{"id":"https://openalex.org/W4408386721","doi":"https://doi.org/10.1371/journal.pcbi.1012109","title":"RBC-GEM: A genome-scale metabolic model for systems biology of the human red blood cell","display_name":"RBC-GEM: A genome-scale metabolic model for systems biology of the human red blood cell","publication_year":2025,"publication_date":"2025-03-12","ids":{"openalex":"https://openalex.org/W4408386721","doi":"https://doi.org/10.1371/journal.pcbi.1012109","pmid":"https://pubmed.ncbi.nlm.nih.gov/40072998"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1012109","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1012109","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1012109&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1012109&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046266224","display_name":"Zachary B. Haiman","orcid":"https://orcid.org/0000-0001-6175-5050"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zachary B. Haiman","raw_affiliation_strings":["Department of Bioengineering, University of California San Diego, La Jolla, California, United States of America"],"raw_orcid":"https://orcid.org/0000-0001-6175-5050","affiliations":[{"raw_affiliation_string":"Department of Bioengineering, University of California San Diego, La Jolla, California, United States of America","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031546101","display_name":"Alicia Key","orcid":"https://orcid.org/0000-0002-8787-8144"},"institutions":[{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alicia Key","raw_affiliation_strings":["Department of Biochemistry and Molecular Genetics, University of Colorado Anschutz Medical Campus, Aurora, Colorado, USA"],"raw_orcid":"https://orcid.org/0000-0002-8787-8144","affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Genetics, University of Colorado Anschutz Medical Campus, Aurora, Colorado, USA","institution_ids":["https://openalex.org/I51713134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045175167","display_name":"Angelo D\u2019Alessandro","orcid":"https://orcid.org/0000-0002-2258-6490"},"institutions":[{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Angelo D\u2019Alessandro","raw_affiliation_strings":["Department of Biochemistry and Molecular Genetics, University of Colorado Anschutz Medical Campus, Aurora, Colorado, USA"],"raw_orcid":"https://orcid.org/0000-0002-2258-6490","affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Genetics, University of Colorado Anschutz Medical Campus, Aurora, Colorado, USA","institution_ids":["https://openalex.org/I51713134"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5051097609","display_name":"Bernhard \u00d8. Palsson","orcid":"https://orcid.org/0000-0003-2357-6785"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Bernhard O. Palsson","raw_affiliation_strings":["Bioinformatics and Systems Biology Program, University of California, La Jolla, San Diego, California, United States of America","Department of Bioengineering, University of California San Diego, La Jolla, California, United States of America","Department of Pediatrics, University of California San Diego, La Jolla, California, United States of America"],"raw_orcid":"https://orcid.org/0000-0003-2357-6785","affiliations":[{"raw_affiliation_string":"Bioinformatics and Systems Biology Program, University of California, La Jolla, San Diego, California, United States of America","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Department of Bioengineering, University of California San Diego, La Jolla, California, United States of America","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Department of Pediatrics, University of California San Diego, La Jolla, California, United States of America","institution_ids":["https://openalex.org/I36258959"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5051097609"],"corresponding_institution_ids":["https://openalex.org/I36258959"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":3.1335,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.91594091,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"21","issue":"3","first_page":"e1012109","last_page":"e1012109"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9872999787330627,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.6884033679962158},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6367346048355103},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.610610842704773},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.5812339186668396},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.5676805973052979},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5391768217086792},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.5153421759605408},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4423781931400299},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.342841774225235},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.2683336138725281},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.20022180676460266},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.17207494378089905},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.1043243408203125}],"concepts":[{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.6884033679962158},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6367346048355103},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.610610842704773},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.5812339186668396},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.5676805973052979},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5391768217086792},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.5153421759605408},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4423781931400299},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.342841774225235},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2683336138725281},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.20022180676460266},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17207494378089905},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.1043243408203125},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D004912","descriptor_name":"Erythrocytes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D004912","descriptor_name":"Erythrocytes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D004912","descriptor_name":"Erythrocytes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D004912","descriptor_name":"Erythrocytes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D004912","descriptor_name":"Erythrocytes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1371/journal.pcbi.1012109","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1012109","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1012109&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:11925312","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11925312","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"},{"id":"pmid:40072998","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40072998","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:escholarship.org:ark:/13030/qt2v85d5qj","is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/2v85d5qj","pdf_url":"https://escholarship.org/content/qt2v85d5qj/qt2v85d5qj.pdf","source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLOS Computational Biology, vol 21, iss 3","raw_type":"article"},{"id":"pmh:ark:/13030/qt2v85d5qj","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:doaj.org/article:68a5b34fd7914e7cac117c98e1f7d1ac","is_oa":true,"landing_page_url":"https://doaj.org/article/68a5b34fd7914e7cac117c98e1f7d1ac","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 21, Iss 3, p e1012109 (2025)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1012109","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1012109","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1012109&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1796637411","display_name":null,"funder_award_id":"R01HL146442","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G2683826487","display_name":null,"funder_award_id":"R01HL148151","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G4451713954","display_name":null,"funder_award_id":"R01 HL149714","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G526168587","display_name":null,"funder_award_id":"R01HL146442, R01HL149714, and R01HL148151","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G5607442655","display_name":null,"funder_award_id":"and R01HL148151","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"}],"funders":[{"id":"https://openalex.org/F4320332603","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48"},{"id":"https://openalex.org/F4320337338","display_name":"National Heart, Lung, and Blood Institute","ror":"https://ror.org/012pb6c26"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4408386721.pdf"},"referenced_works_count":299,"referenced_works":["https://openalex.org/W3650204","https://openalex.org/W28361750","https://openalex.org/W112651511","https://openalex.org/W139815902","https://openalex.org/W147939766","https://openalex.org/W196774176","https://openalex.org/W1199794948","https://openalex.org/W1484078749","https://openalex.org/W1487088539","https://openalex.org/W1509142077","https://openalex.org/W1512735145","https://openalex.org/W1528907671","https://openalex.org/W1545620758","https://openalex.org/W1549421076","https://openalex.org/W1561304603","https://openalex.org/W1563406908","https://openalex.org/W1655162787","https://openalex.org/W1665355332","https://openalex.org/W1805611945","https://openalex.org/W1860450641","https://openalex.org/W1925289396","https://openalex.org/W1941224002","https://openalex.org/W1966533136","https://openalex.org/W1967431643","https://openalex.org/W1970562141","https://openalex.org/W1970843729","https://openalex.org/W1971057631","https://openalex.org/W1971284410","https://openalex.org/W1974176052","https://openalex.org/W1974741013","https://openalex.org/W1978408474","https://openalex.org/W1980078464","https://openalex.org/W1983046479","https://openalex.org/W1984376924","https://openalex.org/W1984521724","https://openalex.org/W1985125972","https://openalex.org/W1985261553","https://openalex.org/W1992989487","https://openalex.org/W1994125606","https://openalex.org/W1995534668","https://openalex.org/W1999381547","https://openalex.org/W1999382188","https://openalex.org/W2001758733","https://openalex.org/W2002180552","https://openalex.org/W2002509725","https://openalex.org/W2009379373","https://openalex.org/W2009543343","https://openalex.org/W2019852916","https://openalex.org/W2020561965","https://openalex.org/W2021479241","https://openalex.org/W2022066534","https://openalex.org/W2023715313","https://openalex.org/W2023926908","https://openalex.org/W2024968752","https://openalex.org/W2026422802","https://openalex.org/W2027497729","https://openalex.org/W2027666746","https://openalex.org/W2027947566","https://openalex.org/W2028231868","https://openalex.org/W2029109058","https://openalex.org/W2029110613","https://openalex.org/W2031070745","https://openalex.org/W2032485563","https://openalex.org/W2034230119","https://openalex.org/W2035800570","https://openalex.org/W2037372250","https://openalex.org/W2040349912","https://openalex.org/W2041024806","https://openalex.org/W2041639681","https://openalex.org/W2041908185","https://openalex.org/W2042619626","https://openalex.org/W2043175458","https://openalex.org/W2043569742","https://openalex.org/W2045982584","https://openalex.org/W2048465561","https://openalex.org/W2049237667","https://openalex.org/W2050043857","https://openalex.org/W2051281157","https://openalex.org/W2053300778","https://openalex.org/W2054080005","https://openalex.org/W2054924643","https://openalex.org/W2056836528","https://openalex.org/W2058112588","https://openalex.org/W2058145575","https://openalex.org/W2061336106","https://openalex.org/W2061500389","https://openalex.org/W2063514654","https://openalex.org/W2065411032","https://openalex.org/W2066562477","https://openalex.org/W2066724054","https://openalex.org/W2066815783","https://openalex.org/W2067340748","https://openalex.org/W2069278348","https://openalex.org/W2069774708","https://openalex.org/W2070802117","https://openalex.org/W2071985557","https://openalex.org/W2072784013","https://openalex.org/W2074197605","https://openalex.org/W2074783201","https://openalex.org/W2075112531","https://openalex.org/W2076262841","https://openalex.org/W2077087256","https://openalex.org/W2079783784","https://openalex.org/W2079836392","https://openalex.org/W2080572452","https://openalex.org/W2081011520","https://openalex.org/W2082195536","https://openalex.org/W2083116330","https://openalex.org/W2085993965","https://openalex.org/W2090321557","https://openalex.org/W2092292187","https://openalex.org/W2095203090","https://openalex.org/W2097654356","https://openalex.org/W2098143583","https://openalex.org/W2102170011","https://openalex.org/W2104108767","https://openalex.org/W2106197589","https://openalex.org/W2106401347","https://openalex.org/W2108878824","https://openalex.org/W2111218516","https://openalex.org/W2114034054","https://openalex.org/W2116723965","https://openalex.org/W2116911856","https://openalex.org/W2122732537","https://openalex.org/W2132774644","https://openalex.org/W2134566930","https://openalex.org/W2139432714","https://openalex.org/W2139683422","https://openalex.org/W2146859060","https://openalex.org/W2147144307","https://openalex.org/W2149369520","https://openalex.org/W2154264920","https://openalex.org/W2154717205","https://openalex.org/W2158436681","https://openalex.org/W2161289889","https://openalex.org/W2162300885","https://openalex.org/W2166401166","https://openalex.org/W2166614941","https://openalex.org/W2168284706","https://openalex.org/W2168303916","https://openalex.org/W2183385055","https://openalex.org/W2202347610","https://openalex.org/W2223929705","https://openalex.org/W2252766049","https://openalex.org/W2260642016","https://openalex.org/W2264881665","https://openalex.org/W2270240153","https://openalex.org/W2302501749","https://openalex.org/W2304435356","https://openalex.org/W2332944707","https://openalex.org/W2340179598","https://openalex.org/W2417915247","https://openalex.org/W2418772587","https://openalex.org/W2461866271","https://openalex.org/W2466448487","https://openalex.org/W2504097392","https://openalex.org/W2507939969","https://openalex.org/W2510166876","https://openalex.org/W2523108916","https://openalex.org/W2529155476","https://openalex.org/W2536066790","https://openalex.org/W2548952244","https://openalex.org/W2586055467","https://openalex.org/W2604657987","https://openalex.org/W2725459407","https://openalex.org/W2731991504","https://openalex.org/W2747965822","https://openalex.org/W2755166087","https://openalex.org/W2763014033","https://openalex.org/W2765497308","https://openalex.org/W2765876921","https://openalex.org/W2766399257","https://openalex.org/W2771155712","https://openalex.org/W2773674163","https://openalex.org/W2774679185","https://openalex.org/W2781697521","https://openalex.org/W2785313357","https://openalex.org/W2789128799","https://openalex.org/W2807489532","https://openalex.org/W2833943491","https://openalex.org/W2883913235","https://openalex.org/W2885674637","https://openalex.org/W2888695779","https://openalex.org/W2889810336","https://openalex.org/W2894355505","https://openalex.org/W2894791754","https://openalex.org/W2897068051","https://openalex.org/W2897670153","https://openalex.org/W2898376167","https://openalex.org/W2899985143","https://openalex.org/W2903357856","https://openalex.org/W2913180890","https://openalex.org/W2964522952","https://openalex.org/W2965789264","https://openalex.org/W2969911993","https://openalex.org/W2971139914","https://openalex.org/W2972561900","https://openalex.org/W2972927281","https://openalex.org/W2977870980","https://openalex.org/W2981666196","https://openalex.org/W2987028578","https://openalex.org/W2988361147","https://openalex.org/W2990346599","https://openalex.org/W3002670987","https://openalex.org/W3003333413","https://openalex.org/W3004942713","https://openalex.org/W3007643696","https://openalex.org/W3009592638","https://openalex.org/W3010629926","https://openalex.org/W3013554928","https://openalex.org/W3015129246","https://openalex.org/W3015536202","https://openalex.org/W3017284194","https://openalex.org/W3019213887","https://openalex.org/W3023677370","https://openalex.org/W3041608326","https://openalex.org/W3044467104","https://openalex.org/W3048080918","https://openalex.org/W3086085637","https://openalex.org/W3086691933","https://openalex.org/W3089803450","https://openalex.org/W3093963329","https://openalex.org/W3094409141","https://openalex.org/W3095763457","https://openalex.org/W3099496190","https://openalex.org/W3108523702","https://openalex.org/W3110895572","https://openalex.org/W3111424251","https://openalex.org/W3121429485","https://openalex.org/W3122157032","https://openalex.org/W3127235117","https://openalex.org/W3132170817","https://openalex.org/W3133695632","https://openalex.org/W3134033695","https://openalex.org/W3135390224","https://openalex.org/W3139075290","https://openalex.org/W3157833237","https://openalex.org/W3161401306","https://openalex.org/W3177123622","https://openalex.org/W3177747013","https://openalex.org/W3191200601","https://openalex.org/W3196936640","https://openalex.org/W3200458999","https://openalex.org/W3201934199","https://openalex.org/W3204802030","https://openalex.org/W3207748947","https://openalex.org/W3210712771","https://openalex.org/W3211718555","https://openalex.org/W4200379983","https://openalex.org/W4200476121","https://openalex.org/W4210652825","https://openalex.org/W4212942915","https://openalex.org/W4220941514","https://openalex.org/W4224209744","https://openalex.org/W4231917197","https://openalex.org/W4233468411","https://openalex.org/W4237335579","https://openalex.org/W4252891577","https://openalex.org/W4254010265","https://openalex.org/W4254747188","https://openalex.org/W4283797529","https://openalex.org/W4286250189","https://openalex.org/W4292247013","https://openalex.org/W4294216483","https://openalex.org/W4296328527","https://openalex.org/W4303579455","https://openalex.org/W4306353191","https://openalex.org/W4308574755","https://openalex.org/W4308990258","https://openalex.org/W4309506674","https://openalex.org/W4310705764","https://openalex.org/W4310707316","https://openalex.org/W4313418778","https://openalex.org/W4316466703","https://openalex.org/W4317035829","https://openalex.org/W4318670358","https://openalex.org/W4323362777","https://openalex.org/W4323538911","https://openalex.org/W4360868603","https://openalex.org/W4382405133","https://openalex.org/W4382461109","https://openalex.org/W4386332607","https://openalex.org/W4386496303","https://openalex.org/W4386813310","https://openalex.org/W4387932267","https://openalex.org/W4388007339","https://openalex.org/W4388615774","https://openalex.org/W4388637392","https://openalex.org/W4388751802","https://openalex.org/W4389163895","https://openalex.org/W4390678097","https://openalex.org/W4391230846","https://openalex.org/W4400281685","https://openalex.org/W4401526016","https://openalex.org/W4401841305","https://openalex.org/W4405388432","https://openalex.org/W6656349591","https://openalex.org/W6803550328","https://openalex.org/W6857529836"],"related_works":["https://openalex.org/W1982829397","https://openalex.org/W2347437365","https://openalex.org/W2106414650","https://openalex.org/W1999412725","https://openalex.org/W4390205769","https://openalex.org/W2124137418","https://openalex.org/W2391458050","https://openalex.org/W3022402204","https://openalex.org/W2086860678","https://openalex.org/W2114732768"],"abstract_inverted_index":{"Advancements":[0],"with":[1],"cost-effective,":[2],"high-throughput":[3],"omics":[4],"technologies":[5],"have":[6,23,53,126],"had":[7],"a":[8,25,55,86,138,150,171,175,191,248],"transformative":[9],"effect":[10],"on":[11,149,183,224],"both":[12],"fundamental":[13],"and":[14,165,220,243],"translational":[15],"research":[16],"in":[17,110],"the":[18,28,48,78,105,128,144,157,200,245,253],"medical":[19],"sciences.":[20],"These":[21],"advancements":[22],"facilitated":[24],"departure":[26],"from":[27,100,210],"traditional":[29],"view":[30],"of":[31,40,43,58,68,77,85,97,115,143,177,202,213,241,247,252],"human":[32,88,254],"red":[33],"blood":[34,218],"cells":[35],"(RBCs)":[36],"as":[37,231],"mere":[38],"carriers":[39],"hemoglobin,":[41],"devoid":[42],"significant":[44],"biological":[45],"complexity.":[46],"Over":[47],"past":[49,106],"decade,":[50],"proteomic":[51,98,211],"analyses":[52],"identified":[54],"growing":[56],"number":[57],"different":[59],"proteins":[60,181],"present":[61],"within":[62],"RBCs,":[63],"enabling":[64],"systems":[65],"biology":[66],"analysis":[67],"their":[69,225],"physiological":[70],"functions.":[71],"Here,":[72],"we":[73,125],"introduce":[74],"RBC-GEM,":[75],"one":[76],"most":[79],"comprehensive,":[80],"curated":[81,234],"genome-scale":[82,139],"metabolic":[83,129,140,161,172],"reconstructions":[84],"specific":[87],"cell":[89],"type":[90],"to-date.":[91],"It":[92],"was":[93],"developed":[94],"through":[95,187],"meta-analysis":[96],"data":[99,166,212,242],"29":[101],"studies":[102],"published":[103],"over":[104,195],"two":[107],"decades":[108],"resulting":[109],"an":[111,232],"RBC":[112],"proteome":[113,135],"composed":[114],"more":[116],"than":[117],"4,600":[118],"distinct":[119],"proteins.":[120],"Through":[121],"workflow-guided":[122],"manual":[123],"curation,":[124],"compiled":[127],"reactions":[130,222],"carried":[131],"out":[132],"by":[133,204],"this":[134],"to":[136,156],"form":[137],"model":[141],"(GEM)":[142],"RBC.":[145,255],"RBC-GEM":[146,169,203],"is":[147,174],"hosted":[148],"version-controlled":[151],"GitHub":[152],"repository,":[153],"ensuring":[154],"adherence":[155],"standardized":[158],"protocols":[159],"for":[160,216,239,244],"reconstruction":[162,230],"quality":[163],"control":[164],"stewardship":[167],"principles.":[168],"represents":[170],"network":[173],"consisting":[176],"820":[178],"genes":[179],"encoding":[180],"acting":[182],"1,685":[184],"unique":[185],"metabolites":[186],"2,723":[188],"biochemical":[189],"reactions:":[190],"740%":[192],"size":[193],"expansion":[194],"its":[196],"predecessor.":[197],"We":[198],"demonstrated":[199],"utility":[201],"creating":[205],"context-specific":[206],"proteome-constrained":[207],"models":[208,251],"derived":[209],"stored":[214],"RBCs":[215],"616":[217],"donors,":[219],"classified":[221],"based":[223],"simulated":[226],"abundance":[227],"dependence.":[228],"This":[229],"up-to-date":[233],"GEM":[235],"can":[236],"be":[237],"used":[238],"contextualization":[240],"construction":[246],"computational":[249],"whole-cell":[250]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":5}],"updated_date":"2026-08-12T07:12:00.856984","created_date":"2025-10-10T00:00:00"}
