, Germany"],"raw_orcid":"https://orcid.org/0000-0003-1823-5249","affiliations":[{"raw_affiliation_string":"Department Geoinformation, Helmholtz Centre Potsdam - GFZ German Research Centre for Geosciences, Potsdam, Germany","institution_ids":["https://openalex.org/I4210152878"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113385682","display_name":"Carlos Garcia Perez","orcid":null},"institutions":[{"id":"https://openalex.org/I3018134672","display_name":"Helmholtz Munich","ror":"https://ror.org/00cfam450","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672"]},{"id":"https://openalex.org/I4210086093","display_name":"Bavarian Research Institute for Digital Transformation","ror":"https://ror.org/00h539j16","country_code":"DE","type":"facility","lineage":["https://openalex.org/I109144446","https://openalex.org/I4210086093"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Carlos Garcia Perez","raw_affiliation_strings":["DIGIT Digital Transformation & IT, Helmholtz Munich, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"DIGIT Digital Transformation & IT, Helmholtz Munich, Germany","institution_ids":["https://openalex.org/I3018134672","https://openalex.org/I4210086093"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114227835","display_name":"Javier Betel Geijo Fern\u00e1ndez","orcid":null},"institutions":[{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Javier Betel Geijo Fern\u00e1ndez","raw_affiliation_strings":["Department of Microbiology and Ecosystem Science, University of Vienna, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Microbiology and Ecosystem Science, University of Vienna, Austria","institution_ids":["https://openalex.org/I129774422"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5008366504","display_name":"Wolfgang zu Castell","orcid":"https://orcid.org/0000-0003-2820-6564"},"institutions":[{"id":"https://openalex.org/I4210152878","display_name":"GFZ Helmholtz Centre for Geosciences","ror":"https://ror.org/04z8jg394","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I4210152878"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Wolfgang zu Castell","raw_affiliation_strings":["Department Geoinformation, Helmholtz Centre Potsdam - GFZ German Research Centre for Geosciences, Potsdam, Germany","Department of Mathematics, Technical University of Munich, Germany"],"raw_orcid":"https://orcid.org/0000-0003-2820-6564","affiliations":[{"raw_affiliation_string":"Department Geoinformation, Helmholtz Centre Potsdam - GFZ German Research Centre for Geosciences, Potsdam, Germany","institution_ids":["https://openalex.org/I4210152878"]},{"raw_affiliation_string":"Department of Mathematics, Technical University of Munich, Germany","institution_ids":["https://openalex.org/I62916508"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5089456006"],"corresponding_institution_ids":["https://openalex.org/I4210152878"],"apc_list":{"value":3043,"currency":"USD","value_usd":3043},"apc_paid":{"value":3043,"currency":"USD","value_usd":3043},"fwci":0.3187,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.56554399,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":97},"biblio":{"volume":"20","issue":"9","first_page":"e1012359","last_page":"e1012359"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9695000052452087,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9186999797821045,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microbiome","display_name":"Microbiome","score":0.634902834892273},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5963068604469299},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5542440414428711},{"id":"https://openalex.org/keywords/information-transfer","display_name":"Information transfer","score":0.5186542868614197},{"id":"https://openalex.org/keywords/abundance","display_name":"Abundance (ecology)","score":0.4835486114025116},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.4646705090999603},{"id":"https://openalex.org/keywords/information-theory","display_name":"Information theory","score":0.4546948969364166},{"id":"https://openalex.org/keywords/temporal-scales","display_name":"Temporal scales","score":0.4260806739330292},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.29807400703430176},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.25156545639038086},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.1949630081653595},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.10768914222717285}],"concepts":[{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.634902834892273},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5963068604469299},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5542440414428711},{"id":"https://openalex.org/C8854915","wikidata":"https://www.wikidata.org/wiki/Q4350200","display_name":"Information transfer","level":2,"score":0.5186542868614197},{"id":"https://openalex.org/C77077793","wikidata":"https://www.wikidata.org/wiki/Q336019","display_name":"Abundance (ecology)","level":2,"score":0.4835486114025116},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.4646705090999603},{"id":"https://openalex.org/C52622258","wikidata":"https://www.wikidata.org/wiki/Q131222","display_name":"Information theory","level":2,"score":0.4546948969364166},{"id":"https://openalex.org/C2777489503","wikidata":"https://www.wikidata.org/wiki/Q7698936","display_name":"Temporal scales","level":2,"score":0.4260806739330292},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.29807400703430176},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.25156545639038086},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.1949630081653595},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.10768914222717285},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true},{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true},{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true},{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true},{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1371/journal.pcbi.1012359","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1012359","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1012359&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:39288161","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39288161","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":"Journal Article"},{"id":"pmh:oai:gfzpublic.gfz-potsdam.de:item_5028070","is_oa":true,"landing_page_url":"https://gfzpublic.gfz-potsdam.de/pubman/item/item_5028070","pdf_url":"https://gfzpublic.gfz-potsdam.de/pubman/item/item_5028070_1/component/file_5028097/5028070.pdf","source":{"id":"https://openalex.org/S4306401313","display_name":"Publication Database GFZ (GFZ German Research Centre for Geosciences)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210152878","host_organization_name":"GFZ Helmholtz Centre for Geosciences","host_organization_lineage":["https://openalex.org/I4210152878"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLOS Computational Biology","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:gfzpublic.gfz.de:item_5028070","is_oa":true,"landing_page_url":"https://gfzpublic.gfz.de/pubman/item/item_5028070","pdf_url":"https://gfzpublic.gfz.de/pubman/item/item_5028070_1/component/file_5028097/5028070.pdf","source":{"id":"https://openalex.org/S4306401313","display_name":"Publication Database GFZ (GFZ German Research Centre for Geosciences)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210152878","host_organization_name":"GFZ Helmholtz Centre for Geosciences","host_organization_lineage":["https://openalex.org/I4210152878"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLOS Computational Biology","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:11407623","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11407623","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11407623/pdf/pcbi.1012359.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"},{"id":"pmh:oai:push-zb.helmholtz-munich.de:71743","is_oa":true,"landing_page_url":"https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=71743","pdf_url":"https://push-zb.helmholtz-munich.de/deliver.php?id=36483","source":{"id":"https://openalex.org/S7407055352","display_name":"PuSH - Publication Server of Helmholtz Zentrum M\u00fcnchen","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput. Biol. 20:e1012359 (2024)","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:6e5518dd4ace4c9a9a99f8e74dcd1927","is_oa":false,"landing_page_url":"https://doaj.org/article/6e5518dd4ace4c9a9a99f8e74dcd1927","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 20, Iss 9, p e1012359 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1012359","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1012359","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1012359&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/12","display_name":"Responsible consumption and production","score":0.5}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4402576191.pdf","grobid_xml":"https://content.openalex.org/works/W4402576191.grobid-xml"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W816410171","https://openalex.org/W1556913189","https://openalex.org/W1976397547","https://openalex.org/W1982483391","https://openalex.org/W2020398205","https://openalex.org/W2037833069","https://openalex.org/W2041782669","https://openalex.org/W2049091354","https://openalex.org/W2050334647","https://openalex.org/W2063032535","https://openalex.org/W2070115517","https://openalex.org/W2076262841","https://openalex.org/W2123029908","https://openalex.org/W2152538010","https://openalex.org/W2182494793","https://openalex.org/W2183388983","https://openalex.org/W2478708596","https://openalex.org/W2559597060","https://openalex.org/W2561675875","https://openalex.org/W2617261748","https://openalex.org/W2619026791","https://openalex.org/W2801150515","https://openalex.org/W2948909067","https://openalex.org/W3000697781","https://openalex.org/W3012568092","https://openalex.org/W3027658010","https://openalex.org/W3030972254","https://openalex.org/W3105461111","https://openalex.org/W3154625295","https://openalex.org/W4210606625","https://openalex.org/W4388299828"],"related_works":["https://openalex.org/W4290742204","https://openalex.org/W1595266364","https://openalex.org/W2492100837","https://openalex.org/W3032013634","https://openalex.org/W4224256769","https://openalex.org/W3040099050","https://openalex.org/W2973330265","https://openalex.org/W1994610125","https://openalex.org/W1990625467","https://openalex.org/W4377861091"],"abstract_inverted_index":{"Considering":[0],"biological":[1],"systems":[2],"as":[3,98,123,130],"information":[4,63,96,113,142,178],"processing":[5],"entities":[6],"and":[7,46,129,170],"analyzing":[8],"their":[9],"organizational":[10],"structure":[11],"via":[12],"information-theoretic":[13],"measures":[14,65,144],"has":[15],"become":[16],"an":[17,99],"established":[18],"approach":[19],"in":[20,72,105,118,173],"life":[21],"sciences.":[22],"We":[23,38],"transfer":[24,114],"this":[25,138],"framework":[26],"to":[27,49,78,126],"a":[28,41,51,58,73,124,131],"field":[29],"of":[30,94,101,133,167,176],"broad":[31],"general":[32],"interest,":[33],"the":[34,67,79,83,92,106,119,160,174],"human":[35,53],"gut":[36],"microbiome.":[37],"use":[39],"BacArena,":[40],"software":[42],"combining":[43],"agent-based":[44],"modelling":[45],"flux-balance":[47],"analysis,":[48],"simulate":[50],"simplified":[52],"intestinal":[54],"microbiome":[55],"(SIHUMI).":[56],"In":[57,137],"first":[59],"step,":[60,75],"we":[61,110,156],"derive":[62],"theoretic":[64,143],"from":[66],"simulated":[68],"abundance":[69,84],"data,":[70],"and,":[71],"second":[74],"relate":[76],"them":[77],"metabolic":[80,150],"processes":[81],"underlying":[82],"data.":[85],"Our":[86],"study":[87],"provides":[88],"further":[89],"evidence":[90],"on":[91,149,159],"role":[93],"active":[95],"storage":[97],"indicator":[100],"unexpected":[102],"structural":[103],"change":[104],"observed":[107],"system.":[108],"Besides,":[109],"show":[111],"that":[112],"reflects":[115],"coherent":[116],"behavior":[117],"microbial":[120],"community,":[121],"both":[122],"reaction":[125],"environmental":[127],"changes":[128],"result":[132],"direct":[134],"effective":[135],"interaction.":[136],"sense,":[139],"purely":[140],"abundance-based":[141],"can":[145],"provide":[146],"meaningful":[147],"insight":[148],"interactions":[151],"within":[152],"bacterial":[153],"communities.":[154],"Furthermore,":[155],"shed":[157],"light":[158],"important":[161],"however":[162],"little":[163],"noticed":[164],"technical":[165],"aspect":[166],"distinguishing":[168],"immediate":[169],"delayed":[171],"effects":[172],"interpretation":[175],"local":[177],"theoretical":[179],"measures.":[180]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
