{"id":"https://openalex.org/W4390047018","doi":"https://doi.org/10.1371/journal.pcbi.1011689","title":"Ten simple rules for writing a PLOS Computational Biology quick tips article","display_name":"Ten simple rules for writing a PLOS Computational Biology quick tips article","publication_year":2023,"publication_date":"2023-12-21","ids":{"openalex":"https://openalex.org/W4390047018","doi":"https://doi.org/10.1371/journal.pcbi.1011689","pmid":"https://pubmed.ncbi.nlm.nih.gov/38127824"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1011689","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1011689","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1011689&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1011689&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018313256","display_name":"Patricia M. Palagi","orcid":"https://orcid.org/0000-0001-9062-6303"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Patricia M. Palagi","raw_affiliation_strings":["SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland"],"affiliations":[{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051953313","display_name":"Russell Schwartz","orcid":"https://orcid.org/0000-0002-4970-2252"},"institutions":[{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Russell Schwartz","raw_affiliation_strings":["Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America"],"affiliations":[{"raw_affiliation_string":"Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America","institution_ids":["https://openalex.org/I74973139"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061373587","display_name":"Scott Markel","orcid":"https://orcid.org/0000-0003-1488-9042"},"institutions":[{"id":"https://openalex.org/I4210131673","display_name":"Dassault Syst\u00e8mes (United States)","ror":"https://ror.org/03fbqtm75","country_code":"US","type":"company","lineage":["https://openalex.org/I4210131673","https://openalex.org/I47431100"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Scott Markel","raw_affiliation_strings":["Dassault Systemes BIOVIA, San Diego, California, United States of America"],"affiliations":[{"raw_affiliation_string":"Dassault Systemes BIOVIA, San Diego, California, United States of America","institution_ids":["https://openalex.org/I4210131673"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5026853900","display_name":"B. F. Francis Ouellette","orcid":"https://orcid.org/0000-0003-4676-675X"},"institutions":[{"id":"https://openalex.org/I4210109217","display_name":"Bioinformatics Solutions (Canada)","ror":"https://ror.org/01jzb6k09","country_code":"CA","type":"company","lineage":["https://openalex.org/I4210109217"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"B. F. Francis Ouellette","raw_affiliation_strings":["Bioinformatics.ca, Montr\u00e9al, Quebec, Canada"],"affiliations":[{"raw_affiliation_string":"Bioinformatics.ca, Montr\u00e9al, Quebec, Canada","institution_ids":["https://openalex.org/I4210109217"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5026853900"],"corresponding_institution_ids":["https://openalex.org/I4210109217"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.33053348,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"19","issue":"12","first_page":"e1011689","last_page":"e1011689"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9854999780654907,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9811999797821045,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/simple","display_name":"Simple (philosophy)","score":0.6902969479560852},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5010156631469727},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4238559901714325},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3363170325756073},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3225606083869934},{"id":"https://openalex.org/keywords/epistemology","display_name":"Epistemology","score":0.08731949329376221}],"concepts":[{"id":"https://openalex.org/C2780586882","wikidata":"https://www.wikidata.org/wiki/Q7520643","display_name":"Simple (philosophy)","level":2,"score":0.6902969479560852},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5010156631469727},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4238559901714325},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3363170325756073},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3225606083869934},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.08731949329376221},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D014956","descriptor_name":"Writing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014956","descriptor_name":"Writing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014956","descriptor_name":"Writing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014956","descriptor_name":"Writing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1371/journal.pcbi.1011689","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1011689","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1011689&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:38127824","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38127824","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10734976","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10734976","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10734976/pdf/pcbi.1011689.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"},{"id":"pmh:oai:RePEc:plo:pcbi00:1011689","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1011689","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:35b88e6e8b0b4c9f9278b878f36b9107","is_oa":true,"landing_page_url":"https://doaj.org/article/35b88e6e8b0b4c9f9278b878f36b9107","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 19, Iss 12, p e1011689 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1011689","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1011689","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1011689&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.8299999833106995,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4390047018.pdf","grobid_xml":"https://content.openalex.org/works/W4390047018.grobid-xml"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W1984314602","https://openalex.org/W1993760308","https://openalex.org/W2019698558","https://openalex.org/W2034921036","https://openalex.org/W2043985305","https://openalex.org/W2046480178","https://openalex.org/W2069273833","https://openalex.org/W2074446818","https://openalex.org/W2106299358","https://openalex.org/W2111060111","https://openalex.org/W2807325238","https://openalex.org/W2906609414","https://openalex.org/W2940293958","https://openalex.org/W2994742268","https://openalex.org/W3162004913","https://openalex.org/W4220895458","https://openalex.org/W4252183234","https://openalex.org/W4302583945","https://openalex.org/W4305057923","https://openalex.org/W4312091690"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W2151865869","https://openalex.org/W2117258802"],"abstract_inverted_index":{"At":[0],"that":[1],"time,":[2],"the":[3,18,24],"change":[4],"in":[5,31,43,70,81],"how":[6],"we":[7],"communicate":[8],"sciences":[9],"had":[10],"already":[11],"begun":[12],"[2]:":[13],"social":[14],"media":[15],"was":[16,21,29],"blooming,":[17],"information":[19,28],"deluge":[20],"ongoing,":[22],"and":[23,54,77,84,92],"fear":[25],"of":[26,33],"missing":[27],"anchored":[30],"each":[32],"us.":[34],"The":[35,64],"Ten":[36],"Simple":[37],"Rules":[38],"collection":[39],"filled":[40],"a":[41,61,82,89,93],"space":[42],"scientific":[44,71,94],"publications":[45],"where":[46],"researchers":[47],"eager":[48],"to":[49],"share":[50],"their":[51],"experiences,":[52],"wisdom,":[53],"doubts":[55],"could":[56],"quickly":[57],"do":[58],"it":[59],"using":[60],"colloquial":[62],"narrative.":[63],"topics":[65],"covered":[66],"were":[67],"broad":[68],"themes":[69],"practice,":[72],"such":[73],"as":[74],"soft":[75],"skills":[76],"career":[78],"development,":[79],"captured":[80],"concise":[83],"quick-to-read":[85],"format,":[86],"something":[87],"between":[88],"blog":[90],"post":[91],"article.":[95]},"counts_by_year":[],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}