{"id":"https://openalex.org/W4387873291","doi":"https://doi.org/10.1371/journal.pcbi.1011566","title":"Rapid automated 3-D pose estimation of larval zebrafish using a physical model-trained neural network","display_name":"Rapid automated 3-D pose estimation of larval zebrafish using a physical model-trained neural network","publication_year":2023,"publication_date":"2023-10-23","ids":{"openalex":"https://openalex.org/W4387873291","doi":"https://doi.org/10.1371/journal.pcbi.1011566","pmid":"https://pubmed.ncbi.nlm.nih.gov/37871114"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1011566","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1011566","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1011566&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1011566&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042955800","display_name":"Aniket Ravan","orcid":null},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Aniket Ravan","raw_affiliation_strings":["Center for Biophysics and Quantitative Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, United States of America","Center for the Physics of Living Cells, University of Illinois at Urbana-Champaign, Urbana, Illinois, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Biophysics and Quantitative Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, United States of America","institution_ids":["https://openalex.org/I157725225"]},{"raw_affiliation_string":"Center for the Physics of Living Cells, University of Illinois at Urbana-Champaign, Urbana, Illinois, United States of America","institution_ids":["https://openalex.org/I157725225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044984947","display_name":"Ruopei Feng","orcid":"https://orcid.org/0000-0002-6184-8991"},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ruopei Feng","raw_affiliation_strings":["Center for the Physics of Living Cells, University of Illinois at Urbana-Champaign, Urbana, Illinois, United States of America","Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, Illinois, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for the Physics of Living Cells, University of Illinois at Urbana-Champaign, Urbana, Illinois, United States of America","institution_ids":["https://openalex.org/I157725225"]},{"raw_affiliation_string":"Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, Illinois, United States of America","institution_ids":["https://openalex.org/I157725225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009810193","display_name":"Martin Gruebele","orcid":"https://orcid.org/0000-0001-9291-8123"},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Martin Gruebele","raw_affiliation_strings":["Center for Biophysics and Quantitative Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, United States of America","Center for the Physics of Living Cells, University of Illinois at Urbana-Champaign, Urbana, Illinois, United States of America","Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, Illinois, United States of America","Department of Physics, University of Illinois at Urbana-Champaign, Urbana, Illinois, United States of America"],"raw_orcid":"https://orcid.org/0000-0001-9291-8123","affiliations":[{"raw_affiliation_string":"Center for Biophysics and Quantitative Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, United States of America","institution_ids":["https://openalex.org/I157725225"]},{"raw_affiliation_string":"Center for the Physics of Living Cells, University of Illinois at Urbana-Champaign, Urbana, Illinois, United States of America","institution_ids":["https://openalex.org/I157725225"]},{"raw_affiliation_string":"Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, Illinois, United States of America","institution_ids":["https://openalex.org/I157725225"]},{"raw_affiliation_string":"Department of Physics, University of Illinois at Urbana-Champaign, Urbana, Illinois, United States of America","institution_ids":["https://openalex.org/I157725225"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068744294","display_name":"Yann R. Chemla","orcid":"https://orcid.org/0000-0001-9167-0234"},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yann R. Chemla","raw_affiliation_strings":["Center for Biophysics and Quantitative Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, United States of America","Center for the Physics of Living Cells, University of Illinois at Urbana-Champaign, Urbana, Illinois, United States of America","Department of Physics, University of Illinois at Urbana-Champaign, Urbana, Illinois, United States of America"],"raw_orcid":"https://orcid.org/0000-0001-9167-0234","affiliations":[{"raw_affiliation_string":"Center for Biophysics and Quantitative Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, United States of America","institution_ids":["https://openalex.org/I157725225"]},{"raw_affiliation_string":"Center for the Physics of Living Cells, University of Illinois at Urbana-Champaign, Urbana, Illinois, United States of America","institution_ids":["https://openalex.org/I157725225"]},{"raw_affiliation_string":"Department of Physics, University of Illinois at Urbana-Champaign, Urbana, Illinois, United States of America","institution_ids":["https://openalex.org/I157725225"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5009810193","https://openalex.org/A5068744294"],"corresponding_institution_ids":["https://openalex.org/I157725225"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":0.7621,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.69406051,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":93,"max":98},"biblio":{"volume":"19","issue":"10","first_page":"e1011566","last_page":"e1011566"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10812","display_name":"Human Pose and Action Recognition","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10812","display_name":"Human Pose and Action Recognition","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11685","display_name":"Zebrafish Biomedical Research Applications","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10531","display_name":"Advanced Vision and Imaging","score":0.9531999826431274,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.7491840124130249},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7284199595451355},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.7107515931129456},{"id":"https://openalex.org/keywords/pose","display_name":"Pose","score":0.6049907207489014},{"id":"https://openalex.org/keywords/ground-truth","display_name":"Ground truth","score":0.5492517948150635},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.5084511041641235},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.43994849920272827},{"id":"https://openalex.org/keywords/a-priori-and-a-posteriori","display_name":"A priori and a posteriori","score":0.435660719871521},{"id":"https://openalex.org/keywords/kinematics","display_name":"Kinematics","score":0.4288506805896759},{"id":"https://openalex.org/keywords/animal-behavior","display_name":"Animal behavior","score":0.42861664295196533},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.4197115898132324},{"id":"https://openalex.org/keywords/ethology","display_name":"Ethology","score":0.4128204882144928},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4105663299560547},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.40745705366134644},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2054109275341034},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.15808916091918945}],"concepts":[{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.7491840124130249},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7284199595451355},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.7107515931129456},{"id":"https://openalex.org/C52102323","wikidata":"https://www.wikidata.org/wiki/Q1671968","display_name":"Pose","level":2,"score":0.6049907207489014},{"id":"https://openalex.org/C146849305","wikidata":"https://www.wikidata.org/wiki/Q370766","display_name":"Ground truth","level":2,"score":0.5492517948150635},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.5084511041641235},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.43994849920272827},{"id":"https://openalex.org/C75553542","wikidata":"https://www.wikidata.org/wiki/Q178161","display_name":"A priori and a posteriori","level":2,"score":0.435660719871521},{"id":"https://openalex.org/C39920418","wikidata":"https://www.wikidata.org/wiki/Q11476","display_name":"Kinematics","level":2,"score":0.4288506805896759},{"id":"https://openalex.org/C2988419192","wikidata":"https://www.wikidata.org/wiki/Q7155","display_name":"Animal behavior","level":2,"score":0.42861664295196533},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.4197115898132324},{"id":"https://openalex.org/C175909808","wikidata":"https://www.wikidata.org/wiki/Q7155","display_name":"Ethology","level":2,"score":0.4128204882144928},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4105663299560547},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.40745705366134644},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2054109275341034},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.15808916091918945},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C90856448","wikidata":"https://www.wikidata.org/wiki/Q431","display_name":"Zoology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C74650414","wikidata":"https://www.wikidata.org/wiki/Q11397","display_name":"Classical mechanics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007814","descriptor_name":"Larva","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007814","descriptor_name":"Larva","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007814","descriptor_name":"Larva","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007814","descriptor_name":"Larva","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013550","descriptor_name":"Swimming","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D013550","descriptor_name":"Swimming","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D013550","descriptor_name":"Swimming","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D013550","descriptor_name":"Swimming","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015027","descriptor_name":"Zebrafish","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true},{"descriptor_ui":"D015027","descriptor_name":"Zebrafish","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true},{"descriptor_ui":"D015027","descriptor_name":"Zebrafish","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true},{"descriptor_ui":"D015027","descriptor_name":"Zebrafish","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1371/journal.pcbi.1011566","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1011566","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1011566&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:37871114","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37871114","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:10621986","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10621986","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10621986/pdf/pcbi.1011566.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:e6abd2a3b56b4bcbbba69953e6e3c07f","is_oa":true,"landing_page_url":"https://doaj.org/article/e6abd2a3b56b4bcbbba69953e6e3c07f","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 19, Iss 10, p e1011566 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1011566","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1011566","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1011566&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/14","display_name":"Life below water","score":0.7300000190734863}],"awards":[{"id":"https://openalex.org/G3141805827","display_name":"MRI: Development of an Instrument for Deep Learning Research","funder_award_id":"1725729","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G552863246","display_name":"Protein dynamics: from the marginally to the extremely stable","funder_award_id":"2205665","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6967461854","display_name":"PFC:  Center for the Physics of Living Cells","funder_award_id":"1430124","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4387873291.pdf","grobid_xml":"https://content.openalex.org/works/W4387873291.grobid-xml"},"referenced_works_count":58,"referenced_works":["https://openalex.org/W173114809","https://openalex.org/W774008956","https://openalex.org/W1731081199","https://openalex.org/W1836465849","https://openalex.org/W1901129140","https://openalex.org/W1986886445","https://openalex.org/W1999603779","https://openalex.org/W2016741820","https://openalex.org/W2023906702","https://openalex.org/W2033819227","https://openalex.org/W2052924105","https://openalex.org/W2071663937","https://openalex.org/W2098321919","https://openalex.org/W2123327766","https://openalex.org/W2133872729","https://openalex.org/W2141066952","https://openalex.org/W2142254043","https://openalex.org/W2154723612","https://openalex.org/W2165698076","https://openalex.org/W2168441478","https://openalex.org/W2209764240","https://openalex.org/W2265547301","https://openalex.org/W2300300693","https://openalex.org/W2307770531","https://openalex.org/W2491160165","https://openalex.org/W2491971255","https://openalex.org/W2534375344","https://openalex.org/W2576289912","https://openalex.org/W2606942125","https://openalex.org/W2754636875","https://openalex.org/W2756339569","https://openalex.org/W2774749442","https://openalex.org/W2781525085","https://openalex.org/W2866599971","https://openalex.org/W2883981152","https://openalex.org/W2887114371","https://openalex.org/W2941352015","https://openalex.org/W2947749380","https://openalex.org/W2952956973","https://openalex.org/W2963826402","https://openalex.org/W2977639561","https://openalex.org/W2980030724","https://openalex.org/W2990556706","https://openalex.org/W2991289264","https://openalex.org/W3055194044","https://openalex.org/W3082044205","https://openalex.org/W3092363165","https://openalex.org/W3092609815","https://openalex.org/W3098086214","https://openalex.org/W3136178425","https://openalex.org/W3140378620","https://openalex.org/W3157861089","https://openalex.org/W3171326146","https://openalex.org/W4223422326","https://openalex.org/W4223962547","https://openalex.org/W4230207062","https://openalex.org/W4385491069","https://openalex.org/W6782590680"],"related_works":["https://openalex.org/W2414711009","https://openalex.org/W4386486514","https://openalex.org/W4294967731","https://openalex.org/W294724428","https://openalex.org/W2513438625","https://openalex.org/W4206070324","https://openalex.org/W167067186","https://openalex.org/W4399579663","https://openalex.org/W3211106913","https://openalex.org/W4281490576"],"abstract_inverted_index":{"Quantitative":[0],"ethology":[1],"requires":[2],"an":[3,7],"accurate":[4,58],"estimation":[5,26,176,195],"of":[6,48,69,144,154,163,177,181,198,212],"organism's":[8],"postural":[9],"dynamics":[10],"in":[11,27,52,93,115,234],"three":[12,196],"dimensions":[13],"plus":[14],"time.":[15],"Technological":[16],"progress":[17],"over":[18],"the":[19,46,76,206],"last":[20],"decade":[21],"has":[22],"made":[23],"animal":[24],"pose":[25,47,175,194],"challenging":[28],"scenarios":[29],"possible":[30],"with":[31,102,202],"unprecedented":[32],"detail.":[33],"Here,":[34],"we":[35,105,168],"present":[36],"(i)":[37],"a":[38,53,65,85,98,125,142,150,161,170,173,178],"fast":[39],"automated":[40],"method":[41],"to":[42,87,117,129,205,220],"record":[43,106],"and":[44,75,79,83,114,119,201,228],"track":[45],"individual":[49],"larval":[50,71,91,108,132,146,165,193,214],"zebrafish":[51,78],"3-D":[54,70,131,151,157,213],"environment,":[55],"applicable":[56],"when":[57],"human":[59,190],"labeling":[60],"is":[61,139],"not":[62,232],"possible;":[63],"(ii)":[64],"rich":[66],"annotated":[67,90],"dataset":[68],"poses":[72,133,166],"for":[73],"ethologists":[74],"general":[77],"machine":[80],"learning":[81],"community;":[82],"(iii)":[84],"technique":[86],"generate":[88],"realistic,":[89],"images":[92,147],"different":[94,225],"behavioral":[95,230],"contexts.":[96],"Using":[97],"three-camera":[99],"system":[100],"calibrated":[101],"refraction":[103],"correction,":[104],"diverse":[107],"swims":[109],"under":[110,224],"free":[111],"swimming":[112],"conditions":[113,227],"response":[116],"acoustic":[118],"optical":[120],"stimuli.":[121],"We":[122],"then":[123],"employ":[124],"convolutional":[126],"neural":[127],"network":[128,138,185],"estimate":[130,169],"from":[134,160],"video":[135],"images.":[136],"The":[137],"trained":[140,187],"against":[141],"set":[143],"synthetic":[145],"rendered":[148],"using":[149,172],"physical":[152],"model":[153,158],"larvae.":[155],"This":[156],"samples":[159],"distribution":[162],"realistic":[164],"that":[167],"priori":[171],"template-based":[174,207],"small":[179],"number":[180],"swim":[182],"bouts.":[183],"Our":[184],"model,":[186],"without":[188],"any":[189],"annotation,":[191],"performs":[192],"orders":[197],"magnitude":[199],"faster":[200],"accuracy":[203],"comparable":[204],"approach,":[208],"capturing":[209],"detailed":[210],"kinematics":[211],"swims.":[215],"It":[216],"also":[217],"applies":[218],"accurately":[219],"other":[221],"datasets":[222],"collected":[223],"imaging":[226],"containing":[229],"contexts":[231],"included":[233],"our":[235],"training.":[236]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":2}],"updated_date":"2026-08-28T12:50:07.497085","created_date":"2025-10-10T00:00:00"}
