{"id":"https://openalex.org/W4388822256","doi":"https://doi.org/10.1371/journal.pcbi.1011627","title":"Imaging with spatio-temporal modelling to characterize the dynamics of plant-pathogen lesions","display_name":"Imaging with spatio-temporal modelling to characterize the dynamics of plant-pathogen lesions","publication_year":2023,"publication_date":"2023-11-20","ids":{"openalex":"https://openalex.org/W4388822256","doi":"https://doi.org/10.1371/journal.pcbi.1011627","pmid":"https://pubmed.ncbi.nlm.nih.gov/37983276"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1011627","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1011627","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1371/journal.pcbi.1011627","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050380470","display_name":"Melen Leclerc","orcid":"https://orcid.org/0000-0002-5314-461X"},"institutions":[{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210141755","display_name":"Institut de G\u00e9n\u00e9tique, Environnement et Protection des Plantes","ror":"https://ror.org/038kxsm48","country_code":"FR","type":"facility","lineage":["https://openalex.org/I2800285241","https://openalex.org/I4210088668","https://openalex.org/I4210117091","https://openalex.org/I4210141755","https://openalex.org/I4399657933","https://openalex.org/I56067802"]},{"id":"https://openalex.org/I56067802","display_name":"Universit\u00e9 de Rennes","ror":"https://ror.org/015m7wh34","country_code":"FR","type":"education","lineage":["https://openalex.org/I56067802"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Melen Leclerc","raw_affiliation_strings":["IGEPP, INRAE, Institut Agro, University of Rennes, Rennes, France","IGEPP - Institut de G\u00e9n\u00e9tique, Environnement et Protection des Plantes (Domaine de la Motte au Vicomte BP 35327\r\n35653 Le Rheu - France)"],"raw_orcid":"https://orcid.org/0000-0002-5314-461X","affiliations":[{"raw_affiliation_string":"IGEPP, INRAE, Institut Agro, University of Rennes, Rennes, France","institution_ids":["https://openalex.org/I4210141755","https://openalex.org/I56067802","https://openalex.org/I4210088668"]},{"raw_affiliation_string":"IGEPP - Institut de G\u00e9n\u00e9tique, Environnement et Protection des Plantes (Domaine de la Motte au Vicomte BP 35327\r\n35653 Le Rheu - France)","institution_ids":["https://openalex.org/I4210141755"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080811047","display_name":"St\u00e9phane Jumel","orcid":null},"institutions":[{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210141755","display_name":"Institut de G\u00e9n\u00e9tique, Environnement et Protection des Plantes","ror":"https://ror.org/038kxsm48","country_code":"FR","type":"facility","lineage":["https://openalex.org/I2800285241","https://openalex.org/I4210088668","https://openalex.org/I4210117091","https://openalex.org/I4210141755","https://openalex.org/I4399657933","https://openalex.org/I56067802"]},{"id":"https://openalex.org/I56067802","display_name":"Universit\u00e9 de Rennes","ror":"https://ror.org/015m7wh34","country_code":"FR","type":"education","lineage":["https://openalex.org/I56067802"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"St\u00e9phane Jumel","raw_affiliation_strings":["IGEPP, INRAE, Institut Agro, University of Rennes, Rennes, France","IGEPP - Institut de G\u00e9n\u00e9tique, Environnement et Protection des Plantes (Domaine de la Motte au Vicomte BP 35327\r\n35653 Le Rheu - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IGEPP, INRAE, Institut Agro, University of Rennes, Rennes, France","institution_ids":["https://openalex.org/I4210141755","https://openalex.org/I56067802","https://openalex.org/I4210088668"]},{"raw_affiliation_string":"IGEPP - Institut de G\u00e9n\u00e9tique, Environnement et Protection des Plantes (Domaine de la Motte au Vicomte BP 35327\r\n35653 Le Rheu - France)","institution_ids":["https://openalex.org/I4210141755"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022419485","display_name":"Fr\u00e9d\u00e9ric Hamelin","orcid":"https://orcid.org/0000-0003-2653-699X"},"institutions":[{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210141755","display_name":"Institut de G\u00e9n\u00e9tique, Environnement et Protection des Plantes","ror":"https://ror.org/038kxsm48","country_code":"FR","type":"facility","lineage":["https://openalex.org/I2800285241","https://openalex.org/I4210088668","https://openalex.org/I4210117091","https://openalex.org/I4210141755","https://openalex.org/I4399657933","https://openalex.org/I56067802"]},{"id":"https://openalex.org/I56067802","display_name":"Universit\u00e9 de Rennes","ror":"https://ror.org/015m7wh34","country_code":"FR","type":"education","lineage":["https://openalex.org/I56067802"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Fr\u00e9d\u00e9ric M. Hamelin","raw_affiliation_strings":["IGEPP, INRAE, Institut Agro, University of Rennes, Rennes, France","IGEPP - Institut de G\u00e9n\u00e9tique, Environnement et Protection des Plantes (Domaine de la Motte au Vicomte BP 35327\r\n35653 Le Rheu - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IGEPP, INRAE, Institut Agro, University of Rennes, Rennes, France","institution_ids":["https://openalex.org/I4210141755","https://openalex.org/I56067802","https://openalex.org/I4210088668"]},{"raw_affiliation_string":"IGEPP - Institut de G\u00e9n\u00e9tique, Environnement et Protection des Plantes (Domaine de la Motte au Vicomte BP 35327\r\n35653 Le Rheu - France)","institution_ids":["https://openalex.org/I4210141755"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027503210","display_name":"R\u00e9mi Treilhaud","orcid":null},"institutions":[{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210141755","display_name":"Institut de G\u00e9n\u00e9tique, Environnement et Protection des Plantes","ror":"https://ror.org/038kxsm48","country_code":"FR","type":"facility","lineage":["https://openalex.org/I2800285241","https://openalex.org/I4210088668","https://openalex.org/I4210117091","https://openalex.org/I4210141755","https://openalex.org/I4399657933","https://openalex.org/I56067802"]},{"id":"https://openalex.org/I56067802","display_name":"Universit\u00e9 de Rennes","ror":"https://ror.org/015m7wh34","country_code":"FR","type":"education","lineage":["https://openalex.org/I56067802"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"R\u00e9mi Treilhaud","raw_affiliation_strings":["IGEPP, INRAE, Institut Agro, University of Rennes, Rennes, France","IGEPP - Institut de G\u00e9n\u00e9tique, Environnement et Protection des Plantes (Domaine de la Motte au Vicomte BP 35327\r\n35653 Le Rheu - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IGEPP, INRAE, Institut Agro, University of Rennes, Rennes, France","institution_ids":["https://openalex.org/I4210141755","https://openalex.org/I56067802","https://openalex.org/I4210088668"]},{"raw_affiliation_string":"IGEPP - Institut de G\u00e9n\u00e9tique, Environnement et Protection des Plantes (Domaine de la Motte au Vicomte BP 35327\r\n35653 Le Rheu - France)","institution_ids":["https://openalex.org/I4210141755"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032353230","display_name":"Nicolas Parisey","orcid":"https://orcid.org/0000-0003-2439-3809"},"institutions":[{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210141755","display_name":"Institut de G\u00e9n\u00e9tique, Environnement et Protection des Plantes","ror":"https://ror.org/038kxsm48","country_code":"FR","type":"facility","lineage":["https://openalex.org/I2800285241","https://openalex.org/I4210088668","https://openalex.org/I4210117091","https://openalex.org/I4210141755","https://openalex.org/I4399657933","https://openalex.org/I56067802"]},{"id":"https://openalex.org/I56067802","display_name":"Universit\u00e9 de Rennes","ror":"https://ror.org/015m7wh34","country_code":"FR","type":"education","lineage":["https://openalex.org/I56067802"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Nicolas Parisey","raw_affiliation_strings":["IGEPP, INRAE, Institut Agro, University of Rennes, Rennes, France","IGEPP - Institut de G\u00e9n\u00e9tique, Environnement et Protection des Plantes (Domaine de la Motte au Vicomte BP 35327\r\n35653 Le Rheu - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IGEPP, INRAE, Institut Agro, University of Rennes, Rennes, France","institution_ids":["https://openalex.org/I4210141755","https://openalex.org/I56067802","https://openalex.org/I4210088668"]},{"raw_affiliation_string":"IGEPP - Institut de G\u00e9n\u00e9tique, Environnement et Protection des Plantes (Domaine de la Motte au Vicomte BP 35327\r\n35653 Le Rheu - France)","institution_ids":["https://openalex.org/I4210141755"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060488810","display_name":"Youcef Mammeri","orcid":"https://orcid.org/0000-0002-7200-4014"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210104796","display_name":"Institut Camille Jordan","ror":"https://ror.org/01ekw7f87","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I112936343","https://openalex.org/I1294671590","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I4210104796","https://openalex.org/I4405259976","https://openalex.org/I48430043"]},{"id":"https://openalex.org/I86767153","display_name":"Universit\u00e9 Jean Monnet","ror":"https://ror.org/04yznqr36","country_code":"FR","type":"education","lineage":["https://openalex.org/I86767153"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Youcef Mammeri","raw_affiliation_strings":["ICJ, CNRS, Jean Monnet University, Saint-Etienne, France","ICJ - Institut Camille Jordan (B\u00e2t. Jean Braconnier 43 bd du 11 novembre 1918 69622 VILLEURBANNE CEDEX - France)","MMCS - Mod\u00e9lisation math\u00e9matique, calcul scientifique (Institut Camille Jordan\r\nVilleurbane - France)","UJM - Universit\u00e9 Jean Monnet - Saint-\u00c9tienne (10, Rue Tr\u00e9filerie \u2013 CS 82301\r\n42023 Saint-\u00c9tienne Cedex 2 - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ICJ, CNRS, Jean Monnet University, Saint-Etienne, France","institution_ids":["https://openalex.org/I86767153","https://openalex.org/I4210104796","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"ICJ - Institut Camille Jordan (B\u00e2t. Jean Braconnier 43 bd du 11 novembre 1918 69622 VILLEURBANNE CEDEX - France)","institution_ids":["https://openalex.org/I4210104796"]},{"raw_affiliation_string":"MMCS - Mod\u00e9lisation math\u00e9matique, calcul scientifique (Institut Camille Jordan\r\nVilleurbane - France)","institution_ids":["https://openalex.org/I4210104796"]},{"raw_affiliation_string":"UJM - Universit\u00e9 Jean Monnet - Saint-\u00c9tienne (10, Rue Tr\u00e9filerie \u2013 CS 82301\r\n42023 Saint-\u00c9tienne Cedex 2 - France)","institution_ids":["https://openalex.org/I86767153"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":3.1155,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.92245711,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"19","issue":"11","first_page":"e1011627","last_page":"e1011627"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10733","display_name":"Wheat and Barley Genetics and Pathology","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10494","display_name":"Plant Virus Research Studies","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6387239098548889},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.5816198587417603},{"id":"https://openalex.org/keywords/host","display_name":"Host (biology)","score":0.569273054599762},{"id":"https://openalex.org/keywords/pathogen","display_name":"Pathogen","score":0.5479259490966797},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4322042763233185},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.40812447667121887},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.3750396966934204},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3455759584903717},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.19903403520584106}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6387239098548889},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.5816198587417603},{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.569273054599762},{"id":"https://openalex.org/C2776460866","wikidata":"https://www.wikidata.org/wiki/Q170065","display_name":"Pathogen","level":2,"score":0.5479259490966797},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4322042763233185},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.40812447667121887},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.3750396966934204},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3455759584903717},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.19903403520584106}],"mesh":[{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010935","descriptor_name":"Plant Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010935","descriptor_name":"Plant Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010935","descriptor_name":"Plant Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010935","descriptor_name":"Plant Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1371/journal.pcbi.1011627","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1011627","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:37983276","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37983276","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:HAL:hal-04312350v1","is_oa":true,"landing_page_url":"https://hal.science/hal-04312350","pdf_url":"https://hal.science/hal-04312350/document","source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 1553-734X","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:10695395","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10695395","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10695395/pdf/pcbi.1011627.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:65c9be43c3484fe1bd5800c7c4eb909d","is_oa":true,"landing_page_url":"https://doaj.org/article/65c9be43c3484fe1bd5800c7c4eb909d","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 19, Iss 11, p e1011627 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1011627","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1011627","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.6700000166893005}],"awards":[],"funders":[{"id":"https://openalex.org/F4320319774","display_name":"Universit\u00e9 Bretagne Loire","ror":null},{"id":"https://openalex.org/F4320331560","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":56,"referenced_works":["https://openalex.org/W1238092070","https://openalex.org/W1483231869","https://openalex.org/W1967808329","https://openalex.org/W1970470419","https://openalex.org/W1973078437","https://openalex.org/W1985706996","https://openalex.org/W1997402508","https://openalex.org/W2004518184","https://openalex.org/W2011392738","https://openalex.org/W2045261785","https://openalex.org/W2048123557","https://openalex.org/W2056346357","https://openalex.org/W2056352877","https://openalex.org/W2058354188","https://openalex.org/W2065178079","https://openalex.org/W2065462976","https://openalex.org/W2068679831","https://openalex.org/W2074862548","https://openalex.org/W2093769588","https://openalex.org/W2098059215","https://openalex.org/W2099832050","https://openalex.org/W2103959917","https://openalex.org/W2110129438","https://openalex.org/W2112577524","https://openalex.org/W2117924371","https://openalex.org/W2134236847","https://openalex.org/W2135558784","https://openalex.org/W2135746102","https://openalex.org/W2142097792","https://openalex.org/W2155203709","https://openalex.org/W2173520478","https://openalex.org/W2300593175","https://openalex.org/W2406345912","https://openalex.org/W2601810315","https://openalex.org/W2614600165","https://openalex.org/W2743278584","https://openalex.org/W2913520087","https://openalex.org/W2950483507","https://openalex.org/W2952528518","https://openalex.org/W2970933665","https://openalex.org/W2976848213","https://openalex.org/W2977736300","https://openalex.org/W3012526827","https://openalex.org/W3013401886","https://openalex.org/W3033630333","https://openalex.org/W3135826229","https://openalex.org/W3157327775","https://openalex.org/W3169407029","https://openalex.org/W3216420763","https://openalex.org/W4230684562","https://openalex.org/W4231556171","https://openalex.org/W4231678679","https://openalex.org/W4233734028","https://openalex.org/W4313420555","https://openalex.org/W6917437408","https://openalex.org/W6936527010"],"related_works":["https://openalex.org/W2157598224","https://openalex.org/W2478842321","https://openalex.org/W2117112636","https://openalex.org/W2001981265","https://openalex.org/W2091398531","https://openalex.org/W2343234619","https://openalex.org/W3173815060","https://openalex.org/W4393700755","https://openalex.org/W4393655603","https://openalex.org/W4286497165"],"abstract_inverted_index":{"Within-host":[0],"spread":[1,48,78,112,133],"of":[2,11,17,49,101,113,124,178],"pathogens":[3],"is":[4,107,139],"an":[5,86,114],"important":[6],"process":[7],"for":[8],"the":[9,15,26,47,73,111,130,135],"study":[10,149],"plant-pathogen":[12,18],"interactions.":[13],"However,":[14],"development":[16,172],"lesions":[19],"remains":[20],"practically":[21],"difficult":[22],"to":[23,109,142,162],"characterize":[24],"beyond":[25],"common":[27],"traits":[28,180],"such":[29],"as":[30],"lesion":[31,77],"area.":[32],"Here,":[33],"we":[34],"address":[35],"this":[36],"question":[37],"by":[38,72],"combining":[39,152],"image-based":[40],"phenotyping":[41],"with":[42,59,121,154],"mathematical":[43],"modelling.":[44],"We":[45,62,127],"consider":[46],"Peyronellaea":[50],"pinodes":[51],"on":[52,67,80,99,117,134],"pea":[53,119],"stipules":[54],"that":[55,64,129,151],"were":[56],"monitored":[57],"daily":[58],"visible":[60],"imaging.":[61],"assume":[63],"pathogen":[65],"propagation":[66],"host-tissues":[68],"can":[69,158],"be":[70],"described":[71],"Fisher-KPP":[74],"model":[75],"where":[76],"depends":[79],"both":[81],"a":[82,94,143,160,175],"logistic":[83],"growth":[84],"and":[85,170,185],"homogeneous":[87],"diffusion.":[88],"Model":[89],"parameters":[90],"are":[91],"estimated":[92],"using":[93],"variational":[95],"data":[96],"assimilation":[97],"approach":[98],"sets":[100],"registered":[102],"images.":[103],"This":[104,148],"modelling":[105],"framework":[106],"used":[108,182],"compare":[110],"aggressive":[115],"isolate":[116],"two":[118],"cultivars":[120],"contrasted":[122],"levels":[123],"partial":[125],"resistance.":[126],"show":[128],"expected":[131],"slower":[132],"most":[136],"resistant":[137],"cultivar":[138],"actually":[140],"due":[141],"significantly":[144],"lower":[145],"diffusion":[146],"coefficient.":[147],"shows":[150],"imaging":[153],"spatial":[155],"mechanistic":[156],"models":[157],"offer":[159],"mean":[161],"disentangle":[163],"some":[164],"processes":[165],"involved":[166],"in":[167,183],"host-pathogen":[168],"interactions":[169],"further":[171],"may":[173],"allow":[174],"better":[176],"identification":[177],"quantitative":[179],"thereafter":[181],"genetics":[184],"ecological":[186],"studies.":[187]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":4}],"updated_date":"2026-06-25T08:15:23.626066","created_date":"2025-10-10T00:00:00"}
