{"id":"https://openalex.org/W4399424878","doi":"https://doi.org/10.1371/journal.pcbi.1012129","title":"Modeling dynamics of acute HIV infection incorporating density-dependent cell death and multiplicity of infection","display_name":"Modeling dynamics of acute HIV infection incorporating density-dependent cell death and multiplicity of infection","publication_year":2024,"publication_date":"2024-06-07","ids":{"openalex":"https://openalex.org/W4399424878","doi":"https://doi.org/10.1371/journal.pcbi.1012129","pmid":"https://pubmed.ncbi.nlm.nih.gov/38848426"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1012129","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1012129","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1012129&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1012129&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5002720101","display_name":"Ellie Mainou","orcid":"https://orcid.org/0000-0003-4549-1336"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]},{"id":"https://openalex.org/I1338678786","display_name":"Center for Disease Dynamics, Economics & Policy","ror":"https://ror.org/01skhd946","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1338678786"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ellie Mainou","raw_affiliation_strings":["Department of Biology, Center for Infectious Disease Dynamics, The Pennsylvania State University, University Park, Pennsylvania, United States of America"],"raw_orcid":"https://orcid.org/0000-0003-4549-1336","affiliations":[{"raw_affiliation_string":"Department of Biology, Center for Infectious Disease Dynamics, The Pennsylvania State University, University Park, Pennsylvania, United States of America","institution_ids":["https://openalex.org/I1338678786","https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033826368","display_name":"Ruy M. Ribeiro","orcid":"https://orcid.org/0000-0002-3988-8241"},"institutions":[{"id":"https://openalex.org/I1343871089","display_name":"Los Alamos National Laboratory","ror":"https://ror.org/01e41cf67","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I1343871089","https://openalex.org/I198811213","https://openalex.org/I4210120050"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ruy M. Ribeiro","raw_affiliation_strings":["Theoretical Biology and Biophysics, Los Alamos National Laboratory, Los Alamos, New Mexico, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Theoretical Biology and Biophysics, Los Alamos National Laboratory, Los Alamos, New Mexico, United States of America","institution_ids":["https://openalex.org/I1343871089"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102778352","display_name":"Jessica M. Conway","orcid":"https://orcid.org/0000-0003-1474-4230"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]},{"id":"https://openalex.org/I1338678786","display_name":"Center for Disease Dynamics, Economics & Policy","ror":"https://ror.org/01skhd946","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1338678786"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jessica M. Conway","raw_affiliation_strings":["Department of Mathematics, Center for Infectious Disease Dynamics, The Pennsylvania State University, University Park, Pennsylvania, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics, Center for Infectious Disease Dynamics, The Pennsylvania State University, University Park, Pennsylvania, United States of America","institution_ids":["https://openalex.org/I1338678786","https://openalex.org/I130769515"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5002720101","https://openalex.org/A5033826368","https://openalex.org/A5102778352"],"corresponding_institution_ids":["https://openalex.org/I130769515","https://openalex.org/I1338678786","https://openalex.org/I1343871089"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":1.8569,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.84737175,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"20","issue":"6","first_page":"e1012129","last_page":"e1012129"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10112","display_name":"HIV Research and Treatment","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10112","display_name":"HIV Research and Treatment","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10082","display_name":"HIV/AIDS Research and Interventions","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11860","display_name":"HIV, Drug Use, Sexual Risk","score":0.9628000259399414,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/akaike-information-criterion","display_name":"Akaike information criterion","score":0.7745970487594604},{"id":"https://openalex.org/keywords/multiplicity-of-infection","display_name":"Multiplicity of infection","score":0.6052448153495789},{"id":"https://openalex.org/keywords/dynamics","display_name":"Dynamics (music)","score":0.5643399953842163},{"id":"https://openalex.org/keywords/human-immunodeficiency-virus","display_name":"Human immunodeficiency virus (HIV)","score":0.5285336375236511},{"id":"https://openalex.org/keywords/viral-infection","display_name":"Viral infection","score":0.46540290117263794},{"id":"https://openalex.org/keywords/viral-load","display_name":"Viral load","score":0.4622623026371002},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4548793435096741},{"id":"https://openalex.org/keywords/viral-pathogenesis","display_name":"Viral pathogenesis","score":0.43425253033638},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.4114105999469757},{"id":"https://openalex.org/keywords/statistical-physics","display_name":"Statistical physics","score":0.3913082778453827},{"id":"https://openalex.org/keywords/viral-replication","display_name":"Viral replication","score":0.34614408016204834},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.34021949768066406},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.2927943468093872},{"id":"https://openalex.org/keywords/virus","display_name":"Virus","score":0.27449116110801697},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.2587764859199524},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.08561268448829651}],"concepts":[{"id":"https://openalex.org/C126674687","wikidata":"https://www.wikidata.org/wiki/Q1662573","display_name":"Akaike information criterion","level":2,"score":0.7745970487594604},{"id":"https://openalex.org/C203233990","wikidata":"https://www.wikidata.org/wiki/Q1511135","display_name":"Multiplicity of infection","level":3,"score":0.6052448153495789},{"id":"https://openalex.org/C145912823","wikidata":"https://www.wikidata.org/wiki/Q113558","display_name":"Dynamics (music)","level":2,"score":0.5643399953842163},{"id":"https://openalex.org/C3013748606","wikidata":"https://www.wikidata.org/wiki/Q15787","display_name":"Human immunodeficiency virus (HIV)","level":2,"score":0.5285336375236511},{"id":"https://openalex.org/C2994541485","wikidata":"https://www.wikidata.org/wiki/Q1928978","display_name":"Viral infection","level":3,"score":0.46540290117263794},{"id":"https://openalex.org/C142462285","wikidata":"https://www.wikidata.org/wiki/Q2528140","display_name":"Viral load","level":3,"score":0.4622623026371002},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4548793435096741},{"id":"https://openalex.org/C140933497","wikidata":"https://www.wikidata.org/wiki/Q7933606","display_name":"Viral pathogenesis","level":4,"score":0.43425253033638},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.4114105999469757},{"id":"https://openalex.org/C121864883","wikidata":"https://www.wikidata.org/wiki/Q677916","display_name":"Statistical physics","level":1,"score":0.3913082778453827},{"id":"https://openalex.org/C140704245","wikidata":"https://www.wikidata.org/wiki/Q3933202","display_name":"Viral replication","level":3,"score":0.34614408016204834},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.34021949768066406},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2927943468093872},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.27449116110801697},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.2587764859199524},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.08561268448829651},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000208","descriptor_name":"Acute Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000208","descriptor_name":"Acute Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000208","descriptor_name":"Acute Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000208","descriptor_name":"Acute Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000328","descriptor_name":"Adult","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000328","descriptor_name":"Adult","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000328","descriptor_name":"Adult","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000328","descriptor_name":"Adult","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000503","qualifier_name":"physiopathology","is_major_topic":true},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000503","qualifier_name":"physiopathology","is_major_topic":true},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000503","qualifier_name":"physiopathology","is_major_topic":true},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000503","qualifier_name":"physiopathology","is_major_topic":true},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":true},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":true},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":true},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":true},{"descriptor_ui":"D016923","descriptor_name":"Cell Death","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true},{"descriptor_ui":"D016923","descriptor_name":"Cell Death","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true},{"descriptor_ui":"D016923","descriptor_name":"Cell Death","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true},{"descriptor_ui":"D016923","descriptor_name":"Cell Death","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019562","descriptor_name":"Viral Load","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019562","descriptor_name":"Viral Load","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019562","descriptor_name":"Viral Load","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019562","descriptor_name":"Viral Load","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1371/journal.pcbi.1012129","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1012129","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1012129&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:38848426","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38848426","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11189221","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11189221","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11189221/pdf/pcbi.1012129.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"},{"id":"pmh:oai:RePEc:plo:pcbi00:1012129","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1012129","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:b5657aba2cdd4b328e6d5513905b0283","is_oa":false,"landing_page_url":"https://doaj.org/article/b5657aba2cdd4b328e6d5513905b0283","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 20, Iss 6, p e1012129 (2024)","raw_type":"article"},{"id":"pmh:oai:osti.gov:2472584","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/2472584","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1012129","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1012129","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1012129&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.8500000238418579}],"awards":[{"id":"https://openalex.org/G1957117371","display_name":null,"funder_award_id":"R01-AI028433","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2885523781","display_name":null,"funder_award_id":"R21-AI143443-01A1","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4081147937","display_name":null,"funder_award_id":"R01-OD011095","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5484597190","display_name":"HIV Post-Treatment: Stochastic Modeling Insights on Rebound and Control","funder_award_id":"1714654","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5842988033","display_name":null,"funder_award_id":"AI028433","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5850682332","display_name":null,"funder_award_id":"W81XWH","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6605557409","display_name":null,"funder_award_id":"AI152703","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6683013672","display_name":null,"funder_award_id":"R01-AI152703","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7665571520","display_name":null,"funder_award_id":"DMS-1714654","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8093122957","display_name":null,"funder_award_id":"W81XWH-18-2-0040","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8920840650","display_name":null,"funder_award_id":"OD011095","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320338478","display_name":"U.S. Army Medical Research Acquisition Activity","ror":null}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4399424878.pdf"},"referenced_works_count":71,"referenced_works":["https://openalex.org/W284066605","https://openalex.org/W1596727920","https://openalex.org/W1598813349","https://openalex.org/W1655510925","https://openalex.org/W1814500939","https://openalex.org/W1915828783","https://openalex.org/W1966522287","https://openalex.org/W1966771136","https://openalex.org/W1974566789","https://openalex.org/W1980223851","https://openalex.org/W1980441640","https://openalex.org/W2004862733","https://openalex.org/W2005816484","https://openalex.org/W2007537183","https://openalex.org/W2008043760","https://openalex.org/W2013602955","https://openalex.org/W2022098233","https://openalex.org/W2022101730","https://openalex.org/W2026059861","https://openalex.org/W2029997107","https://openalex.org/W2039370209","https://openalex.org/W2045550107","https://openalex.org/W2048499136","https://openalex.org/W2048560524","https://openalex.org/W2051063688","https://openalex.org/W2051269276","https://openalex.org/W2060534902","https://openalex.org/W2060735144","https://openalex.org/W2061536824","https://openalex.org/W2061657962","https://openalex.org/W2062152384","https://openalex.org/W2065190721","https://openalex.org/W2071794013","https://openalex.org/W2078358826","https://openalex.org/W2080647790","https://openalex.org/W2081772552","https://openalex.org/W2085722235","https://openalex.org/W2093259226","https://openalex.org/W2093458589","https://openalex.org/W2112391961","https://openalex.org/W2114497207","https://openalex.org/W2114705914","https://openalex.org/W2120915945","https://openalex.org/W2122723212","https://openalex.org/W2122906941","https://openalex.org/W2123528481","https://openalex.org/W2129114331","https://openalex.org/W2129541947","https://openalex.org/W2137927367","https://openalex.org/W2139338553","https://openalex.org/W2142509557","https://openalex.org/W2143148297","https://openalex.org/W2151303894","https://openalex.org/W2169096262","https://openalex.org/W2231521459","https://openalex.org/W2323339614","https://openalex.org/W2402980652","https://openalex.org/W2409723445","https://openalex.org/W2412450517","https://openalex.org/W2412909330","https://openalex.org/W2478738321","https://openalex.org/W2803977340","https://openalex.org/W2897165284","https://openalex.org/W2899916926","https://openalex.org/W2905349504","https://openalex.org/W2959231597","https://openalex.org/W2997998716","https://openalex.org/W3040803474","https://openalex.org/W3088850278","https://openalex.org/W3174276657","https://openalex.org/W4390701788"],"related_works":["https://openalex.org/W2082311896","https://openalex.org/W3029188323","https://openalex.org/W3190981607","https://openalex.org/W1963987860","https://openalex.org/W2991407587","https://openalex.org/W1999614538","https://openalex.org/W1977609475","https://openalex.org/W2081976519","https://openalex.org/W1574387345","https://openalex.org/W4308810149"],"abstract_inverted_index":{"Understanding":[0],"the":[1,12,41,55,85,96,105,157,162,168,183,190,197,204,252],"dynamics":[2,29,34,108,138,184,193,242],"of":[3,15,23,49,70,124,161,174,182,255],"acute":[4,36,136],"HIV":[5,24,32,50,65,144,148],"infection":[6,37,71,137],"can":[7],"offer":[8],"valuable":[9],"insights":[10],"into":[11],"early":[13,146],"stages":[14],"viral":[16,28,33,80,107,192,213,241],"behavior,":[17],"potentially":[18],"helping":[19],"uncover":[20],"various":[21],"aspects":[22,48],"pathogenesis.":[25],"The":[26],"standard":[27,56,86,106,191],"model":[30,42,113,119,130,194,220,259],"explains":[31],"during":[35],"reasonably":[38],"well.":[39],"However,":[40],"makes":[43],"simplifying":[44,95],"assumptions,":[45],"neglecting":[46],"some":[47],"infection.":[51],"For":[52,187],"instance,":[53],"in":[54,77,139,239],"model,":[57,87,109],"target":[58],"cells":[59,126],"are":[60,215],"infected":[61,91,125],"by":[62,166,203,218,232,246],"a":[63,118,129,219,226,247,257],"single":[64,248],"virion.":[66],"Yet,":[67],"cellular":[68,115,223],"multiplicity":[69],"(MOI)":[72],"may":[73,195],"have":[74],"considerable":[75],"effects":[76],"pathogenesis":[78],"and":[79,127,133],"evolution.":[81],"Further,":[82],"when":[83],"using":[84,225],"we":[88,101,210],"take":[89],"constant":[90],"cell":[92],"death":[93,122],"rates,":[94],"dynamic":[97],"immune":[98],"responses.":[99],"Here,":[100],"use":[102],"four":[103],"models-1)":[104],"2)":[110],"an":[111],"alternate":[112],"incorporating":[114],"MOI,":[116,224],"3)":[117],"assuming":[120],"density-dependent":[121],"rate":[123],"4)":[128],"combining":[131],"(2)":[132],"(3)-to":[134],"investigate":[135],"43":[140],"people":[141],"living":[142],"with":[143],"very":[145],"after":[147],"exposure.":[149],"We":[150],"find":[151,211],"that":[152,212,237],"all":[153],"models":[154,164,178],"qualitatively":[155],"describe":[156,179],"data,":[158],"but":[159],"none":[160],"tested":[163],"is":[165],"itself":[167],"best":[169],"to":[170],"capture":[171],"different":[172,177],"kinds":[173],"heterogeneity.":[175],"Instead,":[176],"differing":[180],"features":[181],"more":[185],"accurately.":[186],"example,":[188],"while":[189],"be":[196,244,261],"most":[198],"parsimonious":[199],"across":[200],"study":[201],"participants":[202],"corrected":[205],"Akaike":[206],"Information":[207],"Criterion":[208],"(AICc),":[209],"peaks":[214],"better":[216],"explained":[217],"allowing":[221],"for":[222],"linear":[227],"regression":[228],"analysis":[229],"as":[230],"analyzed":[231],"R2.":[233],"These":[234],"results":[235],"suggest":[236],"heterogeneity":[238],"within-host":[240],"cannot":[243],"captured":[245],"model.":[249],"Depending":[250],"on":[251],"specific":[253],"aspect":[254],"interest,":[256],"corresponding":[258],"should":[260],"employed.":[262]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":2}],"updated_date":"2026-06-07T08:38:57.713557","created_date":"2025-10-10T00:00:00"}
