{"id":"https://openalex.org/W4386307602","doi":"https://doi.org/10.1371/journal.pcbi.1011344","title":"iCircDA-NEAE: Accelerated attribute network embedding and dynamic convolutional autoencoder for circRNA-disease associations prediction","display_name":"iCircDA-NEAE: Accelerated attribute network embedding and dynamic convolutional autoencoder for circRNA-disease associations prediction","publication_year":2023,"publication_date":"2023-08-31","ids":{"openalex":"https://openalex.org/W4386307602","doi":"https://doi.org/10.1371/journal.pcbi.1011344","pmid":"https://pubmed.ncbi.nlm.nih.gov/37651321"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1011344","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1011344","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1011344&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1011344&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101924090","display_name":"Lin Yuan","orcid":"https://orcid.org/0000-0002-9694-8191"},"institutions":[{"id":"https://openalex.org/I152269853","display_name":"Qilu University of Technology","ror":"https://ror.org/04hyzq608","country_code":"CN","type":"education","lineage":["https://openalex.org/I152269853"]},{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]},{"id":"https://openalex.org/I4210142748","display_name":"Shandong Academy of Sciences","ror":"https://ror.org/04y8d6y55","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210142748"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Lin Yuan","raw_affiliation_strings":["Key Laboratory of Computing Power Network and Information Security, Ministry of Education, Shandong Computer Science Center, Qilu University of Technology (Shandong Academy of Sciences), Jinan, China","Shandong Engineering Research Center of Big Data Applied Technology, Faculty of Computer Science and Technology, Qilu University of Technology (Shandong Academy of Sciences), Jinan, China","Shandong Provincial Key Laboratory of Computer Networks, Shandong Fundamental Research Center for Computer Science, Jinan, China"],"raw_orcid":"https://orcid.org/0000-0002-9694-8191","affiliations":[{"raw_affiliation_string":"Key Laboratory of Computing Power Network and Information Security, Ministry of Education, Shandong Computer Science Center, Qilu University of Technology (Shandong Academy of Sciences), Jinan, China","institution_ids":["https://openalex.org/I152269853","https://openalex.org/I4210142748"]},{"raw_affiliation_string":"Shandong Engineering Research Center of Big Data Applied Technology, Faculty of Computer Science and Technology, Qilu University of Technology (Shandong Academy of Sciences), Jinan, China","institution_ids":["https://openalex.org/I4210142748","https://openalex.org/I152269853"]},{"raw_affiliation_string":"Shandong Provincial Key Laboratory of Computer Networks, Shandong Fundamental Research Center for Computer Science, Jinan, China","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081892558","display_name":"Jiawang Zhao","orcid":null},"institutions":[{"id":"https://openalex.org/I152269853","display_name":"Qilu University of Technology","ror":"https://ror.org/04hyzq608","country_code":"CN","type":"education","lineage":["https://openalex.org/I152269853"]},{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]},{"id":"https://openalex.org/I4210142748","display_name":"Shandong Academy of Sciences","ror":"https://ror.org/04y8d6y55","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210142748"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jiawang Zhao","raw_affiliation_strings":["Key Laboratory of Computing Power Network and Information Security, Ministry of Education, Shandong Computer Science Center, Qilu University of Technology (Shandong Academy of Sciences), Jinan, China","Shandong Engineering Research Center of Big Data Applied Technology, Faculty of Computer Science and Technology, Qilu University of Technology (Shandong Academy of Sciences), Jinan, China","Shandong Provincial Key Laboratory of Computer Networks, Shandong Fundamental Research Center for Computer Science, Jinan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Computing Power Network and Information Security, Ministry of Education, Shandong Computer Science Center, Qilu University of Technology (Shandong Academy of Sciences), Jinan, China","institution_ids":["https://openalex.org/I152269853","https://openalex.org/I4210142748"]},{"raw_affiliation_string":"Shandong Engineering Research Center of Big Data Applied Technology, Faculty of Computer Science and Technology, Qilu University of Technology (Shandong Academy of Sciences), Jinan, China","institution_ids":["https://openalex.org/I4210142748","https://openalex.org/I152269853"]},{"raw_affiliation_string":"Shandong Provincial Key Laboratory of Computer Networks, Shandong Fundamental Research Center for Computer Science, Jinan, China","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089051425","display_name":"Zhen Shen","orcid":"https://orcid.org/0000-0001-7572-9195"},"institutions":[{"id":"https://openalex.org/I4210115515","display_name":"Nanyang Institute of Technology","ror":"https://ror.org/0203c2755","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210115515"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zhen Shen","raw_affiliation_strings":["School of Computer and Software, Nanyang Institute of Technology, Nanyang, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer and Software, Nanyang Institute of Technology, Nanyang, China","institution_ids":["https://openalex.org/I4210115515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062540383","display_name":"Qinhu Zhang","orcid":"https://orcid.org/0000-0002-4232-7736"},"institutions":[{"id":"https://openalex.org/I4394709157","display_name":"Eastern Institute of Technology, Ningbo","ror":"https://ror.org/036mbz113","country_code":null,"type":"education","lineage":["https://openalex.org/I4394709157"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Qinhu Zhang","raw_affiliation_strings":["Eastern Institute for Advanced Study, Eastern Institute of Technology, Ningbo, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Eastern Institute for Advanced Study, Eastern Institute of Technology, Ningbo, China","institution_ids":["https://openalex.org/I4394709157"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107808842","display_name":"Yushui Geng","orcid":"https://orcid.org/0009-0001-7587-4242"},"institutions":[{"id":"https://openalex.org/I152269853","display_name":"Qilu University of Technology","ror":"https://ror.org/04hyzq608","country_code":"CN","type":"education","lineage":["https://openalex.org/I152269853"]},{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]},{"id":"https://openalex.org/I4210142748","display_name":"Shandong Academy of Sciences","ror":"https://ror.org/04y8d6y55","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210142748"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yushui Geng","raw_affiliation_strings":["Key Laboratory of Computing Power Network and Information Security, Ministry of Education, Shandong Computer Science Center, Qilu University of Technology (Shandong Academy of Sciences), Jinan, China","Shandong Engineering Research Center of Big Data Applied Technology, Faculty of Computer Science and Technology, Qilu University of Technology (Shandong Academy of Sciences), Jinan, China","Shandong Provincial Key Laboratory of Computer Networks, Shandong Fundamental Research Center for Computer Science, Jinan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Computing Power Network and Information Security, Ministry of Education, Shandong Computer Science Center, Qilu University of Technology (Shandong Academy of Sciences), Jinan, China","institution_ids":["https://openalex.org/I152269853","https://openalex.org/I4210142748"]},{"raw_affiliation_string":"Shandong Engineering Research Center of Big Data Applied Technology, Faculty of Computer Science and Technology, Qilu University of Technology (Shandong Academy of Sciences), Jinan, China","institution_ids":["https://openalex.org/I4210142748","https://openalex.org/I152269853"]},{"raw_affiliation_string":"Shandong Provincial Key Laboratory of Computer Networks, Shandong Fundamental Research Center for Computer Science, Jinan, China","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064185915","display_name":"Chun-Hou Zheng","orcid":"https://orcid.org/0000-0002-2695-1926"},"institutions":[{"id":"https://openalex.org/I143868143","display_name":"Anhui University","ror":"https://ror.org/05th6yx34","country_code":"CN","type":"education","lineage":["https://openalex.org/I143868143"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Chun-Hou Zheng","raw_affiliation_strings":["Key Lab of Intelligent Computing and Signal Processing of Ministry of Education, School of Artificial Intelligence, Anhui University, Hefei, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Lab of Intelligent Computing and Signal Processing of Ministry of Education, School of Artificial Intelligence, Anhui University, Hefei, China","institution_ids":["https://openalex.org/I143868143"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060381913","display_name":"De-Shuang Huang","orcid":"https://orcid.org/0000-0002-6759-2691"},"institutions":[{"id":"https://openalex.org/I4394709157","display_name":"Eastern Institute of Technology, Ningbo","ror":"https://ror.org/036mbz113","country_code":null,"type":"education","lineage":["https://openalex.org/I4394709157"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"De-Shuang Huang","raw_affiliation_strings":["Eastern Institute for Advanced Study, Eastern Institute of Technology, Ningbo, China"],"raw_orcid":"https://orcid.org/0000-0002-6759-2691","affiliations":[{"raw_affiliation_string":"Eastern Institute for Advanced Study, Eastern Institute of Technology, Ningbo, China","institution_ids":["https://openalex.org/I4394709157"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5060381913","https://openalex.org/A5062540383","https://openalex.org/A5064185915","https://openalex.org/A5081892558","https://openalex.org/A5089051425","https://openalex.org/A5101924090","https://openalex.org/A5107808842"],"corresponding_institution_ids":["https://openalex.org/I143868143","https://openalex.org/I152269853","https://openalex.org/I154099455","https://openalex.org/I4210115515","https://openalex.org/I4210142748","https://openalex.org/I4394709157"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":8.009,"has_fulltext":true,"cited_by_count":34,"citation_normalized_percentile":{"value":0.97778892,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"19","issue":"8","first_page":"e1011344","last_page":"e1011344"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/jaccard-index","display_name":"Jaccard index","score":0.8202196955680847},{"id":"https://openalex.org/keywords/autoencoder","display_name":"Autoencoder","score":0.7268860936164856},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.638887882232666},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6379929780960083},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5830835103988647},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.5190247297286987},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.5189163684844971},{"id":"https://openalex.org/keywords/semantic-similarity","display_name":"Semantic similarity","score":0.4825853109359741},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4412551522254944},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.438849538564682},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.4133508801460266},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3910598158836365},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.33262577652931213},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.17687326669692993},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1608821451663971},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.09195727109909058}],"concepts":[{"id":"https://openalex.org/C203519979","wikidata":"https://www.wikidata.org/wiki/Q865360","display_name":"Jaccard index","level":3,"score":0.8202196955680847},{"id":"https://openalex.org/C101738243","wikidata":"https://www.wikidata.org/wiki/Q786435","display_name":"Autoencoder","level":3,"score":0.7268860936164856},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.638887882232666},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6379929780960083},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5830835103988647},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.5190247297286987},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.5189163684844971},{"id":"https://openalex.org/C130318100","wikidata":"https://www.wikidata.org/wiki/Q2268914","display_name":"Semantic similarity","level":2,"score":0.4825853109359741},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4412551522254944},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.438849538564682},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.4133508801460266},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3910598158836365},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.33262577652931213},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.17687326669692993},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1608821451663971},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.09195727109909058},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1371/journal.pcbi.1011344","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1011344","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1011344&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:37651321","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37651321","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10470932","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10470932","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10470932/pdf/pcbi.1011344.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"},{"id":"pmh:oai:RePEc:plo:pcbi00:1011344","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1011344","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:5ad4be2f7714471db0c857170b91b9a8","is_oa":true,"landing_page_url":"https://doaj.org/article/5ad4be2f7714471db0c857170b91b9a8","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 19, Iss 8 (2023)","raw_type":"article"},{"id":"pmh:oai:doaj.org/article:f36814d0649b4d8b81db5917ca5b1070","is_oa":true,"landing_page_url":"https://doaj.org/article/f36814d0649b4d8b81db5917ca5b1070","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 19, Iss 8, p e1011344 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1011344","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1011344","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1011344&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1191342315","display_name":null,"funder_award_id":"2018AAA0100100 & 2018YFA0902600","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G1307575636","display_name":null,"funder_award_id":"61932008","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1857610291","display_name":null,"funder_award_id":"62073231","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2034869948","display_name":null,"funder_award_id":"62002266","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2340643075","display_name":null,"funder_award_id":"62002266, 61932008, and 62073231","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2757684404","display_name":null,"funder_award_id":"62102200","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5006237592","display_name":null,"funder_award_id":"U19A2064","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6059964893","display_name":null,"funder_award_id":"STI 2030","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6332332648","display_name":null,"funder_award_id":"62002189","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6915093697","display_name":null,"funder_award_id":"ZR2020QF038","funder_id":"https://openalex.org/F4320324174","funder_display_name":"Natural Science Foundation of Shandong Province"},{"id":"https://openalex.org/G7970487852","display_name":null,"funder_award_id":"2018AAA0100100","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8739739930","display_name":null,"funder_award_id":"2021GXRC046","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320308724","display_name":"Texas Space Grant Consortium","ror":"https://ror.org/05k1jx057"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320324174","display_name":"Natural Science Foundation of Shandong Province","ror":null},{"id":"https://openalex.org/F4320328720","display_name":"Qilu University of Technology","ror":"https://ror.org/04hyzq608"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4386307602.pdf","grobid_xml":"https://content.openalex.org/works/W4386307602.grobid-xml"},"referenced_works_count":62,"referenced_works":["https://openalex.org/W1529026127","https://openalex.org/W1888005072","https://openalex.org/W1967087625","https://openalex.org/W2033338515","https://openalex.org/W2064165694","https://openalex.org/W2106029302","https://openalex.org/W2132940486","https://openalex.org/W2134262590","https://openalex.org/W2141222510","https://openalex.org/W2149151184","https://openalex.org/W2150757437","https://openalex.org/W2154851992","https://openalex.org/W2295598076","https://openalex.org/W2594477541","https://openalex.org/W2622004629","https://openalex.org/W2624817122","https://openalex.org/W2657631929","https://openalex.org/W2751756810","https://openalex.org/W2761699988","https://openalex.org/W2766337096","https://openalex.org/W2782707180","https://openalex.org/W2793179424","https://openalex.org/W2800766678","https://openalex.org/W2807602500","https://openalex.org/W2884943532","https://openalex.org/W2913545508","https://openalex.org/W2941190338","https://openalex.org/W2962756421","https://openalex.org/W2980318882","https://openalex.org/W2981242070","https://openalex.org/W2991743543","https://openalex.org/W2996272498","https://openalex.org/W3005815958","https://openalex.org/W3014454282","https://openalex.org/W3025741173","https://openalex.org/W3026308742","https://openalex.org/W3028860567","https://openalex.org/W3092486253","https://openalex.org/W3104097132","https://openalex.org/W3117000411","https://openalex.org/W3137940759","https://openalex.org/W3157479389","https://openalex.org/W3164648499","https://openalex.org/W3197730739","https://openalex.org/W3202160788","https://openalex.org/W3209709185","https://openalex.org/W4206826027","https://openalex.org/W4207079529","https://openalex.org/W4210852391","https://openalex.org/W4213138800","https://openalex.org/W4213277551","https://openalex.org/W4226097900","https://openalex.org/W4249279051","https://openalex.org/W4290861512","https://openalex.org/W4296580708","https://openalex.org/W4313856528","https://openalex.org/W4317907767","https://openalex.org/W4319299740","https://openalex.org/W4323255631","https://openalex.org/W4365516075","https://openalex.org/W4381432349","https://openalex.org/W4384819700"],"related_works":["https://openalex.org/W2669956259","https://openalex.org/W4312417841","https://openalex.org/W4321369474","https://openalex.org/W2731899572","https://openalex.org/W3133861977","https://openalex.org/W4200173597","https://openalex.org/W3116150086","https://openalex.org/W4287995534","https://openalex.org/W2998168123","https://openalex.org/W2969790209"],"abstract_inverted_index":{"Accumulating":[0],"evidence":[1],"suggests":[2],"that":[3,155,183],"circRNAs":[4,90],"play":[5],"crucial":[6],"roles":[7],"in":[8,17,72],"human":[9],"diseases.":[10,92],"CircRNA-disease":[11],"association":[12,49,87],"prediction":[13,53,173],"is":[14,66],"extremely":[15],"helpful":[16],"understanding":[18],"pathogenesis,":[19],"diagnosis,":[20],"and":[21,50,91,124,132,143],"prevention,":[22],"as":[23,25],"well":[24],"identifying":[26],"relevant":[27,178],"biomarkers.":[28],"During":[29],"the":[30,73,76,129,151,165,171],"past":[31],"few":[32],"years,":[33],"a":[34,98],"large":[35],"number":[36],"of":[37,164],"deep":[38,100],"learning":[39,101],"(DL)":[40],"based":[41,136],"methods":[42,68,81,160],"have":[43],"been":[44],"proposed":[45],"for":[46,128],"predicting":[47],"circRNA-disease":[48,107,168,190],"achieved":[51],"impressive":[52],"performance.":[54],"However,":[55],"there":[56],"are":[57,82],"two":[58],"main":[59],"drawbacks":[60],"to":[61,85,105],"these":[62,67,80],"methods.":[63],"The":[64],"first":[65,130],"underutilize":[69],"biometric":[70],"information":[71],"data.":[74],"Second,":[75],"features":[77,135],"extracted":[78],"by":[79,177],"not":[83],"outstanding":[84],"represent":[86],"characteristics":[88],"between":[89],"In":[93,109],"this":[94],"study,":[95],"we":[96,111,181],"developed":[97],"novel":[99],"model,":[102],"named":[103],"iCircDA-NEAE,":[104],"predict":[106,187],"associations.":[108,191],"particular,":[110],"use":[112],"disease":[113],"semantic":[114],"similarity,":[115,123],"Gaussian":[116],"interaction":[117],"profile":[118,122],"kernel,":[119],"circRNA":[120],"expression":[121],"Jaccard":[125],"similarity":[126],"simultaneously":[127],"time,":[131],"extract":[133],"hidden":[134],"on":[137,150],"accelerated":[138],"attribute":[139],"network":[140],"embedding":[141],"(AANE)":[142],"dynamic":[144],"convolutional":[145],"autoencoder":[146],"(DCAE).":[147],"Experimental":[148],"results":[149],"circR2Disease":[152],"dataset":[153],"show":[154],"iCircDA-NEAE":[156,184],"outperforms":[157],"other":[158],"competing":[159],"significantly.":[161],"Besides,":[162],"16":[163],"top":[166],"20":[167],"pairs":[169],"with":[170],"highest":[172],"scores":[174],"were":[175],"validated":[176],"literature.":[179],"Furthermore,":[180],"observe":[182],"can":[185],"effectively":[186],"new":[188],"potential":[189]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":17},{"year":2024,"cited_by_count":12}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
