{"id":"https://openalex.org/W4403598089","doi":"https://doi.org/10.1371/journal.pcbi.1012083","title":"scCaT: An explainable capsulating architecture for sepsis diagnosis transferring from single-cell RNA sequencing","display_name":"scCaT: An explainable capsulating architecture for sepsis diagnosis transferring from single-cell RNA sequencing","publication_year":2024,"publication_date":"2024-10-21","ids":{"openalex":"https://openalex.org/W4403598089","doi":"https://doi.org/10.1371/journal.pcbi.1012083","pmid":"https://pubmed.ncbi.nlm.nih.gov/39432561"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1012083","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1012083","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1371/journal.pcbi.1012083","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5035816463","display_name":"Xubin Zheng","orcid":"https://orcid.org/0000-0003-2322-857X"},"institutions":[{"id":"https://openalex.org/I159948400","display_name":"Jinan University","ror":"https://ror.org/02xe5ns62","country_code":"CN","type":"education","lineage":["https://openalex.org/I159948400"]},{"id":"https://openalex.org/I3045169105","display_name":"Southern University of Science and Technology","ror":"https://ror.org/049tv2d57","country_code":"CN","type":"education","lineage":["https://openalex.org/I3045169105"]},{"id":"https://openalex.org/I4396570619","display_name":"Great Bay University","ror":"https://ror.org/01hdgge16","country_code":null,"type":"education","lineage":["https://openalex.org/I4396570619"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xubin Zheng","raw_affiliation_strings":["Department of Critical Care Medicine, Shenzhen People's Hospital, the First Affiliated Hospital of Southern University of Science and Technology, the Second Clinical Medicine College of Jinan University, Shenzhen, China","Guangdong Provincial Key Laboratory of Mathematical and Neural Dynamical Systems, Guangzhou, China","School of Computing and Information Technology, Great Bay University, Guangdong, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Critical Care Medicine, Shenzhen People's Hospital, the First Affiliated Hospital of Southern University of Science and Technology, the Second Clinical Medicine College of Jinan University, Shenzhen, China","institution_ids":["https://openalex.org/I3045169105","https://openalex.org/I159948400"]},{"raw_affiliation_string":"Guangdong Provincial Key Laboratory of Mathematical and Neural Dynamical Systems, Guangzhou, China","institution_ids":[]},{"raw_affiliation_string":"School of Computing and Information Technology, Great Bay University, Guangdong, China","institution_ids":["https://openalex.org/I4396570619"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065269839","display_name":"Dian Meng","orcid":"https://orcid.org/0009-0002-7192-0536"},"institutions":[{"id":"https://openalex.org/I4396570619","display_name":"Great Bay University","ror":"https://ror.org/01hdgge16","country_code":null,"type":"education","lineage":["https://openalex.org/I4396570619"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Dian Meng","raw_affiliation_strings":["School of Computing and Information Technology, Great Bay University, Guangdong, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing and Information Technology, Great Bay University, Guangdong, China","institution_ids":["https://openalex.org/I4396570619"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100646807","display_name":"Duo Chen","orcid":"https://orcid.org/0000-0002-7816-8618"},"institutions":[{"id":"https://openalex.org/I183519381","display_name":"Capital Medical University","ror":"https://ror.org/013xs5b60","country_code":"CN","type":"education","lineage":["https://openalex.org/I183519381"]},{"id":"https://openalex.org/I2800232565","display_name":"Beijing Chao-Yang Hospital, Capital Medical University","ror":"https://ror.org/01eff5662","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I2800232565","https://openalex.org/I4210110145","https://openalex.org/I4210135108"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Duo Chen","raw_affiliation_strings":["Department of Nosocomial Infection Prevention and Control, Beijing Institute of Respiratory Medicine and Beijing Chao-Yang Hospital, Capital Medical University, Beijing, China","Department of Respiratory and Critical Care Medicine, Beijing Institute of Respiratory Medicine and Beijing Chao-Yang Hospital, Capital Medical University, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Nosocomial Infection Prevention and Control, Beijing Institute of Respiratory Medicine and Beijing Chao-Yang Hospital, Capital Medical University, Beijing, China","institution_ids":["https://openalex.org/I2800232565","https://openalex.org/I183519381"]},{"raw_affiliation_string":"Department of Respiratory and Critical Care Medicine, Beijing Institute of Respiratory Medicine and Beijing Chao-Yang Hospital, Capital Medical University, Beijing, China","institution_ids":["https://openalex.org/I2800232565","https://openalex.org/I183519381"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111177650","display_name":"Wan-Ki Wong","orcid":null},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["HK"],"is_corresponding":true,"raw_author_name":"Wan-Ki Wong","raw_affiliation_strings":["Department of Computer Science and Engineering, The Chinese University of Hong Kong, Shatin, Hong Kong"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, The Chinese University of Hong Kong, Shatin, Hong Kong","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111177651","display_name":"Ka-Ho To","orcid":null},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["HK"],"is_corresponding":true,"raw_author_name":"Ka-Ho To","raw_affiliation_strings":["Department of Computer Science and Engineering, The Chinese University of Hong Kong, Shatin, Hong Kong"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, The Chinese University of Hong Kong, Shatin, Hong Kong","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100583771","display_name":"Lei Zhu","orcid":"https://orcid.org/0009-0009-3541-5031"},"institutions":[{"id":"https://openalex.org/I168719708","display_name":"City University of Hong Kong","ror":"https://ror.org/03q8dnn23","country_code":"HK","type":"education","lineage":["https://openalex.org/I168719708"]}],"countries":["HK"],"is_corresponding":true,"raw_author_name":"Lei Zhu","raw_affiliation_strings":["Department of Computer Science, City University of Hong Kong, Kowloon, Hong Kong"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, City University of Hong Kong, Kowloon, Hong Kong","institution_ids":["https://openalex.org/I168719708"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103243667","display_name":"Jiarui Wu","orcid":"https://orcid.org/0000-0002-3065-5599"},"institutions":[{"id":"https://openalex.org/I4210128910","display_name":"Group Sense (China)","ror":"https://ror.org/036wd5777","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210128910"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"JiaFei Wu","raw_affiliation_strings":["SenseTime Research, Zhejiang, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"SenseTime Research, Zhejiang, China","institution_ids":["https://openalex.org/I4210128910"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101266900","display_name":"Yining Liang","orcid":null},"institutions":[{"id":"https://openalex.org/I3045169105","display_name":"Southern University of Science and Technology","ror":"https://ror.org/049tv2d57","country_code":"CN","type":"education","lineage":["https://openalex.org/I3045169105"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yining Liang","raw_affiliation_strings":["Southern University of Science and Technology, Guangdong, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Southern University of Science and Technology, Guangdong, China","institution_ids":["https://openalex.org/I3045169105"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113582655","display_name":"Kwong\u2010Sak Leung","orcid":null},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]},{"id":"https://openalex.org/I64427410","display_name":"Hong Kong Shue Yan University","ror":"https://ror.org/023t8mt09","country_code":"CN","type":"education","lineage":["https://openalex.org/I64427410"]}],"countries":["CN","HK"],"is_corresponding":true,"raw_author_name":"Kwong-Sak Leung","raw_affiliation_strings":["Department of Applied Data Science, Shue Yan University, North Point, Hong Kong","Department of Computer Science and Engineering, The Chinese University of Hong Kong, Shatin, Hong Kong"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Applied Data Science, Shue Yan University, North Point, Hong Kong","institution_ids":["https://openalex.org/I64427410"]},{"raw_affiliation_string":"Department of Computer Science and Engineering, The Chinese University of Hong Kong, Shatin, Hong Kong","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108437966","display_name":"Man\u2010Hon Wong","orcid":null},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["HK"],"is_corresponding":true,"raw_author_name":"Man-Hon Wong","raw_affiliation_strings":["Department of Computer Science and Engineering, The Chinese University of Hong Kong, Shatin, Hong Kong"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, The Chinese University of Hong Kong, Shatin, Hong Kong","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5021845548","display_name":"Lixin Cheng","orcid":"https://orcid.org/0000-0002-9427-383X"},"institutions":[{"id":"https://openalex.org/I159948400","display_name":"Jinan University","ror":"https://ror.org/02xe5ns62","country_code":"CN","type":"education","lineage":["https://openalex.org/I159948400"]},{"id":"https://openalex.org/I3045169105","display_name":"Southern University of Science and Technology","ror":"https://ror.org/049tv2d57","country_code":"CN","type":"education","lineage":["https://openalex.org/I3045169105"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Lixin Cheng","raw_affiliation_strings":["Department of Critical Care Medicine, Shenzhen People's Hospital, the First Affiliated Hospital of Southern University of Science and Technology, the Second Clinical Medicine College of Jinan University, Shenzhen, China"],"raw_orcid":"https://orcid.org/0000-0002-9427-383X","affiliations":[{"raw_affiliation_string":"Department of Critical Care Medicine, Shenzhen People's Hospital, the First Affiliated Hospital of Southern University of Science and Technology, the Second Clinical Medicine College of Jinan University, Shenzhen, China","institution_ids":["https://openalex.org/I3045169105","https://openalex.org/I159948400"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5021845548","https://openalex.org/A5035816463","https://openalex.org/A5065269839","https://openalex.org/A5100583771","https://openalex.org/A5100646807","https://openalex.org/A5101266900","https://openalex.org/A5103243667","https://openalex.org/A5108437966","https://openalex.org/A5111177650","https://openalex.org/A5111177651","https://openalex.org/A5113582655"],"corresponding_institution_ids":["https://openalex.org/I159948400","https://openalex.org/I168719708","https://openalex.org/I177725633","https://openalex.org/I183519381","https://openalex.org/I2800232565","https://openalex.org/I3045169105","https://openalex.org/I4210128910","https://openalex.org/I4396570619","https://openalex.org/I64427410"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":1.952,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.86531911,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"20","issue":"10","first_page":"e1012083","last_page":"e1012083"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9837999939918518,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.929099977016449,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sepsis","display_name":"Sepsis","score":0.7461621165275574},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.5458810329437256},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.5328256487846375},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5000560283660889},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.455111563205719},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3918547034263611},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.36452966928482056},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3629220128059387},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3513551950454712},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.34784209728240967},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.3314115107059479},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.1984652876853943},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13205289840698242}],"concepts":[{"id":"https://openalex.org/C2778384902","wikidata":"https://www.wikidata.org/wiki/Q183134","display_name":"Sepsis","level":2,"score":0.7461621165275574},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.5458810329437256},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.5328256487846375},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5000560283660889},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.455111563205719},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3918547034263611},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.36452966928482056},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3629220128059387},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3513551950454712},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.34784209728240967},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3314115107059479},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.1984652876853943},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13205289840698242}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D018805","descriptor_name":"Sepsis","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D018805","descriptor_name":"Sepsis","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D018805","descriptor_name":"Sepsis","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D018805","descriptor_name":"Sepsis","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D018805","descriptor_name":"Sepsis","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D018805","descriptor_name":"Sepsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D018805","descriptor_name":"Sepsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D018805","descriptor_name":"Sepsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D018805","descriptor_name":"Sepsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D018805","descriptor_name":"Sepsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1371/journal.pcbi.1012083","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1012083","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:39432561","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39432561","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11527285","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11527285","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11527285/pdf/pcbi.1012083.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:publications/265be5b9-3549-4ea7-b2d8-a9ff50016c2f","is_oa":true,"landing_page_url":"https://hdl.handle.net/2031/265be5b9-3549-4ea7-b2d8-a9ff50016c2f","pdf_url":null,"source":{"id":"https://openalex.org/S7407055387","display_name":"CityU Scholars","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Zheng, X, Meng, D, Chen, D, Wong, W-K, To, K-H, Zhu, L, Wu, J, Liang, Y, Leung, K-S, Wong, M-H & Cheng, L 2024, 'scCaT : An explainable capsulating architecture for sepsis diagnosis transferring from single-cell RNA sequencing', PLoS Computational Biology, vol. 20, no. 10, e1012083. https://doi.org/10.1371/journal.pcbi.1012083","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1012083","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1012083","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.8700000047683716,"display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G6293673550","display_name":null,"funder_award_id":"A2303033","funder_id":"https://openalex.org/F4320336085","funder_display_name":"Shenzhen Hospital, Southern Medical University"},{"id":"https://openalex.org/G688162940","display_name":null,"funder_award_id":"32300554","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6967701105","display_name":null,"funder_award_id":"32370711","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320336085","display_name":"Shenzhen Hospital, Southern Medical University","ror":"https://ror.org/037c01n91"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":42,"referenced_works":["https://openalex.org/W163419591","https://openalex.org/W1964948905","https://openalex.org/W1966858538","https://openalex.org/W1971240021","https://openalex.org/W1981645153","https://openalex.org/W1999517476","https://openalex.org/W2039057018","https://openalex.org/W2041461587","https://openalex.org/W2054469201","https://openalex.org/W2091584908","https://openalex.org/W2108473659","https://openalex.org/W2114704109","https://openalex.org/W2127506019","https://openalex.org/W2195240341","https://openalex.org/W2347194146","https://openalex.org/W2510031061","https://openalex.org/W2601402288","https://openalex.org/W2750557731","https://openalex.org/W2763138542","https://openalex.org/W2789799087","https://openalex.org/W2791564057","https://openalex.org/W2808825101","https://openalex.org/W2936774411","https://openalex.org/W2963703618","https://openalex.org/W3006033724","https://openalex.org/W3113233691","https://openalex.org/W3154984820","https://openalex.org/W4206010614","https://openalex.org/W4206760173","https://openalex.org/W4206929266","https://openalex.org/W4233441564","https://openalex.org/W4281626913","https://openalex.org/W4286252253","https://openalex.org/W4308834893","https://openalex.org/W4321612076","https://openalex.org/W4322730846","https://openalex.org/W4385245566","https://openalex.org/W4390828321","https://openalex.org/W4396881894","https://openalex.org/W4401200601","https://openalex.org/W6739901393","https://openalex.org/W6743446608"],"related_works":["https://openalex.org/W3215560449","https://openalex.org/W3030236844","https://openalex.org/W2832459556","https://openalex.org/W4237737355","https://openalex.org/W1520457732","https://openalex.org/W2794721326","https://openalex.org/W4385384888","https://openalex.org/W2979695286","https://openalex.org/W1998617258","https://openalex.org/W4380075502"],"abstract_inverted_index":{"Sepsis":[0],"is":[1],"a":[2,58,73,112,168],"life-threatening":[3],"condition":[4],"characterized":[5],"by":[6],"an":[7,126,136],"exaggerated":[8],"immune":[9],"response":[10],"to":[11,14,53,71,85,114,179],"pathogens,":[12],"leading":[13],"organ":[15],"damage":[16],"and":[17,35,46,82,118,135,154,175],"high":[18,123],"mortality":[19],"rates":[20],"in":[21,38,104,186],"the":[22,66,131,147,177],"intensive":[23],"care":[24],"unit.":[25],"Although":[26],"deep":[27,59],"learning":[28,60,172],"has":[29],"achieved":[30],"impressive":[31],"performance":[32],"on":[33,98,130,141,161],"prediction":[34],"classification":[36],"tasks":[37],"medicine,":[39],"it":[40,84],"requires":[41],"large":[42],"amounts":[43],"of":[44,128,139],"data":[45,81,181],"lacks":[47],"explainability,":[48],"which":[49,64,101],"hinder":[50],"its":[51],"application":[52],"sepsis":[54,74,116,156],"diagnosis.":[55],"We":[56],"introduce":[57],"framework,":[61],"called":[62],"scCaT,":[63],"blends":[65],"capsulating":[67,90],"architecture":[68,91],"with":[69,125,190],"Transformer":[70,109],"develop":[72],"diagnostic":[75],"model":[76,121,178],"using":[77],"single-cell":[78,132],"RNA":[79,87,144],"sequencing":[80],"transfers":[83],"bulk":[86,143],"data.":[88],"The":[89,108],"effectively":[92],"groups":[93],"genes":[94],"into":[95],"capsules":[96,148],"based":[97,160],"biological":[99,163],"functions,":[100],"provides":[102],"explainability":[103],"encoding":[105],"gene":[106,173],"expressions.":[107],"serves":[110],"as":[111],"decoder":[113],"classify":[115],"patients":[117],"controls.":[119],"Our":[120],"achieves":[122],"accuracy":[124],"AUROC":[127,138],"0.93":[129],"test":[133],"set":[134],"average":[137],"0.98":[140],"seven":[142],"cohorts.":[145],"Additionally,":[146],"can":[149],"recognize":[150],"different":[151],"cell":[152],"types":[153],"distinguish":[155],"from":[157],"control":[158],"samples":[159],"their":[162],"pathways.":[164],"This":[165],"study":[166],"presents":[167],"novel":[169],"approach":[170],"for":[171],"modules":[174],"transferring":[176],"other":[180],"types,":[182],"offering":[183],"potential":[184],"benefits":[185],"diagnosing":[187],"rare":[188],"diseases":[189],"limited":[191],"subjects.":[192]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":1}],"updated_date":"2026-05-09T13:55:54.758798","created_date":"2025-10-10T00:00:00"}
