{"id":"https://openalex.org/W4388651538","doi":"https://doi.org/10.1371/journal.pcbi.1011597","title":"A general hypergraph learning algorithm for drug multi-task predictions in micro-to-macro biomedical networks","display_name":"A general hypergraph learning algorithm for drug multi-task predictions in micro-to-macro biomedical networks","publication_year":2023,"publication_date":"2023-11-13","ids":{"openalex":"https://openalex.org/W4388651538","doi":"https://doi.org/10.1371/journal.pcbi.1011597","pmid":"https://pubmed.ncbi.nlm.nih.gov/37956212"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1011597","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1011597","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1371/journal.pcbi.1011597","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5015486123","display_name":"Shuting Jin","orcid":"https://orcid.org/0000-0002-8113-9367"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]},{"id":"https://openalex.org/I43922553","display_name":"Wuhan University of Science and Technology","ror":"https://ror.org/00e4hrk88","country_code":"CN","type":"education","lineage":["https://openalex.org/I43922553"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Shuting Jin","raw_affiliation_strings":["Department of AIDD, Shanghai Yuyao Biotechnology Co., Ltd., Shanghai, China","School of Computer Science and Technology, Wuhan University of Science and Technology, Wuhan, China","School of Informatics, Xiamen University, Xiamen, China"],"affiliations":[{"raw_affiliation_string":"Department of AIDD, Shanghai Yuyao Biotechnology Co., Ltd., Shanghai, China","institution_ids":[]},{"raw_affiliation_string":"School of Computer Science and Technology, Wuhan University of Science and Technology, Wuhan, China","institution_ids":["https://openalex.org/I43922553"]},{"raw_affiliation_string":"School of Informatics, Xiamen University, Xiamen, China","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059893133","display_name":"Hong Yue","orcid":"https://orcid.org/0000-0003-2072-6223"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yue Hong","raw_affiliation_strings":["School of Informatics, Xiamen University, Xiamen, China"],"affiliations":[{"raw_affiliation_string":"School of Informatics, Xiamen University, Xiamen, China","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048730266","display_name":"Zeng Li","orcid":"https://orcid.org/0000-0002-4501-4102"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Li Zeng","raw_affiliation_strings":["Department of AIDD, Shanghai Yuyao Biotechnology Co., Ltd., Shanghai, China"],"affiliations":[{"raw_affiliation_string":"Department of AIDD, Shanghai Yuyao Biotechnology Co., Ltd., Shanghai, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045247136","display_name":"Yinghui Jiang","orcid":null},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yinghui Jiang","raw_affiliation_strings":["School of Informatics, Xiamen University, Xiamen, China"],"affiliations":[{"raw_affiliation_string":"School of Informatics, Xiamen University, Xiamen, China","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101486583","display_name":"Lin Yuan","orcid":"https://orcid.org/0000-0002-8148-9770"},"institutions":[{"id":"https://openalex.org/I2800207870","display_name":"H\u00f8yskolen Kristiania","ror":"https://ror.org/03gss5916","country_code":"NO","type":"education","lineage":["https://openalex.org/I2800207870"]}],"countries":["NO"],"is_corresponding":true,"raw_author_name":"Yuan Lin","raw_affiliation_strings":["School of Economics, Innovation, and Technology, Kristiania University College, Bergen, Norway"],"affiliations":[{"raw_affiliation_string":"School of Economics, Innovation, and Technology, Kristiania University College, Bergen, Norway","institution_ids":["https://openalex.org/I2800207870"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033232360","display_name":"Leyi Wei","orcid":"https://orcid.org/0000-0003-1444-190X"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Leyi Wei","raw_affiliation_strings":["School of Software, Shandong University, Shandong, China"],"affiliations":[{"raw_affiliation_string":"School of Software, Shandong University, Shandong, China","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089542096","display_name":"Zhuohang Yu","orcid":"https://orcid.org/0009-0001-0840-681X"},"institutions":[{"id":"https://openalex.org/I143593769","display_name":"East China University of Science and Technology","ror":"https://ror.org/01vyrm377","country_code":"CN","type":"education","lineage":["https://openalex.org/I143593769"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zhuohang Yu","raw_affiliation_strings":["Shanghai Frontiers Science Center of Optogenetic Techniques for Cell Metabolism, School of Pharmacy, East China University of Science and Technology, Shanghai, China"],"affiliations":[{"raw_affiliation_string":"Shanghai Frontiers Science Center of Optogenetic Techniques for Cell Metabolism, School of Pharmacy, East China University of Science and Technology, Shanghai, China","institution_ids":["https://openalex.org/I143593769"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027286013","display_name":"Xiangxiang Zeng","orcid":"https://orcid.org/0000-0001-6201-0114"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiangxiang Zeng","raw_affiliation_strings":["School of Information Science and Engineering, Hunan University, Hunan, China"],"affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, Hunan University, Hunan, China","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5026771763","display_name":"Xiangrong Liu","orcid":"https://orcid.org/0000-0001-9885-1978"},"institutions":[{"id":"https://openalex.org/I4210123185","display_name":"Zhejiang Lab","ror":"https://ror.org/02m2h7991","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210123185"]},{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiangrong Liu","raw_affiliation_strings":["School of Informatics, Xiamen University, Xiamen, China","Zhejiang Lab, Hangzhou, China"],"affiliations":[{"raw_affiliation_string":"School of Informatics, Xiamen University, Xiamen, China","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"Zhejiang Lab, Hangzhou, China","institution_ids":["https://openalex.org/I4210123185"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5015486123","https://openalex.org/A5026771763","https://openalex.org/A5027286013","https://openalex.org/A5033232360","https://openalex.org/A5045247136","https://openalex.org/A5048730266","https://openalex.org/A5059893133","https://openalex.org/A5089542096","https://openalex.org/A5101486583"],"corresponding_institution_ids":["https://openalex.org/I143593769","https://openalex.org/I154099455","https://openalex.org/I16609230","https://openalex.org/I191208505","https://openalex.org/I2800207870","https://openalex.org/I4210123185","https://openalex.org/I43922553"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":4.2175,"has_fulltext":true,"cited_by_count":21,"citation_normalized_percentile":{"value":0.95272001,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"19","issue":"11","first_page":"e1011597","last_page":"e1011597"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9713000059127808,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7278150916099548},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.5432286858558655},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5399671792984009},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.527752697467804},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.519878625869751},{"id":"https://openalex.org/keywords/macro","display_name":"Macro","score":0.4930836856365204},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.47389569878578186},{"id":"https://openalex.org/keywords/hypergraph","display_name":"Hypergraph","score":0.4701557159423828},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.4491455852985382},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.42885464429855347},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3291686773300171},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.19126439094543457},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.11014676094055176},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.07693660259246826}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7278150916099548},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.5432286858558655},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5399671792984009},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.527752697467804},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.519878625869751},{"id":"https://openalex.org/C166955791","wikidata":"https://www.wikidata.org/wiki/Q629579","display_name":"Macro","level":2,"score":0.4930836856365204},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.47389569878578186},{"id":"https://openalex.org/C2781221856","wikidata":"https://www.wikidata.org/wiki/Q840247","display_name":"Hypergraph","level":2,"score":0.4701557159423828},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.4491455852985382},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.42885464429855347},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3291686773300171},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.19126439094543457},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.11014676094055176},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.07693660259246826},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C118615104","wikidata":"https://www.wikidata.org/wiki/Q121416","display_name":"Discrete mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016503","descriptor_name":"Drug Delivery Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016503","descriptor_name":"Drug Delivery Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016503","descriptor_name":"Drug Delivery Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016503","descriptor_name":"Drug Delivery Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1371/journal.pcbi.1011597","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1011597","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:37956212","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37956212","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10681315","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10681315","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10681315/pdf/pcbi.1011597.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:6ed5ac3111744e7fa1514fee54e1c1fc","is_oa":true,"landing_page_url":"https://doaj.org/article/6ed5ac3111744e7fa1514fee54e1c1fc","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 19, Iss 11, p e1011597 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1011597","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1011597","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1231421488","display_name":null,"funder_award_id":"under","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5091875258","display_name":null,"funder_award_id":"61872309","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6312213820","display_name":null,"funder_award_id":"62072385","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8390325463","display_name":null,"funder_award_id":"61772441","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8796863259","display_name":null,"funder_award_id":"grant nos. 62072384, 61872309, 62072385, 61772441","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8971624103","display_name":null,"funder_award_id":"62072384","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":73,"referenced_works":["https://openalex.org/W1978884812","https://openalex.org/W1984011277","https://openalex.org/W1986491356","https://openalex.org/W2010341976","https://openalex.org/W2018518196","https://openalex.org/W2022476850","https://openalex.org/W2035488883","https://openalex.org/W2052399749","https://openalex.org/W2086302028","https://openalex.org/W2121807289","https://openalex.org/W2133784361","https://openalex.org/W2145578524","https://openalex.org/W2148647134","https://openalex.org/W2153624566","https://openalex.org/W2154054522","https://openalex.org/W2154851992","https://openalex.org/W2155069347","https://openalex.org/W2159583324","https://openalex.org/W2168101256","https://openalex.org/W2169373515","https://openalex.org/W2299863883","https://openalex.org/W2315779791","https://openalex.org/W2567465856","https://openalex.org/W2573312253","https://openalex.org/W2612436700","https://openalex.org/W2753953057","https://openalex.org/W2787879486","https://openalex.org/W2892880750","https://openalex.org/W2945027804","https://openalex.org/W2946099214","https://openalex.org/W2952522777","https://openalex.org/W2956769762","https://openalex.org/W2977707586","https://openalex.org/W3035748723","https://openalex.org/W3040062994","https://openalex.org/W3085990079","https://openalex.org/W3093030756","https://openalex.org/W3094497296","https://openalex.org/W3104097132","https://openalex.org/W3104355095","https://openalex.org/W3106008498","https://openalex.org/W3108458441","https://openalex.org/W3109916301","https://openalex.org/W3113831423","https://openalex.org/W3125730391","https://openalex.org/W3155496675","https://openalex.org/W3156650687","https://openalex.org/W3161129223","https://openalex.org/W3167993868","https://openalex.org/W3174291985","https://openalex.org/W3174753721","https://openalex.org/W3183020242","https://openalex.org/W3187647935","https://openalex.org/W3198205651","https://openalex.org/W3198879735","https://openalex.org/W3212259269","https://openalex.org/W4200140951","https://openalex.org/W4206216434","https://openalex.org/W4206271558","https://openalex.org/W4210442302","https://openalex.org/W4223948920","https://openalex.org/W4224983022","https://openalex.org/W4226112489","https://openalex.org/W4239510810","https://openalex.org/W4281699564","https://openalex.org/W4293214728","https://openalex.org/W4308690706","https://openalex.org/W4360591883","https://openalex.org/W4385288794","https://openalex.org/W4386022694","https://openalex.org/W6755340666","https://openalex.org/W6786266798","https://openalex.org/W7073921942"],"related_works":["https://openalex.org/W4376608589","https://openalex.org/W1537073411","https://openalex.org/W1948107826","https://openalex.org/W3138003926","https://openalex.org/W1630514295","https://openalex.org/W4300037846","https://openalex.org/W4288275998","https://openalex.org/W2963081352","https://openalex.org/W4376608938","https://openalex.org/W2472555608"],"abstract_inverted_index":{"The":[0],"powerful":[1],"combination":[2],"of":[3,18,40,124,165],"large-scale":[4],"drug-related":[5,170],"interaction":[6,65,158],"networks":[7,159],"and":[8,32,76,93,103,112,122,135],"deep":[9],"learning":[10,57,81],"provides":[11],"new":[12],"opportunities":[13],"for":[14,85,169],"accelerating":[15],"the":[16,69,120,125,132,143,149,163],"process":[17],"drug":[19,30,71],"discovery.":[20],"However,":[21],"chemical":[22],"structures":[23],"that":[24,35,137],"play":[25],"an":[26],"important":[27],"role":[28],"in":[29,45],"properties":[31],"high-order":[33],"relations":[34,144],"involve":[36],"a":[37,54,78],"greater":[38],"number":[39],"nodes":[41],"are":[42],"not":[43],"tackled":[44],"current":[46],"biomedical":[47],"networks.":[48],"In":[49,153],"this":[50],"study,":[51],"we":[52],"present":[53],"general":[55],"hypergraph":[56],"framework,":[58],"which":[59],"introduces":[60],"Drug-Substructures":[61],"relationship":[62],"into":[63],"Molecular":[64],"Networks":[66],"to":[67,141],"construct":[68],"micro-to-macro":[70],"centric":[72],"heterogeneous":[73],"network":[74,167],"(DSMN),":[75],"develop":[77],"multi-branches":[79,133],"HyperGraph":[80],"model,":[82],"called":[83],"HGDrug,":[84],"Drug":[86],"multi-task":[87],"predictions.":[88],"HGDrug":[89,126,138],"achieves":[90],"highly":[91],"accurate":[92],"robust":[94],"predictions":[95],"on":[96],"4":[97],"benchmark":[98],"tasks":[99],"(drug-drug,":[100],"drug-target,":[101],"drug-disease,":[102],"drug-side-effect":[104],"interactions),":[105],"outperforming":[106],"8":[107],"state-of-the-art":[108],"task":[109],"specific":[110],"models":[111,168],"6":[113],"general-purpose":[114],"conventional":[115],"models.":[116],"Experiments":[117],"analysis":[118],"verifies":[119],"effectiveness":[121],"rationality":[123],"model":[127],"architecture":[128],"as":[129,131],"well":[130],"setup,":[134],"demonstrates":[136],"is":[139],"able":[140],"capture":[142],"between":[145],"drugs":[146],"associated":[147],"with":[148],"same":[150],"functional":[151],"groups.":[152],"addition,":[154],"our":[155],"proposed":[156],"drug-substructure":[157],"can":[160],"help":[161],"improve":[162],"performance":[164],"existing":[166],"prediction":[171],"tasks.":[172]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":9}],"updated_date":"2026-03-18T14:38:29.013473","created_date":"2025-10-10T00:00:00"}
