{"id":"https://openalex.org/W4399601913","doi":"https://doi.org/10.1371/journal.pcbi.1012227","title":"An algorithm to build synthetic temporal contact networks based on close-proximity interactions data","display_name":"An algorithm to build synthetic temporal contact networks based on close-proximity interactions data","publication_year":2024,"publication_date":"2024-06-13","ids":{"openalex":"https://openalex.org/W4399601913","doi":"https://doi.org/10.1371/journal.pcbi.1012227","pmid":"https://pubmed.ncbi.nlm.nih.gov/38870216"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1012227","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1012227","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1012227&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1012227&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060536855","display_name":"Audrey Duval","orcid":"https://orcid.org/0000-0002-1376-4101"},"institutions":[{"id":"https://openalex.org/I124158823","display_name":"Conservatoire National des Arts et M\u00e9tiers","ror":"https://ror.org/0175hh227","country_code":"FR","type":"education","lineage":["https://openalex.org/I124158823","https://openalex.org/I4210134562"]},{"id":"https://openalex.org/I1298580462","display_name":"Institut de Veille Sanitaire","ror":"https://ror.org/04q5j9b45","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I1298580462"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I157536573"]},{"id":"https://openalex.org/I195731000","display_name":"Universit\u00e9 de Versailles Saint-Quentin-en-Yvelines","ror":"https://ror.org/03mkjjy25","country_code":"FR","type":"education","lineage":["https://openalex.org/I195731000","https://openalex.org/I277688954"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210103698","display_name":"Centre de recherche en Epid\u00e9miologie et Sant\u00e9 des Populations","ror":"https://ror.org/01ed4t417","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I195731000","https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I4210097159","https://openalex.org/I4210097159","https://openalex.org/I4210103698","https://openalex.org/I4210164847","https://openalex.org/I4405259118"]},{"id":"https://openalex.org/I4210133725","display_name":"CNR de la R\u00e9sistance aux Antibiotiques","ror":"https://ror.org/044yd5h03","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210133725"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Audrey Duval","raw_affiliation_strings":["INSERM, Universit\u00e9 Paris-Saclay, Universit\u00e9 de Versailles St-Quentin-en-Yvelines, Team Echappement aux Anti-infectieux et Pharmaco\u00e9pid\u00e9miologie U1018, CESP, Versailles, France","Institut Pasteur, Universit\u00e9 Paris Cit\u00e9, Epidemiology and Modelling of Bacterial Escape to Antimicrobials (EMEA), Paris, France","Laboratoire Mod\u00e9lisation, Epid\u00e9miologie et Surveillance des Risques Sanitaires (MESuRS), Conservatoire National des Arts et M\u00e9tiers, Paris, France","MESuRS - Laboratoire Mod\u00e9lisation, \u00e9pid\u00e9miologie et surveillance des risques sanitaires (292 rue Saint-Martin F-75141 Paris C\u00e9dex 03 - France)","EMAE - Epid\u00e9miologie et mod\u00e9lisation de la r\u00e9sistance aux antimicrobiens - Epidemiology and modelling of bacterial escape to antimicrobials (25-28 rue du Docteur Roux, 75724 Paris Cedex 15 - France)","CESP - Centre de recherche en \u00e9pid\u00e9miologie et sant\u00e9 des populations (16 avenue Paul Vaillant Couturier 94807 Villejuif Cedex, France - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INSERM, Universit\u00e9 Paris-Saclay, Universit\u00e9 de Versailles St-Quentin-en-Yvelines, Team Echappement aux Anti-infectieux et Pharmaco\u00e9pid\u00e9miologie U1018, CESP, Versailles, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I4210103698","https://openalex.org/I195731000","https://openalex.org/I277688954"]},{"raw_affiliation_string":"Institut Pasteur, Universit\u00e9 Paris Cit\u00e9, Epidemiology and Modelling of Bacterial Escape to Antimicrobials (EMEA), Paris, France","institution_ids":["https://openalex.org/I157536573","https://openalex.org/I204730241"]},{"raw_affiliation_string":"Laboratoire Mod\u00e9lisation, Epid\u00e9miologie et Surveillance des Risques Sanitaires (MESuRS), Conservatoire National des Arts et M\u00e9tiers, Paris, France","institution_ids":["https://openalex.org/I124158823"]},{"raw_affiliation_string":"MESuRS - Laboratoire Mod\u00e9lisation, \u00e9pid\u00e9miologie et surveillance des risques sanitaires (292 rue Saint-Martin F-75141 Paris C\u00e9dex 03 - France)","institution_ids":["https://openalex.org/I1298580462"]},{"raw_affiliation_string":"EMAE - Epid\u00e9miologie et mod\u00e9lisation de la r\u00e9sistance aux antimicrobiens - Epidemiology and modelling of bacterial escape to antimicrobials (25-28 rue du Docteur Roux, 75724 Paris Cedex 15 - France)","institution_ids":["https://openalex.org/I4210133725"]},{"raw_affiliation_string":"CESP - Centre de recherche en \u00e9pid\u00e9miologie et sant\u00e9 des populations (16 avenue Paul Vaillant Couturier 94807 Villejuif Cedex, France - France)","institution_ids":["https://openalex.org/I4210103698"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001148118","display_name":"Quentin J. Leclerc","orcid":"https://orcid.org/0000-0003-4761-001X"},"institutions":[{"id":"https://openalex.org/I124158823","display_name":"Conservatoire National des Arts et M\u00e9tiers","ror":"https://ror.org/0175hh227","country_code":"FR","type":"education","lineage":["https://openalex.org/I124158823","https://openalex.org/I4210134562"]},{"id":"https://openalex.org/I1298580462","display_name":"Institut de Veille Sanitaire","ror":"https://ror.org/04q5j9b45","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I1298580462"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I157536573"]},{"id":"https://openalex.org/I195731000","display_name":"Universit\u00e9 de Versailles Saint-Quentin-en-Yvelines","ror":"https://ror.org/03mkjjy25","country_code":"FR","type":"education","lineage":["https://openalex.org/I195731000","https://openalex.org/I277688954"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210103698","display_name":"Centre de recherche en Epid\u00e9miologie et Sant\u00e9 des Populations","ror":"https://ror.org/01ed4t417","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I195731000","https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I4210097159","https://openalex.org/I4210097159","https://openalex.org/I4210103698","https://openalex.org/I4210164847","https://openalex.org/I4405259118"]},{"id":"https://openalex.org/I4210133725","display_name":"CNR de la R\u00e9sistance aux Antibiotiques","ror":"https://ror.org/044yd5h03","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210133725"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Quentin J. Leclerc","raw_affiliation_strings":["INSERM, Universit\u00e9 Paris-Saclay, Universit\u00e9 de Versailles St-Quentin-en-Yvelines, Team Echappement aux Anti-infectieux et Pharmaco\u00e9pid\u00e9miologie U1018, CESP, Versailles, France","Institut Pasteur, Universit\u00e9 Paris Cit\u00e9, Epidemiology and Modelling of Bacterial Escape to Antimicrobials (EMEA), Paris, France","Laboratoire Mod\u00e9lisation, Epid\u00e9miologie et Surveillance des Risques Sanitaires (MESuRS), Conservatoire National des Arts et M\u00e9tiers, Paris, France","CESP - Centre de recherche en \u00e9pid\u00e9miologie et sant\u00e9 des populations (16 avenue Paul Vaillant Couturier 94807 Villejuif Cedex, France - France)","EMAE - Epid\u00e9miologie et mod\u00e9lisation de la r\u00e9sistance aux antimicrobiens - Epidemiology and modelling of bacterial escape to antimicrobials (25-28 rue du Docteur Roux, 75724 Paris Cedex 15 - France)","MESuRS - Laboratoire Mod\u00e9lisation, \u00e9pid\u00e9miologie et surveillance des risques sanitaires (292 rue Saint-Martin F-75141 Paris C\u00e9dex 03 - France)"],"raw_orcid":"https://orcid.org/0000-0003-4761-001X","affiliations":[{"raw_affiliation_string":"INSERM, Universit\u00e9 Paris-Saclay, Universit\u00e9 de Versailles St-Quentin-en-Yvelines, Team Echappement aux Anti-infectieux et Pharmaco\u00e9pid\u00e9miologie U1018, CESP, Versailles, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I4210103698","https://openalex.org/I195731000","https://openalex.org/I277688954"]},{"raw_affiliation_string":"Institut Pasteur, Universit\u00e9 Paris Cit\u00e9, Epidemiology and Modelling of Bacterial Escape to Antimicrobials (EMEA), Paris, France","institution_ids":["https://openalex.org/I157536573","https://openalex.org/I204730241"]},{"raw_affiliation_string":"Laboratoire Mod\u00e9lisation, Epid\u00e9miologie et Surveillance des Risques Sanitaires (MESuRS), Conservatoire National des Arts et M\u00e9tiers, Paris, France","institution_ids":["https://openalex.org/I124158823"]},{"raw_affiliation_string":"CESP - Centre de recherche en \u00e9pid\u00e9miologie et sant\u00e9 des populations (16 avenue Paul Vaillant Couturier 94807 Villejuif Cedex, France - France)","institution_ids":["https://openalex.org/I4210103698"]},{"raw_affiliation_string":"EMAE - Epid\u00e9miologie et mod\u00e9lisation de la r\u00e9sistance aux antimicrobiens - Epidemiology and modelling of bacterial escape to antimicrobials (25-28 rue du Docteur Roux, 75724 Paris Cedex 15 - France)","institution_ids":["https://openalex.org/I4210133725"]},{"raw_affiliation_string":"MESuRS - Laboratoire Mod\u00e9lisation, \u00e9pid\u00e9miologie et surveillance des risques sanitaires (292 rue Saint-Martin F-75141 Paris C\u00e9dex 03 - France)","institution_ids":["https://openalex.org/I1298580462"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068874661","display_name":"Didier Guillemot","orcid":"https://orcid.org/0000-0002-8497-1765"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I157536573"]},{"id":"https://openalex.org/I195731000","display_name":"Universit\u00e9 de Versailles Saint-Quentin-en-Yvelines","ror":"https://ror.org/03mkjjy25","country_code":"FR","type":"education","lineage":["https://openalex.org/I195731000","https://openalex.org/I277688954"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210097159","display_name":"Assistance Publique \u2013 H\u00f4pitaux de Paris","ror":"https://ror.org/00pg5jh14","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I4210097159"]},{"id":"https://openalex.org/I4210103698","display_name":"Centre de recherche en Epid\u00e9miologie et Sant\u00e9 des Populations","ror":"https://ror.org/01ed4t417","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I195731000","https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I4210097159","https://openalex.org/I4210097159","https://openalex.org/I4210103698","https://openalex.org/I4210164847","https://openalex.org/I4405259118"]},{"id":"https://openalex.org/I4210133725","display_name":"CNR de la R\u00e9sistance aux Antibiotiques","ror":"https://ror.org/044yd5h03","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210133725"]},{"id":"https://openalex.org/I4210134648","display_name":"H\u00f4pital Raymond-Poincar\u00e9","ror":"https://ror.org/03pef0w96","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I4210097159","https://openalex.org/I4210134648"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Didier Guillemot","raw_affiliation_strings":["AP-HP, Paris Saclay, Department of Public Health, Medical Information, Clinical research, Garches, France","INSERM, Universit\u00e9 Paris-Saclay, Universit\u00e9 de Versailles St-Quentin-en-Yvelines, Team Echappement aux Anti-infectieux et Pharmaco\u00e9pid\u00e9miologie U1018, CESP, Versailles, France","Institut Pasteur, Universit\u00e9 Paris Cit\u00e9, Epidemiology and Modelling of Bacterial Escape to Antimicrobials (EMEA), Paris, France","EMAE - Epid\u00e9miologie et mod\u00e9lisation de la r\u00e9sistance aux antimicrobiens - Epidemiology and modelling of bacterial escape to antimicrobials (25-28 rue du Docteur Roux, 75724 Paris Cedex 15 - France)","H\u00f4pital Raymond Poincar\u00e9 (Garches) [GHU AP-HP Universit\u00e9 Paris-Saclay] (104, boulevard Raymond-Poincar\u00e9 \u2013 92380 Garches - France)","CESP - Centre de recherche en \u00e9pid\u00e9miologie et sant\u00e9 des populations (16 avenue Paul Vaillant Couturier 94807 Villejuif Cedex, France - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AP-HP, Paris Saclay, Department of Public Health, Medical Information, Clinical research, Garches, France","institution_ids":["https://openalex.org/I4210097159"]},{"raw_affiliation_string":"INSERM, Universit\u00e9 Paris-Saclay, Universit\u00e9 de Versailles St-Quentin-en-Yvelines, Team Echappement aux Anti-infectieux et Pharmaco\u00e9pid\u00e9miologie U1018, CESP, Versailles, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I4210103698","https://openalex.org/I195731000","https://openalex.org/I277688954"]},{"raw_affiliation_string":"Institut Pasteur, Universit\u00e9 Paris Cit\u00e9, Epidemiology and Modelling of Bacterial Escape to Antimicrobials (EMEA), Paris, France","institution_ids":["https://openalex.org/I157536573","https://openalex.org/I204730241"]},{"raw_affiliation_string":"EMAE - Epid\u00e9miologie et mod\u00e9lisation de la r\u00e9sistance aux antimicrobiens - Epidemiology and modelling of bacterial escape to antimicrobials (25-28 rue du Docteur Roux, 75724 Paris Cedex 15 - France)","institution_ids":["https://openalex.org/I4210133725"]},{"raw_affiliation_string":"H\u00f4pital Raymond Poincar\u00e9 (Garches) [GHU AP-HP Universit\u00e9 Paris-Saclay] (104, boulevard Raymond-Poincar\u00e9 \u2013 92380 Garches - France)","institution_ids":["https://openalex.org/I4210134648","https://openalex.org/I277688954","https://openalex.org/I4210097159"]},{"raw_affiliation_string":"CESP - Centre de recherche en \u00e9pid\u00e9miologie et sant\u00e9 des populations (16 avenue Paul Vaillant Couturier 94807 Villejuif Cedex, France - France)","institution_ids":["https://openalex.org/I4210103698"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053329804","display_name":"Laura Temime","orcid":"https://orcid.org/0000-0002-8850-5403"},"institutions":[{"id":"https://openalex.org/I124158823","display_name":"Conservatoire National des Arts et M\u00e9tiers","ror":"https://ror.org/0175hh227","country_code":"FR","type":"education","lineage":["https://openalex.org/I124158823","https://openalex.org/I4210134562"]},{"id":"https://openalex.org/I1298580462","display_name":"Institut de Veille Sanitaire","ror":"https://ror.org/04q5j9b45","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I1298580462"]},{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I157536573"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Laura Temime","raw_affiliation_strings":["Institut Pasteur, Conservatoire National des Arts et M\u00e9tiers, Unit\u00e9 PACRI, Paris, France","Laboratoire Mod\u00e9lisation, Epid\u00e9miologie et Surveillance des Risques Sanitaires (MESuRS), Conservatoire National des Arts et M\u00e9tiers, Paris, France","MESuRS - Laboratoire Mod\u00e9lisation, \u00e9pid\u00e9miologie et surveillance des risques sanitaires (292 rue Saint-Martin F-75141 Paris C\u00e9dex 03 - France)","PACRI - Pasteur-Cnam Risques infectieux et \u00e9mergents (Paris - France)"],"raw_orcid":"https://orcid.org/0000-0002-8850-5403","affiliations":[{"raw_affiliation_string":"Institut Pasteur, Conservatoire National des Arts et M\u00e9tiers, Unit\u00e9 PACRI, Paris, France","institution_ids":["https://openalex.org/I124158823","https://openalex.org/I157536573"]},{"raw_affiliation_string":"Laboratoire Mod\u00e9lisation, Epid\u00e9miologie et Surveillance des Risques Sanitaires (MESuRS), Conservatoire National des Arts et M\u00e9tiers, Paris, France","institution_ids":["https://openalex.org/I124158823"]},{"raw_affiliation_string":"MESuRS - Laboratoire Mod\u00e9lisation, \u00e9pid\u00e9miologie et surveillance des risques sanitaires (292 rue Saint-Martin F-75141 Paris C\u00e9dex 03 - France)","institution_ids":["https://openalex.org/I1298580462"]},{"raw_affiliation_string":"PACRI - Pasteur-Cnam Risques infectieux et \u00e9mergents (Paris - France)","institution_ids":["https://openalex.org/I124158823"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5061270982","display_name":"Lulla Opatowski","orcid":"https://orcid.org/0000-0001-8348-700X"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I157536573"]},{"id":"https://openalex.org/I195731000","display_name":"Universit\u00e9 de Versailles Saint-Quentin-en-Yvelines","ror":"https://ror.org/03mkjjy25","country_code":"FR","type":"education","lineage":["https://openalex.org/I195731000","https://openalex.org/I277688954"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210103698","display_name":"Centre de recherche en Epid\u00e9miologie et Sant\u00e9 des Populations","ror":"https://ror.org/01ed4t417","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I195731000","https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I4210097159","https://openalex.org/I4210097159","https://openalex.org/I4210103698","https://openalex.org/I4210164847","https://openalex.org/I4405259118"]},{"id":"https://openalex.org/I4210133725","display_name":"CNR de la R\u00e9sistance aux Antibiotiques","ror":"https://ror.org/044yd5h03","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210133725"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Lulla Opatowski","raw_affiliation_strings":["INSERM, Universit\u00e9 Paris-Saclay, Universit\u00e9 de Versailles St-Quentin-en-Yvelines, Team Echappement aux Anti-infectieux et Pharmaco\u00e9pid\u00e9miologie U1018, CESP, Versailles, France","Institut Pasteur, Universit\u00e9 Paris Cit\u00e9, Epidemiology and Modelling of Bacterial Escape to Antimicrobials (EMEA), Paris, France","EMAE - Epid\u00e9miologie et mod\u00e9lisation de la r\u00e9sistance aux antimicrobiens - Epidemiology and modelling of bacterial escape to antimicrobials (25-28 rue du Docteur Roux, 75724 Paris Cedex 15 - France)","CESP - Centre de recherche en \u00e9pid\u00e9miologie et sant\u00e9 des populations (16 avenue Paul Vaillant Couturier 94807 Villejuif Cedex, France - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INSERM, Universit\u00e9 Paris-Saclay, Universit\u00e9 de Versailles St-Quentin-en-Yvelines, Team Echappement aux Anti-infectieux et Pharmaco\u00e9pid\u00e9miologie U1018, CESP, Versailles, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I4210103698","https://openalex.org/I195731000","https://openalex.org/I277688954"]},{"raw_affiliation_string":"Institut Pasteur, Universit\u00e9 Paris Cit\u00e9, Epidemiology and Modelling of Bacterial Escape to Antimicrobials (EMEA), Paris, France","institution_ids":["https://openalex.org/I157536573","https://openalex.org/I204730241"]},{"raw_affiliation_string":"EMAE - Epid\u00e9miologie et mod\u00e9lisation de la r\u00e9sistance aux antimicrobiens - Epidemiology and modelling of bacterial escape to antimicrobials (25-28 rue du Docteur Roux, 75724 Paris Cedex 15 - France)","institution_ids":["https://openalex.org/I4210133725"]},{"raw_affiliation_string":"CESP - Centre de recherche en \u00e9pid\u00e9miologie et sant\u00e9 des populations (16 avenue Paul Vaillant Couturier 94807 Villejuif Cedex, France - France)","institution_ids":["https://openalex.org/I4210103698"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5060536855"],"corresponding_institution_ids":["https://openalex.org/I124158823","https://openalex.org/I1298580462","https://openalex.org/I154526488","https://openalex.org/I157536573","https://openalex.org/I195731000","https://openalex.org/I204730241","https://openalex.org/I277688954","https://openalex.org/I4210103698","https://openalex.org/I4210133725"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":1.585,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.82263108,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":98},"biblio":{"volume":"20","issue":"6","first_page":"e1012227","last_page":"e1012227"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10064","display_name":"Complex Network Analysis Techniques","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/3109","display_name":"Statistical and Nonlinear Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10064","display_name":"Complex Network Analysis Techniques","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/3109","display_name":"Statistical and Nonlinear Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11500","display_name":"Evacuation and Crowd Dynamics","score":0.9902999997138977,"subfield":{"id":"https://openalex.org/subfields/2212","display_name":"Ocean Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5655710101127625},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4838194251060486},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.37450718879699707}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5655710101127625},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4838194251060486},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.37450718879699707}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008134","descriptor_name":"Long-Term Care","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008134","descriptor_name":"Long-Term Care","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008134","descriptor_name":"Long-Term Care","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008134","descriptor_name":"Long-Term Care","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016358","descriptor_name":"Contact Tracing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D016358","descriptor_name":"Contact Tracing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D016358","descriptor_name":"Contact Tracing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D016358","descriptor_name":"Contact Tracing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D016358","descriptor_name":"Contact Tracing","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":true},{"descriptor_ui":"D016358","descriptor_name":"Contact Tracing","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":true},{"descriptor_ui":"D016358","descriptor_name":"Contact Tracing","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":true},{"descriptor_ui":"D016358","descriptor_name":"Contact Tracing","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1371/journal.pcbi.1012227","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1012227","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1012227&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:38870216","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38870216","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:HAL:hal-04626601v1","is_oa":true,"landing_page_url":"https://hal.science/hal-04626601","pdf_url":"https://hal.science/hal-04626601/file/journal.pcbi.1012227.pdf","source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 1553-734X","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:11207132","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11207132","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11207132/pdf/pcbi.1012227.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"},{"id":"pmh:oai:RePEc:plo:pcbi00:1012227","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1012227","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:2d272bed4d764bb391395391adefd9ee","is_oa":false,"landing_page_url":"https://doaj.org/article/2d272bed4d764bb391395391adefd9ee","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 20, Iss 6, p e1012227 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1012227","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1012227","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1012227&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.7599999904632568,"id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G656583883","display_name":null,"funder_award_id":"ANR-10-LABX-62-IBEID","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G665571431","display_name":null,"funder_award_id":"SPHINX-17-CE36-0008-01","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G7240651115","display_name":null,"funder_award_id":"ANR-10","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G8670608220","display_name":null,"funder_award_id":"ANR-10-LABX-62","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320338463","display_name":"CHIST-ERA","ror":"https://ror.org/00rbzpz17"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4399601913.pdf","grobid_xml":"https://content.openalex.org/works/W4399601913.grobid-xml"},"referenced_works_count":57,"referenced_works":["https://openalex.org/W229097380","https://openalex.org/W1619010075","https://openalex.org/W1790187478","https://openalex.org/W1937334562","https://openalex.org/W1975328099","https://openalex.org/W2026552514","https://openalex.org/W2035955342","https://openalex.org/W2044773964","https://openalex.org/W2059763605","https://openalex.org/W2068404042","https://openalex.org/W2071802245","https://openalex.org/W2073627497","https://openalex.org/W2075156939","https://openalex.org/W2083485334","https://openalex.org/W2094128465","https://openalex.org/W2109341971","https://openalex.org/W2112090702","https://openalex.org/W2126825186","https://openalex.org/W2129740656","https://openalex.org/W2131499531","https://openalex.org/W2132022337","https://openalex.org/W2149769615","https://openalex.org/W2154416797","https://openalex.org/W2158939861","https://openalex.org/W2159301256","https://openalex.org/W2159891898","https://openalex.org/W2163966557","https://openalex.org/W2166660524","https://openalex.org/W2169760521","https://openalex.org/W2465617759","https://openalex.org/W2494000918","https://openalex.org/W2582743722","https://openalex.org/W2786410925","https://openalex.org/W2959121429","https://openalex.org/W3037819556","https://openalex.org/W3038787377","https://openalex.org/W3043948261","https://openalex.org/W3100351146","https://openalex.org/W3101906233","https://openalex.org/W3105289605","https://openalex.org/W3105603957","https://openalex.org/W3123284134","https://openalex.org/W3125676075","https://openalex.org/W3129541973","https://openalex.org/W3175110359","https://openalex.org/W3185494345","https://openalex.org/W3194714732","https://openalex.org/W3217410075","https://openalex.org/W4214484419","https://openalex.org/W4220778903","https://openalex.org/W4223911497","https://openalex.org/W4225344291","https://openalex.org/W4225875189","https://openalex.org/W4252394414","https://openalex.org/W4280490401","https://openalex.org/W4302331569","https://openalex.org/W4360825567"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2051487156","https://openalex.org/W2073681303","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052"],"abstract_inverted_index":{"Small":[0],"populations":[1],"(e.g.,":[2],"hospitals,":[3],"schools":[4],"or":[5],"workplaces)":[6],"are":[7,31,35,126],"characterised":[8],"by":[9,118,195],"high":[10],"contact":[11,21,60,93,209,257,279],"heterogeneity":[12,29],"and":[13,30,42,66,95,107,154,168,172,203,207,259,275],"stochasticity":[14],"affecting":[15],"pathogen":[16],"transmission":[17],"dynamics.":[18],"Empirical":[19],"individual":[20,59],"data":[22,61,72,116,162],"provide":[23],"unprecedented":[24],"information":[25,96],"to":[26,52,147,181,239,253,277,281,288],"characterize":[27],"such":[28],"increasingly":[32],"available,":[33],"but":[34],"usually":[36],"collected":[37,74,163],"over":[38],"a":[39,76,229],"limited":[40,285],"period,":[41],"can":[43],"suffer":[44],"from":[45,58,86,263],"observation":[46,145],"bias.":[47],"We":[48,157],"propose":[49,250],"an":[50,144,251],"algorithm":[51,82,160,176,226,234],"stochastically":[53],"reconstruct":[54,260],"realistic":[55,230,255],"temporal":[56,214,231,256],"networks":[57,85,190,243,258,280],"in":[62,75,105,128,135],"healthcare":[63],"settings":[64],"(HCS)":[65],"test":[67],"this":[68],"approach":[69,252],"using":[70,90,161,267,284],"real":[71],"previously":[73],"long-term":[77],"care":[78],"facility":[79],"(LTCF).":[80],"Our":[81],"generates":[83],"full":[84,241],"recorded":[87,134],"close-proximity":[88],"interactions,":[89],"hourly":[91,205],"inter-individual":[92],"rates":[94],"on":[97],"individuals'":[98],"wards,":[99],"the":[100,108,129,136,152,165,170,193,204,212,245],"categories":[101],"of":[102,110],"staff":[103,206],"involved":[104],"contacts,":[106],"frequency":[109],"recurring":[111],"contacts.":[112],"It":[113],"also":[114,217],"provides":[115],"augmentation":[117],"reconstructing":[119],"contacts":[120,133,238,262],"for":[121,244],"days":[122],"when":[123],"some":[124],"individuals":[125],"present":[127],"HCS":[130,283],"without":[131],"having":[132],"empirical":[137,171,286],"data.":[138],"Recording":[139],"bias":[140],"is":[141],"formalized":[142],"through":[143],"model,":[146],"allow":[148],"direct":[149],"comparison":[150],"between":[151],"augmented":[153],"observed":[155,213],"networks.":[156,174,270],"validate":[158],"our":[159,225],"during":[164],"i-Bird":[166],"study,":[167],"compare":[169],"reconstructed":[173,189,242],"The":[175,188,233],"was":[177,216],"substantially":[178],"more":[179],"accurate":[180],"reproduce":[182],"network":[183],"characteristics":[184],"than":[185],"random":[186],"graphs.":[187],"reproduced":[191,219],"well":[192,218],"assortativity":[194],"ward":[196],"(first-third":[197],"quartiles":[198],"observed:":[199],"0.54-0.64;":[200],"synthetic:":[201],"0.52-0.64)":[202],"patient":[208],"patterns.":[210],"Importantly,":[211],"correlation":[215],"(0.39-0.50":[220],"vs":[221],"0.37-0.44),":[222],"indicating":[223],"that":[224],"could":[227,272],"recreate":[228],"structure.":[232],"consistently":[235],"recreated":[236],"unobserved":[237,261],"generate":[240,254,278],"LTCF.":[246],"To":[247],"conclude,":[248],"we":[249],"summary":[264],"statistics":[265],"computed":[266],"individual-level":[268],"interaction":[269],"This":[271],"be":[273],"applied":[274],"extended":[276],"other":[282],"data,":[287],"subsequently":[289],"inform":[290],"individual-based":[291],"epidemic":[292],"models.":[293]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":4}],"updated_date":"2026-05-07T13:39:58.223016","created_date":"2025-10-10T00:00:00"}
