{"id":"https://openalex.org/W4379795026","doi":"https://doi.org/10.1371/journal.pcbi.1011075","title":"Latent Dirichlet Allocation modeling of environmental microbiomes","display_name":"Latent Dirichlet Allocation modeling of environmental microbiomes","publication_year":2023,"publication_date":"2023-06-08","ids":{"openalex":"https://openalex.org/W4379795026","doi":"https://doi.org/10.1371/journal.pcbi.1011075","pmid":"https://pubmed.ncbi.nlm.nih.gov/37289841"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1011075","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1011075","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1011075&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1011075&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025375789","display_name":"Anastasiia Kim","orcid":"https://orcid.org/0000-0002-8702-0754"},"institutions":[{"id":"https://openalex.org/I1343871089","display_name":"Los Alamos National Laboratory","ror":"https://ror.org/01e41cf67","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I1343871089","https://openalex.org/I198811213","https://openalex.org/I4210120050"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Anastasiia Kim","raw_affiliation_strings":["Computer, Computational, and Statistical Sciences Division, Los Alamos National Laboratory, Los Alamos, New Mexico, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-8702-0754","affiliations":[{"raw_affiliation_string":"Computer, Computational, and Statistical Sciences Division, Los Alamos National Laboratory, Los Alamos, New Mexico, United States of America","institution_ids":["https://openalex.org/I1343871089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027109329","display_name":"Sanna Sevanto","orcid":"https://orcid.org/0000-0001-9127-5285"},"institutions":[{"id":"https://openalex.org/I1343871089","display_name":"Los Alamos National Laboratory","ror":"https://ror.org/01e41cf67","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I1343871089","https://openalex.org/I198811213","https://openalex.org/I4210120050"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sanna Sevanto","raw_affiliation_strings":["Earth and Environmental Sciences Division, Los Alamos National Laboratory, Los Alamos, New Mexico, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Earth and Environmental Sciences Division, Los Alamos National Laboratory, Los Alamos, New Mexico, United States of America","institution_ids":["https://openalex.org/I1343871089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078552005","display_name":"Eric R. Moore","orcid":"https://orcid.org/0000-0001-5834-8753"},"institutions":[{"id":"https://openalex.org/I1343871089","display_name":"Los Alamos National Laboratory","ror":"https://ror.org/01e41cf67","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I1343871089","https://openalex.org/I198811213","https://openalex.org/I4210120050"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eric R. Moore","raw_affiliation_strings":["Bioscience Division, Los Alamos National Laboratory, Los Alamos, New Mexico, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioscience Division, Los Alamos National Laboratory, Los Alamos, New Mexico, United States of America","institution_ids":["https://openalex.org/I1343871089"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5021344986","display_name":"Nicholas Lubbers","orcid":"https://orcid.org/0000-0002-9001-9973"},"institutions":[{"id":"https://openalex.org/I1343871089","display_name":"Los Alamos National Laboratory","ror":"https://ror.org/01e41cf67","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I1343871089","https://openalex.org/I198811213","https://openalex.org/I4210120050"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nicholas Lubbers","raw_affiliation_strings":["Computer, Computational, and Statistical Sciences Division, Los Alamos National Laboratory, Los Alamos, New Mexico, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer, Computational, and Statistical Sciences Division, Los Alamos National Laboratory, Los Alamos, New Mexico, United States of America","institution_ids":["https://openalex.org/I1343871089"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5025375789"],"corresponding_institution_ids":["https://openalex.org/I1343871089"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":1.1381,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.78156472,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"19","issue":"6","first_page":"e1011075","last_page":"e1011075"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9934999942779541,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9623000025749207,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microbiome","display_name":"Microbiome","score":0.9406123161315918},{"id":"https://openalex.org/keywords/latent-dirichlet-allocation","display_name":"Latent Dirichlet allocation","score":0.8579510450363159},{"id":"https://openalex.org/keywords/taxon","display_name":"Taxon","score":0.5799213647842407},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5418016314506531},{"id":"https://openalex.org/keywords/organism","display_name":"Organism","score":0.435604453086853},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.39115065336227417},{"id":"https://openalex.org/keywords/topic-model","display_name":"Topic model","score":0.28143203258514404},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.25184422731399536},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.17403995990753174},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.16449981927871704},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09090936183929443}],"concepts":[{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.9406123161315918},{"id":"https://openalex.org/C500882744","wikidata":"https://www.wikidata.org/wiki/Q269236","display_name":"Latent Dirichlet allocation","level":3,"score":0.8579510450363159},{"id":"https://openalex.org/C71640776","wikidata":"https://www.wikidata.org/wiki/Q16521","display_name":"Taxon","level":2,"score":0.5799213647842407},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5418016314506531},{"id":"https://openalex.org/C137858568","wikidata":"https://www.wikidata.org/wiki/Q7239","display_name":"Organism","level":2,"score":0.435604453086853},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.39115065336227417},{"id":"https://openalex.org/C171686336","wikidata":"https://www.wikidata.org/wiki/Q3532085","display_name":"Topic model","level":2,"score":0.28143203258514404},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.25184422731399536},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.17403995990753174},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.16449981927871704},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09090936183929443}],"mesh":[{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056265","descriptor_name":"Microbial Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056265","descriptor_name":"Microbial Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056265","descriptor_name":"Microbial Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056265","descriptor_name":"Microbial Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":7,"locations":[{"id":"doi:10.1371/journal.pcbi.1011075","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1011075","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1011075&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:37289841","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37289841","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10249879","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10249879","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10249879/pdf/pcbi.1011075.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:349f1d8df53a4d7f8c81f34108c29c1e","is_oa":true,"landing_page_url":"https://doaj.org/article/349f1d8df53a4d7f8c81f34108c29c1e","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 19, Iss 6 (2023)","raw_type":"article"},{"id":"pmh:oai:doaj.org/article:53294ed25b30454e84af66956b1d334a","is_oa":true,"landing_page_url":"https://doaj.org/article/53294ed25b30454e84af66956b1d334a","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 19, Iss 6, p e1011075 (2023)","raw_type":"article"},{"id":"pmh:oai:osti.gov:1984309","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1984309","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:osti.gov:1987393","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1987393","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1011075","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1011075","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1011075&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.550000011920929,"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G2039848970","display_name":null,"funder_award_id":"20200109DR","funder_id":"https://openalex.org/F4320337547","funder_display_name":"Laboratory Directed Research and Development"},{"id":"https://openalex.org/G591491018","display_name":null,"funder_award_id":"20200109DR","funder_id":"https://openalex.org/F4320338304","funder_display_name":"Los Alamos National Laboratory"}],"funders":[{"id":"https://openalex.org/F4320306114","display_name":"U.S. Department of Agriculture","ror":"https://ror.org/01na82s61"},{"id":"https://openalex.org/F4320337547","display_name":"Laboratory Directed Research and Development","ror":"https://ror.org/01e41cf67"},{"id":"https://openalex.org/F4320338304","display_name":"Los Alamos National Laboratory","ror":"https://ror.org/01e41cf67"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4379795026.pdf","grobid_xml":"https://content.openalex.org/works/W4379795026.grobid-xml"},"referenced_works_count":63,"referenced_works":["https://openalex.org/W1726806267","https://openalex.org/W1974590311","https://openalex.org/W1995385201","https://openalex.org/W1997458000","https://openalex.org/W2001636726","https://openalex.org/W2007114898","https://openalex.org/W2028596084","https://openalex.org/W2039317838","https://openalex.org/W2043103313","https://openalex.org/W2045907781","https://openalex.org/W2095713067","https://openalex.org/W2096986566","https://openalex.org/W2098432852","https://openalex.org/W2102703492","https://openalex.org/W2103081378","https://openalex.org/W2103296919","https://openalex.org/W2107772251","https://openalex.org/W2110300022","https://openalex.org/W2121111671","https://openalex.org/W2124351063","https://openalex.org/W2149853789","https://openalex.org/W2152682668","https://openalex.org/W2164641345","https://openalex.org/W2333844746","https://openalex.org/W2336203636","https://openalex.org/W2401404581","https://openalex.org/W2520355709","https://openalex.org/W2555626306","https://openalex.org/W2592244930","https://openalex.org/W2738854120","https://openalex.org/W2741611442","https://openalex.org/W2755291024","https://openalex.org/W2756198915","https://openalex.org/W2783832190","https://openalex.org/W2784214434","https://openalex.org/W2792807658","https://openalex.org/W2797101767","https://openalex.org/W2887059298","https://openalex.org/W2890324825","https://openalex.org/W2898942477","https://openalex.org/W2912241675","https://openalex.org/W2944560549","https://openalex.org/W2963699930","https://openalex.org/W2963824633","https://openalex.org/W2992015012","https://openalex.org/W2994012659","https://openalex.org/W3012760258","https://openalex.org/W3016855559","https://openalex.org/W3017072931","https://openalex.org/W3036084659","https://openalex.org/W3088303111","https://openalex.org/W3090873779","https://openalex.org/W3112601016","https://openalex.org/W3135497184","https://openalex.org/W3138205321","https://openalex.org/W3183929334","https://openalex.org/W4231510805","https://openalex.org/W4232225751","https://openalex.org/W4241576810","https://openalex.org/W4247879698","https://openalex.org/W4300687700","https://openalex.org/W4384206159","https://openalex.org/W6639619044"],"related_works":["https://openalex.org/W3107650560","https://openalex.org/W3126382579","https://openalex.org/W4317422773","https://openalex.org/W4315588616","https://openalex.org/W2810542905","https://openalex.org/W24843447","https://openalex.org/W3123667230","https://openalex.org/W4243064001","https://openalex.org/W2129350855","https://openalex.org/W2888805565"],"abstract_inverted_index":{"Interactions":[0],"between":[1,40,146,157,188],"stressed":[2,191],"organisms":[3],"and":[4,14,43,90,138,150,160,177,190],"their":[5],"microbiome":[6,87,148,159],"environments":[7],"may":[8],"provide":[9],"new":[10,130,169],"routes":[11],"for":[12,58,184],"understanding":[13],"controlling":[15],"biological":[16],"systems.":[17],"However,":[18],"microbiomes":[19,135,189],"are":[20],"a":[21,47,56,67,83,117,129,140],"form":[22],"of":[23,28,69,78,132,143],"high-dimensional":[24],"data,":[25],"with":[26],"thousands":[27],"taxa":[29],"present":[30],"in":[31,175],"any":[32],"given":[33],"sample,":[34],"which":[35,61,94],"makes":[36],"untangling":[37],"the":[38,63,76,86,101,105,147,158,161,172,186],"interaction":[39],"an":[41],"organism":[42],"its":[44],"microbial":[45,64],"environment":[46],"challenge.":[48],"Here":[49],"we":[50,95,107],"apply":[51,126],"Latent":[52],"Dirichlet":[53],"Allocation":[54],"(LDA),":[55],"technique":[57,181],"language":[59],"modeling,":[60],"decomposes":[62],"communities":[65],"into":[66,85],"set":[68],"topics":[70,111,149],"(non-mutually-exclusive":[71],"sub-communities)":[72],"that":[73,179],"compactly":[74],"represent":[75],"distribution":[77],"full":[79],"communities.":[80],"LDA":[81,110,127,180],"provides":[82],"lens":[84],"at":[88],"broad":[89],"fine-grained":[91],"taxonomic":[92],"levels,":[93],"show":[96,108],"on":[97,120,171],"two":[98],"datasets.":[99],"In":[100],"first":[102],"dataset,":[103],"from":[104,116],"literature,":[106],"how":[109],"succinctly":[112],"recapitulate":[113],"many":[114],"results":[115],"previous":[118],"study":[119],"diseased":[121],"coral":[122],"species.":[123],"We":[124],"then":[125],"to":[128],"dataset":[131],"maize":[133,176],"soil":[134],"under":[136],"drought,":[137],"find":[139],"large":[141],"number":[142],"significant":[144],"associations":[145,156],"plant":[151],"traits":[152],"as":[153,155],"well":[154],"experimental":[162],"factors,":[163],"e.g.":[164],"watering":[165],"level.":[166],"This":[167],"yields":[168],"information":[170],"plant-microbial":[173],"interactions":[174],"shows":[178],"is":[182],"useful":[183],"studying":[185],"coupling":[187],"organisms.":[192]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":2}],"updated_date":"2026-06-14T07:44:22.658603","created_date":"2025-10-10T00:00:00"}