{"id":"https://openalex.org/W4392862201","doi":"https://doi.org/10.1371/journal.pcbi.1011848","title":"Ensemble dynamics and information flow deduction from whole-brain imaging data","display_name":"Ensemble dynamics and information flow deduction from whole-brain imaging data","publication_year":2024,"publication_date":"2024-03-15","ids":{"openalex":"https://openalex.org/W4392862201","doi":"https://doi.org/10.1371/journal.pcbi.1011848","pmid":"https://pubmed.ncbi.nlm.nih.gov/38489379"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1011848","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1011848","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1011848&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1011848&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5045488230","display_name":"Yu Toyoshima","orcid":"https://orcid.org/0000-0001-5239-2235"},"institutions":[{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Yu Toyoshima","raw_affiliation_strings":["Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Bunkyo-ku, Tokyo, Japan"],"raw_orcid":"https://orcid.org/0000-0001-5239-2235","affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Bunkyo-ku, Tokyo, Japan","institution_ids":["https://openalex.org/I74801974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034229225","display_name":"Hirofumi Sato","orcid":"https://orcid.org/0000-0001-6179-886X"},"institutions":[{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Hirofumi Sato","raw_affiliation_strings":["Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Bunkyo-ku, Tokyo, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Bunkyo-ku, Tokyo, Japan","institution_ids":["https://openalex.org/I74801974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040878919","display_name":"Daiki Nagata","orcid":null},"institutions":[{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Daiki Nagata","raw_affiliation_strings":["Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Bunkyo-ku, Tokyo, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Bunkyo-ku, Tokyo, Japan","institution_ids":["https://openalex.org/I74801974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071333276","display_name":"Manami Kanamori","orcid":null},"institutions":[{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Manami Kanamori","raw_affiliation_strings":["Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Bunkyo-ku, Tokyo, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Bunkyo-ku, Tokyo, Japan","institution_ids":["https://openalex.org/I74801974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086960979","display_name":"Moon\u2010Sun Jang","orcid":"https://orcid.org/0000-0002-2651-585X"},"institutions":[{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Moon Sun Jang","raw_affiliation_strings":["Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Bunkyo-ku, Tokyo, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Bunkyo-ku, Tokyo, Japan","institution_ids":["https://openalex.org/I74801974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037579253","display_name":"Koyo Kuze","orcid":null},"institutions":[{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Koyo Kuze","raw_affiliation_strings":["Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Bunkyo-ku, Tokyo, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Bunkyo-ku, Tokyo, Japan","institution_ids":["https://openalex.org/I74801974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028667770","display_name":"Suzu Oe","orcid":null},"institutions":[{"id":"https://openalex.org/I135598925","display_name":"Kyushu University","ror":"https://ror.org/00p4k0j84","country_code":"JP","type":"education","lineage":["https://openalex.org/I135598925"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Suzu Oe","raw_affiliation_strings":["Department of Biology, Faculty of Sciences, Kyushu University, Nishi-ku, Fukuoka, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, Faculty of Sciences, Kyushu University, Nishi-ku, Fukuoka, Japan","institution_ids":["https://openalex.org/I135598925"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048830659","display_name":"Takayuki Teramoto","orcid":"https://orcid.org/0000-0001-7060-7148"},"institutions":[{"id":"https://openalex.org/I135598925","display_name":"Kyushu University","ror":"https://ror.org/00p4k0j84","country_code":"JP","type":"education","lineage":["https://openalex.org/I135598925"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Takayuki Teramoto","raw_affiliation_strings":["Department of Biology, Faculty of Sciences, Kyushu University, Nishi-ku, Fukuoka, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, Faculty of Sciences, Kyushu University, Nishi-ku, Fukuoka, Japan","institution_ids":["https://openalex.org/I135598925"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083278365","display_name":"Yuishi Iwasaki","orcid":"https://orcid.org/0000-0001-7959-526X"},"institutions":[{"id":"https://openalex.org/I6178835","display_name":"Ibaraki University","ror":"https://ror.org/00sjd5653","country_code":"JP","type":"education","lineage":["https://openalex.org/I6178835"]},{"id":"https://openalex.org/I65143321","display_name":"Hitachi (Japan)","ror":"https://ror.org/02exqgm79","country_code":"JP","type":"company","lineage":["https://openalex.org/I65143321"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Yuishi Iwasaki","raw_affiliation_strings":["Department of Mechanical Systems Engineering, Graduate School of Science and Engineering, Ibaraki University, Hitachi, Ibaraki, Japan"],"raw_orcid":"https://orcid.org/0000-0001-7959-526X","affiliations":[{"raw_affiliation_string":"Department of Mechanical Systems Engineering, Graduate School of Science and Engineering, Ibaraki University, Hitachi, Ibaraki, Japan","institution_ids":["https://openalex.org/I6178835","https://openalex.org/I65143321"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031629643","display_name":"Ryo Yoshida","orcid":"https://orcid.org/0000-0001-8092-0162"},"institutions":[{"id":"https://openalex.org/I4210134673","display_name":"The Institute of Statistical Mathematics","ror":"https://ror.org/03jcejr58","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1319490839","https://openalex.org/I4210134673","https://openalex.org/I4210158934"]},{"id":"https://openalex.org/I4210158934","display_name":"Research Organization of Information and Systems","ror":"https://ror.org/04p4e8t29","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1319490839","https://openalex.org/I4210158934"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Ryo Yoshida","raw_affiliation_strings":["The Institute of Statistical Mathematics, Research Organization of Information and Systems, Tachikawa, Tokyo, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Institute of Statistical Mathematics, Research Organization of Information and Systems, Tachikawa, Tokyo, Japan","institution_ids":["https://openalex.org/I4210134673","https://openalex.org/I4210158934"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101871109","display_name":"Takeshi Ishihara","orcid":"https://orcid.org/0000-0001-9175-3072"},"institutions":[{"id":"https://openalex.org/I135598925","display_name":"Kyushu University","ror":"https://ror.org/00p4k0j84","country_code":"JP","type":"education","lineage":["https://openalex.org/I135598925"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Takeshi Ishihara","raw_affiliation_strings":["Department of Biology, Faculty of Sciences, Kyushu University, Nishi-ku, Fukuoka, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, Faculty of Sciences, Kyushu University, Nishi-ku, Fukuoka, Japan","institution_ids":["https://openalex.org/I135598925"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025060410","display_name":"Yuichi Iino","orcid":"https://orcid.org/0000-0002-0936-2660"},"institutions":[{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Yuichi Iino","raw_affiliation_strings":["Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Bunkyo-ku, Tokyo, Japan"],"raw_orcid":"https://orcid.org/0000-0002-0936-2660","affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Bunkyo-ku, Tokyo, Japan","institution_ids":["https://openalex.org/I74801974"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5025060410","https://openalex.org/A5028667770","https://openalex.org/A5031629643","https://openalex.org/A5034229225","https://openalex.org/A5037579253","https://openalex.org/A5040878919","https://openalex.org/A5045488230","https://openalex.org/A5048830659","https://openalex.org/A5071333276","https://openalex.org/A5083278365","https://openalex.org/A5086960979","https://openalex.org/A5101871109"],"corresponding_institution_ids":["https://openalex.org/I135598925","https://openalex.org/I4210134673","https://openalex.org/I4210158934","https://openalex.org/I6178835","https://openalex.org/I65143321","https://openalex.org/I74801974"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":0.9757,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.71788027,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"20","issue":"3","first_page":"e1011848","last_page":"e1011848"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12236","display_name":"Photoreceptor and optogenetics research","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12236","display_name":"Photoreceptor and optogenetics research","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10581","display_name":"Neural dynamics and brain function","score":0.9936000108718872,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10676","display_name":"Genetics, Aging, and Longevity in Model Organisms","score":0.9901999831199646,"subfield":{"id":"https://openalex.org/subfields/1302","display_name":"Aging"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6441468000411987},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5401010513305664},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.5061282515525818},{"id":"https://openalex.org/keywords/connectome","display_name":"Connectome","score":0.4961033761501312},{"id":"https://openalex.org/keywords/neural-ensemble","display_name":"Neural ensemble","score":0.4474843442440033},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3780980110168457},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.33973586559295654},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.32613497972488403},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1390070617198944},{"id":"https://openalex.org/keywords/functional-connectivity","display_name":"Functional connectivity","score":0.11378270387649536}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6441468000411987},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5401010513305664},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.5061282515525818},{"id":"https://openalex.org/C45715564","wikidata":"https://www.wikidata.org/wiki/Q1292103","display_name":"Connectome","level":3,"score":0.4961033761501312},{"id":"https://openalex.org/C187782996","wikidata":"https://www.wikidata.org/wiki/Q9390548","display_name":"Neural ensemble","level":2,"score":0.4474843442440033},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3780980110168457},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.33973586559295654},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.32613497972488403},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1390070617198944},{"id":"https://openalex.org/C3018011982","wikidata":"https://www.wikidata.org/wiki/Q7316120","display_name":"Functional connectivity","level":2,"score":0.11378270387649536}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":false},{"descriptor_ui":"D008959","descriptor_name":"Models, Neurological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008959","descriptor_name":"Models, Neurological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008959","descriptor_name":"Models, Neurological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009424","descriptor_name":"Nervous System Physiological Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009424","descriptor_name":"Nervous System Physiological Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009424","descriptor_name":"Nervous System Physiological Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D017629","descriptor_name":"Gap Junctions","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D017629","descriptor_name":"Gap Junctions","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D017629","descriptor_name":"Gap Junctions","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D059906","descriptor_name":"Neuroimaging","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059906","descriptor_name":"Neuroimaging","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059906","descriptor_name":"Neuroimaging","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1371/journal.pcbi.1011848","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1011848","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1011848&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:38489379","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38489379","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10942262","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10942262","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10942262/pdf/pcbi.1011848.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:dd2a35b0551c4932806e42ca2b9338b5","is_oa":false,"landing_page_url":"https://doaj.org/article/dd2a35b0551c4932806e42ca2b9338b5","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 20, Iss 3, p e1011848 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1011848","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1011848","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1011848&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1366287151","display_name":null,"funder_award_id":"JPMJCR12W1, JPMJCR22N4","funder_id":"https://openalex.org/F4320334789","funder_display_name":"Japan Science and Technology Agency"},{"id":"https://openalex.org/G1629447743","display_name":null,"funder_award_id":"21K15182","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G378548375","display_name":null,"funder_award_id":"26830006, 18K14848, 16H01418, 18H04728, 17H05970 and 19H04928).","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G5991217219","display_name":null,"funder_award_id":"JPMJPR1947","funder_id":"https://openalex.org/F4320320907","funder_display_name":"Japan Science and Technology Corporation"},{"id":"https://openalex.org/G6555461188","display_name":null,"funder_award_id":"20115003, 25115009, 18H05135, 24650167, 19H03326, 17H06113 and 16H0654),","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G7170362992","display_name":null,"funder_award_id":"17H06113, 22H00416, 20K21805, 25115009 and 19H04980","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G8689899714","display_name":null,"funder_award_id":"7700000461","funder_id":"https://openalex.org/F4320320907","funder_display_name":"Japan Science and Technology Corporation"}],"funders":[{"id":"https://openalex.org/F4320320907","display_name":"Japan Science and Technology Corporation","ror":"https://ror.org/00097mb19"},{"id":"https://openalex.org/F4320322832","display_name":"University of Tokyo","ror":"https://ror.org/057zh3y96"},{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"},{"id":"https://openalex.org/F4320334789","display_name":"Japan Science and Technology Agency","ror":"https://ror.org/00097mb19"},{"id":"https://openalex.org/F4320336716","display_name":"Institute of Medical Science, University of Tokyo","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4392862201.pdf","grobid_xml":"https://content.openalex.org/works/W4392862201.grobid-xml"},"referenced_works_count":53,"referenced_works":["https://openalex.org/W1513082520","https://openalex.org/W1835035414","https://openalex.org/W1868105705","https://openalex.org/W1966089218","https://openalex.org/W1975389666","https://openalex.org/W1985042306","https://openalex.org/W1998367480","https://openalex.org/W2031012150","https://openalex.org/W2036163871","https://openalex.org/W2038365303","https://openalex.org/W2078683173","https://openalex.org/W2084771878","https://openalex.org/W2101548969","https://openalex.org/W2112274848","https://openalex.org/W2118772666","https://openalex.org/W2133287637","https://openalex.org/W2157801062","https://openalex.org/W2160333357","https://openalex.org/W2160938187","https://openalex.org/W2168112956","https://openalex.org/W2173362524","https://openalex.org/W2187089797","https://openalex.org/W2213258834","https://openalex.org/W2216967354","https://openalex.org/W2220010338","https://openalex.org/W2286762917","https://openalex.org/W2418870703","https://openalex.org/W2514958760","https://openalex.org/W2547071550","https://openalex.org/W2590144118","https://openalex.org/W2655812336","https://openalex.org/W2785193454","https://openalex.org/W2954731284","https://openalex.org/W3000696985","https://openalex.org/W3004699224","https://openalex.org/W3011821508","https://openalex.org/W3091827300","https://openalex.org/W3129877228","https://openalex.org/W3156888814","https://openalex.org/W3164845000","https://openalex.org/W3183816139","https://openalex.org/W3192789395","https://openalex.org/W3197078253","https://openalex.org/W3199707790","https://openalex.org/W3206987569","https://openalex.org/W3214251916","https://openalex.org/W4213093937","https://openalex.org/W4226253482","https://openalex.org/W4284970310","https://openalex.org/W4290803037","https://openalex.org/W4376602753","https://openalex.org/W4388126567","https://openalex.org/W6800928281"],"related_works":["https://openalex.org/W2043847720","https://openalex.org/W4312963348","https://openalex.org/W3019511099","https://openalex.org/W3048234683","https://openalex.org/W1744057168","https://openalex.org/W2962960039","https://openalex.org/W3180551345","https://openalex.org/W4287102215","https://openalex.org/W4380291026","https://openalex.org/W2286126108"],"abstract_inverted_index":{"The":[0],"recent":[1],"advancements":[2],"in":[3,18,177,187,204,243],"large-scale":[4],"activity":[5,21],"imaging":[6,61],"of":[7,65,68,91,97,141,162,219],"neuronal":[8,32,107],"ensembles":[9],"offer":[10],"valuable":[11],"opportunities":[12],"to":[13,57],"comprehend":[14],"the":[15,39,69,78,95,149,159,170,178,188,205,210,231],"process":[16],"involved":[17],"generating":[19,194],"brain":[20],"patterns":[22],"and":[23,156,217],"understanding":[24,240],"how":[25],"information":[26,241],"is":[27,191],"transmitted":[28],"between":[29,131],"neurons":[30,67],"or":[31],"ensembles.":[33],"However,":[34],"existing":[35],"methodologies":[36,56],"for":[37,193,239],"extracting":[38],"underlying":[40],"properties":[41,203],"that":[42,109,185],"generate":[43],"overall":[44,160],"dynamics":[45,105,174],"are":[46],"still":[47],"limited.":[48],"In":[49],"this":[50,168],"study,":[51],"we":[52,82,102],"applied":[53],"previously":[54],"unexplored":[55],"analyze":[58],"time-lapse":[59],"3D":[60],"(4D":[62],"imaging)":[63],"data":[64],"head":[66],"nematode":[70],"Caenorhabditis":[71],"elegans.":[72],"By":[73,144,167],"combining":[74,145],"time-delay":[75],"embedding":[76],"with":[77],"independent":[79],"component":[80,92,126],"analysis,":[81],"successfully":[83],"decomposed":[84],"whole-brain":[85,180,196],"activities":[86,108,164],"into":[87],"a":[88,236],"small":[89],"number":[90],"dynamics.":[93,197],"Through":[94],"integration":[96],"results":[98],"from":[99,106],"multiple":[100],"samples,":[101,124],"extracted":[103],"common":[104,121],"exhibit":[110],"apparent":[111],"divergence":[112],"across":[113,123],"different":[114],"animals.":[115],"Notably,":[116],"while":[117],"several":[118],"components":[119],"show":[120],"cooperativity":[122],"some":[125],"pairs":[127],"exhibited":[128],"distinct":[129],"relationships":[130,161],"individual":[132],"samples.":[133],"We":[134,183],"further":[135],"developed":[136],"time":[137],"series":[138],"prediction":[139],"models":[140],"synaptic":[142,201],"communications.":[143],"dimension":[146,154],"reduction":[147],"using":[148,230],"general":[150],"framework,":[151],"gradient":[152],"kernel":[153],"reduction,":[155],"probabilistic":[157],"modeling,":[158],"neural":[163,181,212,245],"were":[165,175,222],"incorporated.":[166],"approach,":[169],"stochastic":[171],"but":[172],"coordinated":[173],"reproduced":[176],"simulated":[179],"network.":[182],"found":[184],"noise":[186],"nervous":[189],"system":[190],"crucial":[192],"realistic":[195],"Furthermore,":[198],"by":[199],"evaluating":[200],"interaction":[202],"models,":[206],"strong":[207],"interactions":[208],"within":[209],"core":[211],"circuit,":[213],"variable":[214],"sensory":[215],"transmission":[216],"importance":[218],"gap":[220],"junctions":[221],"inferred.":[223],"Virtual":[224],"optogenetics":[225],"can":[226],"be":[227],"also":[228],"performed":[229],"model.":[232],"These":[233],"analyses":[234],"provide":[235],"solid":[237],"foundation":[238],"flow":[242],"real":[244],"networks.":[246]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2023,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
