{"id":"https://openalex.org/W4393318918","doi":"https://doi.org/10.1371/journal.pcbi.1011518","title":"Modeling resistance to the broadly neutralizing antibody PGT121 in people living with HIV-1","display_name":"Modeling resistance to the broadly neutralizing antibody PGT121 in people living with HIV-1","publication_year":2024,"publication_date":"2024-03-29","ids":{"openalex":"https://openalex.org/W4393318918","doi":"https://doi.org/10.1371/journal.pcbi.1011518","pmid":"https://pubmed.ncbi.nlm.nih.gov/38551976"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1011518","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1011518","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1011518&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1011518&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5091392935","display_name":"Tyler Cassidy","orcid":"https://orcid.org/0000-0003-0757-0017"},"institutions":[{"id":"https://openalex.org/I130828816","display_name":"University of Leeds","ror":"https://ror.org/024mrxd33","country_code":"GB","type":"education","lineage":["https://openalex.org/I130828816"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Tyler Cassidy","raw_affiliation_strings":["School of Mathematics, University of Leeds, Leeds, United Kingdom"],"raw_orcid":"https://orcid.org/0000-0003-0757-0017","affiliations":[{"raw_affiliation_string":"School of Mathematics, University of Leeds, Leeds, United Kingdom","institution_ids":["https://openalex.org/I130828816"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035644016","display_name":"Kathryn E. Stephenson","orcid":"https://orcid.org/0000-0002-3440-4105"},"institutions":[{"id":"https://openalex.org/I1316535847","display_name":"Beth Israel Deaconess Medical Center","ror":"https://ror.org/04drvxt59","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1316535847"]},{"id":"https://openalex.org/I2802422659","display_name":"Ragon Institute of MGH, MIT and Harvard","ror":"https://ror.org/053r20n13","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I136199984","https://openalex.org/I2802422659","https://openalex.org/I4210087915","https://openalex.org/I48633490","https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kathryn E. Stephenson","raw_affiliation_strings":["Center for Virology and Vaccine Research, Beth Israel Deaconess Medical Center, Boston, Massachusetts, United States of America","Division of Infectious Diseases, Beth Israel Deaconess Medical Center, Boston, Massachusetts, United States of America","Ragon Institute of MGH, MIT and Harvard, Cambridge, Massachusetts, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Virology and Vaccine Research, Beth Israel Deaconess Medical Center, Boston, Massachusetts, United States of America","institution_ids":["https://openalex.org/I1316535847"]},{"raw_affiliation_string":"Division of Infectious Diseases, Beth Israel Deaconess Medical Center, Boston, Massachusetts, United States of America","institution_ids":["https://openalex.org/I1316535847"]},{"raw_affiliation_string":"Ragon Institute of MGH, MIT and Harvard, Cambridge, Massachusetts, United States of America","institution_ids":["https://openalex.org/I2802422659"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054247332","display_name":"Dan H. Barouch","orcid":"https://orcid.org/0000-0001-5127-4659"},"institutions":[{"id":"https://openalex.org/I1316535847","display_name":"Beth Israel Deaconess Medical Center","ror":"https://ror.org/04drvxt59","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1316535847"]},{"id":"https://openalex.org/I2802422659","display_name":"Ragon Institute of MGH, MIT and Harvard","ror":"https://ror.org/053r20n13","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I136199984","https://openalex.org/I2802422659","https://openalex.org/I4210087915","https://openalex.org/I48633490","https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dan H. Barouch","raw_affiliation_strings":["Center for Virology and Vaccine Research, Beth Israel Deaconess Medical Center, Boston, Massachusetts, United States of America","Division of Infectious Diseases, Beth Israel Deaconess Medical Center, Boston, Massachusetts, United States of America","Ragon Institute of MGH, MIT and Harvard, Cambridge, Massachusetts, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Virology and Vaccine Research, Beth Israel Deaconess Medical Center, Boston, Massachusetts, United States of America","institution_ids":["https://openalex.org/I1316535847"]},{"raw_affiliation_string":"Division of Infectious Diseases, Beth Israel Deaconess Medical Center, Boston, Massachusetts, United States of America","institution_ids":["https://openalex.org/I1316535847"]},{"raw_affiliation_string":"Ragon Institute of MGH, MIT and Harvard, Cambridge, Massachusetts, United States of America","institution_ids":["https://openalex.org/I2802422659"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058338534","display_name":"Alan S. Perelson","orcid":"https://orcid.org/0000-0002-2455-0002"},"institutions":[{"id":"https://openalex.org/I1343871089","display_name":"Los Alamos National Laboratory","ror":"https://ror.org/01e41cf67","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I1343871089","https://openalex.org/I198811213","https://openalex.org/I4210120050"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Alan S. Perelson","raw_affiliation_strings":["Theoretical Biology and Biophysics, Los Alamos National Laboratory, Los Alamos, New Mexico, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-2455-0002","affiliations":[{"raw_affiliation_string":"Theoretical Biology and Biophysics, Los Alamos National Laboratory, Los Alamos, New Mexico, United States of America","institution_ids":["https://openalex.org/I1343871089"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5058338534"],"corresponding_institution_ids":["https://openalex.org/I1343871089"],"apc_list":{"value":3043,"currency":"USD","value_usd":3043},"apc_paid":{"value":3043,"currency":"USD","value_usd":3043},"fwci":1.3755,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.79141856,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"20","issue":"3","first_page":"e1011518","last_page":"e1011518"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10112","display_name":"HIV Research and Treatment","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10112","display_name":"HIV Research and Treatment","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10526","display_name":"HIV/AIDS drug development and treatment","score":0.9916999936103821,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10151","display_name":"Hepatitis C virus research","score":0.98580002784729,"subfield":{"id":"https://openalex.org/subfields/2721","display_name":"Hepatology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/neutralization","display_name":"Neutralization","score":0.7877794504165649},{"id":"https://openalex.org/keywords/neutralizing-antibody","display_name":"Neutralizing antibody","score":0.6941916942596436},{"id":"https://openalex.org/keywords/human-immunodeficiency-virus","display_name":"Human immunodeficiency virus (HIV)","score":0.5906599760055542},{"id":"https://openalex.org/keywords/antibody","display_name":"Antibody","score":0.5905015468597412},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.5759108662605286},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.5652464628219604},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.5294004678726196},{"id":"https://openalex.org/keywords/clinical-trial","display_name":"Clinical trial","score":0.5001914501190186},{"id":"https://openalex.org/keywords/resistance","display_name":"Resistance (ecology)","score":0.4725962281227112},{"id":"https://openalex.org/keywords/glycan","display_name":"Glycan","score":0.4615151584148407},{"id":"https://openalex.org/keywords/viral-load","display_name":"Viral load","score":0.44308215379714966},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.43183478713035583},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.4080601930618286},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.25622087717056274},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1292019486427307},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.10750958323478699},{"id":"https://openalex.org/keywords/glycoprotein","display_name":"Glycoprotein","score":0.0977519154548645}],"concepts":[{"id":"https://openalex.org/C14086860","wikidata":"https://www.wikidata.org/wiki/Q337120","display_name":"Neutralization","level":3,"score":0.7877794504165649},{"id":"https://openalex.org/C2779261636","wikidata":"https://www.wikidata.org/wiki/Q7003054","display_name":"Neutralizing antibody","level":3,"score":0.6941916942596436},{"id":"https://openalex.org/C3013748606","wikidata":"https://www.wikidata.org/wiki/Q15787","display_name":"Human immunodeficiency virus (HIV)","level":2,"score":0.5906599760055542},{"id":"https://openalex.org/C159654299","wikidata":"https://www.wikidata.org/wiki/Q79460","display_name":"Antibody","level":2,"score":0.5905015468597412},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5759108662605286},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.5652464628219604},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.5294004678726196},{"id":"https://openalex.org/C535046627","wikidata":"https://www.wikidata.org/wiki/Q30612","display_name":"Clinical trial","level":2,"score":0.5001914501190186},{"id":"https://openalex.org/C57473165","wikidata":"https://www.wikidata.org/wiki/Q7315604","display_name":"Resistance (ecology)","level":2,"score":0.4725962281227112},{"id":"https://openalex.org/C206212055","wikidata":"https://www.wikidata.org/wiki/Q2553138","display_name":"Glycan","level":3,"score":0.4615151584148407},{"id":"https://openalex.org/C142462285","wikidata":"https://www.wikidata.org/wiki/Q2528140","display_name":"Viral load","level":3,"score":0.44308215379714966},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.43183478713035583},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.4080601930618286},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.25622087717056274},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1292019486427307},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.10750958323478699},{"id":"https://openalex.org/C108625454","wikidata":"https://www.wikidata.org/wiki/Q187126","display_name":"Glycoprotein","level":2,"score":0.0977519154548645},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000080908","descriptor_name":"Broadly Neutralizing Antibodies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000080908","descriptor_name":"Broadly Neutralizing Antibodies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000080908","descriptor_name":"Broadly Neutralizing Antibodies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000080908","descriptor_name":"Broadly Neutralizing Antibodies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000080908","descriptor_name":"Broadly Neutralizing Antibodies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000080908","descriptor_name":"Broadly Neutralizing Antibodies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000080908","descriptor_name":"Broadly Neutralizing Antibodies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015483","descriptor_name":"HIV Antibodies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015483","descriptor_name":"HIV Antibodies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015483","descriptor_name":"HIV Antibodies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015483","descriptor_name":"HIV Antibodies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015483","descriptor_name":"HIV Antibodies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015483","descriptor_name":"HIV Antibodies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015483","descriptor_name":"HIV Antibodies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057134","descriptor_name":"Antibodies, Neutralizing","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D057134","descriptor_name":"Antibodies, Neutralizing","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D057134","descriptor_name":"Antibodies, Neutralizing","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D057134","descriptor_name":"Antibodies, Neutralizing","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D057134","descriptor_name":"Antibodies, Neutralizing","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D057134","descriptor_name":"Antibodies, Neutralizing","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D057134","descriptor_name":"Antibodies, Neutralizing","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1371/journal.pcbi.1011518","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1011518","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1011518&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:38551976","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38551976","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":"Journal Article"},{"id":"pmh:oai:eprints.whiterose.ac.uk:228670","is_oa":true,"landing_page_url":"https://orcid.org/0000-0003-0757-0017>,","pdf_url":"https://eprints.whiterose.ac.uk/id/eprint/228670/1/journal.pcbi.1011518.pdf","source":{"id":"https://openalex.org/S4306400854","display_name":"White Rose Research Online (University of Leeds, The University of Sheffield, University of York)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2800616092","host_organization_name":"White Rose University Consortium","host_organization_lineage":["https://openalex.org/I2800616092"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:osti.gov:2433941","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/2433941","pdf_url":"https://www.osti.gov/servlets/purl/2433941","source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11006161","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11006161","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11006161/pdf/pcbi.1011518.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"},{"id":"pmh:oai:RePEc:plo:pcbi00:1011518","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1011518","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:d7081fcfeb604410b37e85281ccd19ab","is_oa":false,"landing_page_url":"https://doaj.org/article/d7081fcfeb604410b37e85281ccd19ab","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 20, Iss 3, p e1011518 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1011518","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1011518","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1011518&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.7900000214576721,"display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G1017065088","display_name":null,"funder_award_id":"#89233218CNA000001","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G1382350427","display_name":null,"funder_award_id":"R01 AI028433","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G1738550537","display_name":"Project 2: Analysis of Reservoir Dynamics in SIV-Infected Rhesus Macaques","funder_award_id":"5p01ai169615-02","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G1964458668","display_name":null,"funder_award_id":"R01 AI149670","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G2116663306","display_name":"Single-Cell Analysis of the HIV/SIV Reservoir","funder_award_id":"5r01ai149670-05","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2661261615","display_name":null,"funder_award_id":"R01-AI02843","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3141155888","display_name":"Multi-Omics Analysis of Broadly Neutralizing Antibodies and Therapeutic Vaccination","funder_award_id":"5p01ai177687-02","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3328816081","display_name":null,"funder_award_id":"UM1AI164561","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G3456381658","display_name":"Reversing Immune Dysfunction for HIV-1 Eradication","funder_award_id":"5um1ai164561-03","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3610400634","display_name":null,"funder_award_id":"PGT121","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3837092620","display_name":null,"funder_award_id":"K23 AI114381","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G3864473450","display_name":null,"funder_award_id":"UM1 AI164556","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G4823268887","display_name":"Diversity of Immune Responses Elicited by HIV Vaccines","funder_award_id":"5k23ai114381-05","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G512890612","display_name":null,"funder_award_id":"P01 AI177687","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G516324805","display_name":"I4C 2.0: Immunotherapy for Cure","funder_award_id":"5um1ai164556-03","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7928197481","display_name":null,"funder_award_id":"P01 AI169615","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G8091123611","display_name":"Modeling Viral and T Lymphocyte Dynamics","funder_award_id":"5r01od011095-31","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4393318918.pdf","grobid_xml":"https://content.openalex.org/works/W4393318918.grobid-xml"},"referenced_works_count":76,"referenced_works":["https://openalex.org/W1497870368","https://openalex.org/W1974129636","https://openalex.org/W1989762371","https://openalex.org/W1995227882","https://openalex.org/W2013914180","https://openalex.org/W2022098233","https://openalex.org/W2022899350","https://openalex.org/W2026059861","https://openalex.org/W2038110764","https://openalex.org/W2045550107","https://openalex.org/W2051269276","https://openalex.org/W2060735144","https://openalex.org/W2064059889","https://openalex.org/W2067656314","https://openalex.org/W2081313987","https://openalex.org/W2089763487","https://openalex.org/W2091174536","https://openalex.org/W2101516953","https://openalex.org/W2113105229","https://openalex.org/W2113236498","https://openalex.org/W2120315965","https://openalex.org/W2124860027","https://openalex.org/W2127759858","https://openalex.org/W2131230954","https://openalex.org/W2132759863","https://openalex.org/W2144549163","https://openalex.org/W2146089461","https://openalex.org/W2147413871","https://openalex.org/W2156995638","https://openalex.org/W2165692875","https://openalex.org/W2168648059","https://openalex.org/W2168736565","https://openalex.org/W2198318089","https://openalex.org/W2200798239","https://openalex.org/W2219479419","https://openalex.org/W2231521459","https://openalex.org/W2270775403","https://openalex.org/W2294981494","https://openalex.org/W2324835369","https://openalex.org/W2515696031","https://openalex.org/W2556485149","https://openalex.org/W2572760626","https://openalex.org/W2597074085","https://openalex.org/W2729072219","https://openalex.org/W2742014443","https://openalex.org/W2743105554","https://openalex.org/W2755090825","https://openalex.org/W2885985538","https://openalex.org/W2895775323","https://openalex.org/W2897165284","https://openalex.org/W2898001309","https://openalex.org/W2899916926","https://openalex.org/W2952062677","https://openalex.org/W2953378801","https://openalex.org/W2961620228","https://openalex.org/W3002664025","https://openalex.org/W3003228485","https://openalex.org/W3003399029","https://openalex.org/W3006954854","https://openalex.org/W3020606853","https://openalex.org/W3023816852","https://openalex.org/W3024963524","https://openalex.org/W3102649939","https://openalex.org/W3109491463","https://openalex.org/W3144129814","https://openalex.org/W3184866903","https://openalex.org/W3196744449","https://openalex.org/W3198820242","https://openalex.org/W3204510954","https://openalex.org/W4211177544","https://openalex.org/W4280561770","https://openalex.org/W4285793594","https://openalex.org/W4292641516","https://openalex.org/W4307451954","https://openalex.org/W4384627195","https://openalex.org/W4386305723"],"related_works":["https://openalex.org/W1545923077","https://openalex.org/W3133547117","https://openalex.org/W2309520848","https://openalex.org/W3110499570","https://openalex.org/W2093961711","https://openalex.org/W2437044700","https://openalex.org/W2063036651","https://openalex.org/W3114250596","https://openalex.org/W1496641589","https://openalex.org/W4285090954"],"abstract_inverted_index":{"PGT121":[0,20,38,59,77,106,130,174],"is":[1],"a":[2,31,160],"broadly":[3],"neutralizing":[4],"antibody":[5,71],"in":[6,30,42,47,175],"clinical":[7,34,94],"development":[8],"for":[9],"the":[10,22,43,51,87,102,111,114,122,125,147,169],"treatment":[11],"and":[12,25,73,108,132],"prevention":[13],"of":[14,45,86,124,151,163,173],"HIV-1":[15,23,88],"infection":[16],"via":[17],"passive":[18],"administration.":[19],"targets":[21],"V3-glycan":[24],"demonstrated":[26],"potent":[27],"antiviral":[28],"activity":[29],"phase":[32,92],"I":[33,93],"trial.":[35,95],"Resistance":[36],"to":[37,58,76,100,105,109,136,143],"monotherapy":[39],"rapidly":[40],"occurred":[41],"majority":[44],"participants":[46,177],"this":[48,91],"trial":[49],"with":[50],"sampled":[52],"rebound":[53],"viruses":[54],"being":[55],"entirely":[56],"resistant":[57,133,157],"mediated":[60],"neutralization.":[61],"However,":[62],"two":[63],"individuals":[64],"experienced":[65],"long-term":[66,116,180],"ART-free":[67],"viral":[68,79,117,181],"suppression":[69],"following":[70],"infusion":[72],"retained":[74],"sensitivity":[75],"upon":[78],"rebound.":[80],"Here,":[81],"we":[82,145],"develop":[83],"mathematical":[84],"models":[85,99,142],"dynamics":[89,103],"during":[90],"We":[96],"utilize":[97],"these":[98],"understand":[101],"leading":[104],"resistance":[107],"identify":[110,146],"mechanisms":[112],"driving":[113],"observed":[115],"control.":[118,182],"Our":[119],"modeling":[120,167],"highlights":[121],"importance":[123],"relative":[126],"fitness":[127],"difference":[128],"between":[129],"sensitive":[131],"subpopulations":[134],"prior":[135],"treatment.":[137],"Specifically,":[138],"by":[139],"fitting":[140],"our":[141,166],"data,":[144],"treatment-induced":[148],"competitive":[149],"advantage":[150],"previously":[152],"existing":[153],"or":[154],"newly":[155],"generated":[156],"population":[158],"as":[159],"primary":[161],"driver":[162],"resistance.":[164],"Finally,":[165],"emphasizes":[168],"high":[170],"neutralization":[171],"ability":[172],"both":[176],"who":[178],"exhibited":[179]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
