{"id":"https://openalex.org/W4392451941","doi":"https://doi.org/10.1371/journal.pcbi.1011881","title":"LAP: Liability Antibody Profiler by sequence &amp; structural mapping of natural and therapeutic antibodies","display_name":"LAP: Liability Antibody Profiler by sequence &amp; structural mapping of natural and therapeutic antibodies","publication_year":2024,"publication_date":"2024-03-05","ids":{"openalex":"https://openalex.org/W4392451941","doi":"https://doi.org/10.1371/journal.pcbi.1011881","pmid":"https://pubmed.ncbi.nlm.nih.gov/38442111"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1011881","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1011881","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1011881&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1011881&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030968598","display_name":"Tadeusz Sat\u0142awa","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Tadeusz Sat\u0142awa","raw_affiliation_strings":["Natural Antibody, Krak\u00f3w, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Natural Antibody, Krak\u00f3w, Poland","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006652417","display_name":"Mateusz Tarkowski","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Mateusz Tarkowski","raw_affiliation_strings":["Natural Antibody, Krak\u00f3w, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Natural Antibody, Krak\u00f3w, Poland","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018975215","display_name":"Sonia Wr\u00f3bel","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Sonia Wr\u00f3bel","raw_affiliation_strings":["Natural Antibody, Krak\u00f3w, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Natural Antibody, Krak\u00f3w, Poland","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009007983","display_name":"Pawe\u0142 Dudzic","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Pawe\u0142 Dudzic","raw_affiliation_strings":["Natural Antibody, Krak\u00f3w, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Natural Antibody, Krak\u00f3w, Poland","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5092422088","display_name":"Tomasz Gaw\u0142owski","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Tomasz Gaw\u0142owski","raw_affiliation_strings":["Natural Antibody, Krak\u00f3w, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Natural Antibody, Krak\u00f3w, Poland","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024129889","display_name":"Tomasz Klaus","orcid":"https://orcid.org/0000-0003-3233-3646"},"institutions":[{"id":"https://openalex.org/I4210101496","display_name":"Pure Biologics (Poland)","ror":"https://ror.org/010c3p773","country_code":"PL","type":"company","lineage":["https://openalex.org/I4210101496"]}],"countries":["PL"],"is_corresponding":true,"raw_author_name":"Tomasz Klaus","raw_affiliation_strings":["Pure Biologics, Wroc\u0142aw, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Pure Biologics, Wroc\u0142aw, Poland","institution_ids":["https://openalex.org/I4210101496"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001856991","display_name":"Marek Or\u0142owski","orcid":"https://orcid.org/0000-0003-1282-2282"},"institutions":[{"id":"https://openalex.org/I11923345","display_name":"Wroc\u0142aw University of Science and Technology","ror":"https://ror.org/008fyn775","country_code":"PL","type":"education","lineage":["https://openalex.org/I11923345"]},{"id":"https://openalex.org/I4210101496","display_name":"Pure Biologics (Poland)","ror":"https://ror.org/010c3p773","country_code":"PL","type":"company","lineage":["https://openalex.org/I4210101496"]},{"id":"https://openalex.org/I686019","display_name":"AGH University of Krakow","ror":"https://ror.org/00bas1c41","country_code":"PL","type":"education","lineage":["https://openalex.org/I686019"]}],"countries":["PL"],"is_corresponding":true,"raw_author_name":"Marek Or\u0142owski","raw_affiliation_strings":["Department of Biochemistry, Molecular Biology and Biotechnology, Faculty of Chemistry, Wroc\u0142aw University of Science and Technology, Wroc\u0142aw, Poland","Pure Biologics, Wroc\u0142aw, Poland"],"raw_orcid":"https://orcid.org/0000-0003-1282-2282","affiliations":[{"raw_affiliation_string":"Department of Biochemistry, Molecular Biology and Biotechnology, Faculty of Chemistry, Wroc\u0142aw University of Science and Technology, Wroc\u0142aw, Poland","institution_ids":["https://openalex.org/I11923345","https://openalex.org/I686019"]},{"raw_affiliation_string":"Pure Biologics, Wroc\u0142aw, Poland","institution_ids":["https://openalex.org/I4210101496"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034274844","display_name":"Anna Kostyn","orcid":null},"institutions":[{"id":"https://openalex.org/I4210101496","display_name":"Pure Biologics (Poland)","ror":"https://ror.org/010c3p773","country_code":"PL","type":"company","lineage":["https://openalex.org/I4210101496"]}],"countries":["PL"],"is_corresponding":true,"raw_author_name":"Anna Kostyn","raw_affiliation_strings":["Pure Biologics, Wroc\u0142aw, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Pure Biologics, Wroc\u0142aw, Poland","institution_ids":["https://openalex.org/I4210101496"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108051393","display_name":"Sandeep Kumar","orcid":"https://orcid.org/0000-0002-3250-4866"},"institutions":[{"id":"https://openalex.org/I4210108601","display_name":"Moderna Therapeutics (United States)","ror":"https://ror.org/01xm4wg91","country_code":"US","type":"company","lineage":["https://openalex.org/I4210108601"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Sandeep Kumar","raw_affiliation_strings":["Moderna Inc, Cambridge, Massachusetts, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Moderna Inc, Cambridge, Massachusetts, United States of America","institution_ids":["https://openalex.org/I4210108601"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047680966","display_name":"Andrew Buchanan","orcid":"https://orcid.org/0000-0002-5191-7682"},"institutions":[{"id":"https://openalex.org/I105036370","display_name":"AstraZeneca (United Kingdom)","ror":"https://ror.org/04r9x1a08","country_code":"GB","type":"company","lineage":["https://openalex.org/I105036370"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Andrew Buchanan","raw_affiliation_strings":["Biologics Engineering, AstraZeneca, Cambridge, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biologics Engineering, AstraZeneca, Cambridge, United Kingdom","institution_ids":["https://openalex.org/I105036370"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015244397","display_name":"Konrad Krawczyk","orcid":"https://orcid.org/0000-0003-0697-5522"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Konrad Krawczyk","raw_affiliation_strings":["Natural Antibody, Krak\u00f3w, Poland"],"raw_orcid":"https://orcid.org/0000-0003-0697-5522","affiliations":[{"raw_affiliation_string":"Natural Antibody, Krak\u00f3w, Poland","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5001856991","https://openalex.org/A5006652417","https://openalex.org/A5009007983","https://openalex.org/A5015244397","https://openalex.org/A5018975215","https://openalex.org/A5024129889","https://openalex.org/A5030968598","https://openalex.org/A5034274844","https://openalex.org/A5047680966","https://openalex.org/A5092422088","https://openalex.org/A5108051393"],"corresponding_institution_ids":["https://openalex.org/I105036370","https://openalex.org/I11923345","https://openalex.org/I4210101496","https://openalex.org/I4210108601","https://openalex.org/I686019"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":4.1534,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.94018026,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":98},"biblio":{"volume":"20","issue":"3","first_page":"e1011881","last_page":"e1011881"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12255","display_name":"Biosimilars and Bioanalytical Methods","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11124","display_name":"Protein purification and stability","score":0.9919000267982483,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/liability","display_name":"Liability","score":0.7195864915847778},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5269792079925537},{"id":"https://openalex.org/keywords/deamidation","display_name":"Deamidation","score":0.5157178044319153},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5110534429550171},{"id":"https://openalex.org/keywords/antibody","display_name":"Antibody","score":0.4733288884162903},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.42945367097854614},{"id":"https://openalex.org/keywords/business","display_name":"Business","score":0.28112316131591797},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.24179837107658386},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.23648610711097717},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2170364260673523},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.17031949758529663},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.14882433414459229}],"concepts":[{"id":"https://openalex.org/C2777834853","wikidata":"https://www.wikidata.org/wiki/Q96776939","display_name":"Liability","level":2,"score":0.7195864915847778},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5269792079925537},{"id":"https://openalex.org/C2780784506","wikidata":"https://www.wikidata.org/wiki/Q4859711","display_name":"Deamidation","level":3,"score":0.5157178044319153},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5110534429550171},{"id":"https://openalex.org/C159654299","wikidata":"https://www.wikidata.org/wiki/Q79460","display_name":"Antibody","level":2,"score":0.4733288884162903},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.42945367097854614},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.28112316131591797},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.24179837107658386},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.23648610711097717},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2170364260673523},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17031949758529663},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.14882433414459229},{"id":"https://openalex.org/C10138342","wikidata":"https://www.wikidata.org/wiki/Q43015","display_name":"Finance","level":1,"score":0.0},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":true},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":true},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":true},{"descriptor_ui":"D011336","descriptor_name":"Probability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011336","descriptor_name":"Probability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011336","descriptor_name":"Probability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1371/journal.pcbi.1011881","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1011881","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1011881&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:38442111","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38442111","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10957075","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10957075","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10957075/pdf/pcbi.1011881.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:cff3dcbea5874d0a8c29f6bd8aadeb8d","is_oa":false,"landing_page_url":"https://doaj.org/article/cff3dcbea5874d0a8c29f6bd8aadeb8d","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 20, Iss 3, p e1011881 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1011881","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1011881","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1011881&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4392451941.pdf"},"referenced_works_count":50,"referenced_works":["https://openalex.org/W1576773659","https://openalex.org/W1579831267","https://openalex.org/W1598549103","https://openalex.org/W1799924036","https://openalex.org/W1855237549","https://openalex.org/W1968037422","https://openalex.org/W2003326194","https://openalex.org/W2009727305","https://openalex.org/W2032527209","https://openalex.org/W2072086606","https://openalex.org/W2107297174","https://openalex.org/W2123480018","https://openalex.org/W2312678167","https://openalex.org/W2489959610","https://openalex.org/W2573203309","https://openalex.org/W2578029714","https://openalex.org/W2588231484","https://openalex.org/W2737115269","https://openalex.org/W2890382137","https://openalex.org/W2905282967","https://openalex.org/W2913847447","https://openalex.org/W2923692528","https://openalex.org/W2950118240","https://openalex.org/W2967886424","https://openalex.org/W2978043812","https://openalex.org/W2979982423","https://openalex.org/W2997321681","https://openalex.org/W2999388928","https://openalex.org/W3038869230","https://openalex.org/W3093581545","https://openalex.org/W3139404958","https://openalex.org/W3206187363","https://openalex.org/W3214417031","https://openalex.org/W3214750573","https://openalex.org/W4213244137","https://openalex.org/W4220997534","https://openalex.org/W4255659575","https://openalex.org/W4281295068","https://openalex.org/W4285386587","https://openalex.org/W4294804909","https://openalex.org/W4294990817","https://openalex.org/W4307839767","https://openalex.org/W4308918781","https://openalex.org/W4309160675","https://openalex.org/W4312212351","https://openalex.org/W4362693081","https://openalex.org/W4366352959","https://openalex.org/W4378714914","https://openalex.org/W4389043244","https://openalex.org/W6842739755"],"related_works":["https://openalex.org/W2085698632","https://openalex.org/W2030113604","https://openalex.org/W2085520623","https://openalex.org/W2075019601","https://openalex.org/W2763450065","https://openalex.org/W2000005896","https://openalex.org/W2009383936","https://openalex.org/W2972551280","https://openalex.org/W2810124926","https://openalex.org/W2143598772"],"abstract_inverted_index":{"Antibody-based":[0],"therapeutics":[1],"must":[2],"not":[3],"undergo":[4],"chemical":[5,26,112,127],"modifications":[6],"that":[7,51,79,131,142,186],"would":[8],"impair":[9],"their":[10,14,30,64],"efficacy":[11],"or":[12],"hinder":[13],"developability.":[15],"A":[16],"commonly":[17],"used":[18],"technique":[19],"to":[20,92,104],"de-risk":[21],"lead":[22,99],"biotherapeutic":[23],"candidates":[24],"annotates":[25],"liability":[27,61,80,94,113,138,168],"motifs":[28,62,95,114,139],"on":[29,156],"sequence.":[31],"By":[32],"analyzing":[33],"sequences":[34],"from":[35,98],"all":[36,53],"major":[37],"sources":[38],"of":[39,58,67,123,137,151],"data":[40],"(therapeutics,":[41],"patents,":[42],"GenBank,":[43],"literature,":[44],"and":[45,119,163,170,191],"next-generation":[46],"sequencing":[47],"outputs),":[48],"we":[49,86],"find":[50],"almost":[52],"antibodies":[54],"contain":[55],"an":[56],"average":[57],"3-4":[59],"such":[60],"in":[63,73,116,193],"paratopes,":[65],"irrespective":[66],"the":[68,76,144,167],"source":[69],"dataset.":[70],"This":[71],"is":[72,83],"line":[74],"with":[75],"common":[77],"wisdom":[78],"motif":[81],"annotation":[82],"over-predictive.":[84],"Therefore,":[85],"have":[87,147],"compiled":[88],"three":[89],"computational":[90],"flags":[91,133,171],"prioritize":[93],"for":[96,126],"removal":[97],"drug":[100],"candidates:":[101],"1.":[102],"germline,":[103],"reflect":[105],"naturally":[106],"occurring":[107],"motifs,":[108],"2.":[109],"therapeutic,":[110],"reflecting":[111],"found":[115],"therapeutic":[117,195],"antibodies,":[118],"3.":[120],"surface,":[121],"indicative":[122],"structural":[124],"accessibility":[125],"modification.":[128],"We":[129,165,184],"show":[130],"these":[132],"annotate":[134],"approximately":[135],"60%":[136],"as":[140,154],"benign,":[141],"is,":[143],"flagged":[145],"liabilities":[146],"a":[148,173],"smaller":[149],"probability":[150],"undergoing":[152],"degradation":[153],"benchmarked":[155],"two":[157],"experimental":[158],"datasets":[159],"covering":[160],"deamidation,":[161],"isomerization,":[162],"oxidation.":[164],"combined":[166],"detection":[169],"into":[172],"tool":[174],"called":[175],"Liability":[176],"Antibody":[177],"Profiler":[178],"(LAP),":[179],"publicly":[180],"available":[181],"at":[182],"lap.naturalantibody.com.":[183],"anticipate":[185],"LAP":[187],"will":[188],"save":[189],"time":[190],"effort":[192],"de-risking":[194],"molecules.":[196]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":5}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2024-03-06T00:00:00"}
