{"id":"https://openalex.org/W4367834740","doi":"https://doi.org/10.1371/journal.pcbi.1011045","title":"Predicting partner fitness based on spatial structuring in a light-driven microbial community","display_name":"Predicting partner fitness based on spatial structuring in a light-driven microbial community","publication_year":2023,"publication_date":"2023-05-03","ids":{"openalex":"https://openalex.org/W4367834740","doi":"https://doi.org/10.1371/journal.pcbi.1011045","pmid":"https://pubmed.ncbi.nlm.nih.gov/37134119"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1011045","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1011045","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1371/journal.pcbi.1011045","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018077070","display_name":"Jonathan K. Sakkos","orcid":"https://orcid.org/0000-0002-6647-5805"},"institutions":[{"id":"https://openalex.org/I4210111179","display_name":"Michigan United","ror":"https://ror.org/0291ys696","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210111179"]},{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jonathan K. Sakkos","raw_affiliation_strings":["Plant Research Laboratory, Michigan State University, East Lansing, Michigan, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-6647-5805","affiliations":[{"raw_affiliation_string":"Plant Research Laboratory, Michigan State University, East Lansing, Michigan, United States of America","institution_ids":["https://openalex.org/I4210111179","https://openalex.org/I87216513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021471225","display_name":"Mar\u00eda Santos\u2010Merino","orcid":"https://orcid.org/0000-0002-9624-2914"},"institutions":[{"id":"https://openalex.org/I4210111179","display_name":"Michigan United","ror":"https://ror.org/0291ys696","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210111179"]},{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mar\u00eda Santos-Merino","raw_affiliation_strings":["Plant Research Laboratory, Michigan State University, East Lansing, Michigan, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-9624-2914","affiliations":[{"raw_affiliation_string":"Plant Research Laboratory, Michigan State University, East Lansing, Michigan, United States of America","institution_ids":["https://openalex.org/I4210111179","https://openalex.org/I87216513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089887473","display_name":"Emmanuel J. Kokarakis","orcid":null},"institutions":[{"id":"https://openalex.org/I4210111179","display_name":"Michigan United","ror":"https://ror.org/0291ys696","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210111179"]},{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Emmanuel J. Kokarakis","raw_affiliation_strings":["Department of Microbiology & Molecular Genetics, Michigan State University, East Lansing, Michigan, United States of America","Plant Research Laboratory, Michigan State University, East Lansing, Michigan, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Microbiology & Molecular Genetics, Michigan State University, East Lansing, Michigan, United States of America","institution_ids":["https://openalex.org/I4210111179","https://openalex.org/I87216513"]},{"raw_affiliation_string":"Plant Research Laboratory, Michigan State University, East Lansing, Michigan, United States of America","institution_ids":["https://openalex.org/I4210111179","https://openalex.org/I87216513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100387273","display_name":"Bowen Li","orcid":"https://orcid.org/0000-0002-0979-9862"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Bowen Li","raw_affiliation_strings":["School of Computing, Newcastle University, Newcastle upon Tyne, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing, Newcastle University, Newcastle upon Tyne, United Kingdom","institution_ids":["https://openalex.org/I84884186"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005091170","display_name":"Miguel Fuentes\u2010Cabrera","orcid":"https://orcid.org/0000-0001-7912-7079"},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Miguel Fuentes-Cabrera","raw_affiliation_strings":["Center for Nanophase Materials Sciences, Oak Ridge National Laboratory, Oak Ridge, Tennessee, United States of America"],"raw_orcid":"https://orcid.org/0000-0001-7912-7079","affiliations":[{"raw_affiliation_string":"Center for Nanophase Materials Sciences, Oak Ridge National Laboratory, Oak Ridge, Tennessee, United States of America","institution_ids":["https://openalex.org/I1289243028"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054022139","display_name":"Paolo Zuliani","orcid":"https://orcid.org/0000-0001-6033-5919"},"institutions":[{"id":"https://openalex.org/I861853513","display_name":"Sapienza University of Rome","ror":"https://ror.org/02be6w209","country_code":"IT","type":"education","lineage":["https://openalex.org/I861853513"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Paolo Zuliani","raw_affiliation_strings":["Dipartimento di Informatica, Universit\u00e0 di Roma \"La Sapienza\", Rome, Italy","Dipartimento di Informatica, Universit\u00e0 di Roma"],"raw_orcid":"https://orcid.org/0000-0001-6033-5919","affiliations":[{"raw_affiliation_string":"Dipartimento di Informatica, Universit\u00e0 di Roma \"La Sapienza\", Rome, Italy","institution_ids":["https://openalex.org/I861853513"]},{"raw_affiliation_string":"Dipartimento di Informatica, Universit\u00e0 di Roma","institution_ids":["https://openalex.org/I861853513"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5007719112","display_name":"Daniel C. Ducat","orcid":"https://orcid.org/0000-0002-1520-0588"},"institutions":[{"id":"https://openalex.org/I4210111179","display_name":"Michigan United","ror":"https://ror.org/0291ys696","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210111179"]},{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Daniel C. Ducat","raw_affiliation_strings":["Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, Michigan, United States of America","Plant Research Laboratory, Michigan State University, East Lansing, Michigan, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-1520-0588","affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, Michigan, United States of America","institution_ids":["https://openalex.org/I4210111179","https://openalex.org/I87216513"]},{"raw_affiliation_string":"Plant Research Laboratory, Michigan State University, East Lansing, Michigan, United States of America","institution_ids":["https://openalex.org/I4210111179","https://openalex.org/I87216513"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5007719112"],"corresponding_institution_ids":["https://openalex.org/I4210111179","https://openalex.org/I87216513"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":1.5148,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.83231319,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"19","issue":"5","first_page":"e1011045","last_page":"e1011045"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11252","display_name":"Evolutionary Game Theory and Cooperation","score":0.9896000027656555,"subfield":{"id":"https://openalex.org/subfields/3312","display_name":"Sociology and Political Science"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bioproduction","display_name":"Bioproduction","score":0.6849929094314575},{"id":"https://openalex.org/keywords/biochemical-engineering","display_name":"Biochemical engineering","score":0.6211563348770142},{"id":"https://openalex.org/keywords/flux-balance-analysis","display_name":"Flux balance analysis","score":0.5266846418380737},{"id":"https://openalex.org/keywords/microbial-consortium","display_name":"Microbial consortium","score":0.5262348055839539},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.48597252368927},{"id":"https://openalex.org/keywords/microbial-population-biology","display_name":"Microbial population biology","score":0.4551007151603699},{"id":"https://openalex.org/keywords/metabolic-engineering","display_name":"Metabolic engineering","score":0.45447832345962524},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.4475586414337158},{"id":"https://openalex.org/keywords/biomass","display_name":"Biomass (ecology)","score":0.42695823311805725},{"id":"https://openalex.org/keywords/biotechnology","display_name":"Biotechnology","score":0.36899107694625854},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3374295234680176},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.27204442024230957},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.2156411111354828},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.20106074213981628}],"concepts":[{"id":"https://openalex.org/C2779227428","wikidata":"https://www.wikidata.org/wiki/Q4915219","display_name":"Bioproduction","level":2,"score":0.6849929094314575},{"id":"https://openalex.org/C183696295","wikidata":"https://www.wikidata.org/wiki/Q2487696","display_name":"Biochemical engineering","level":1,"score":0.6211563348770142},{"id":"https://openalex.org/C167091322","wikidata":"https://www.wikidata.org/wiki/Q5463029","display_name":"Flux balance analysis","level":2,"score":0.5266846418380737},{"id":"https://openalex.org/C2777306163","wikidata":"https://www.wikidata.org/wiki/Q2986869","display_name":"Microbial consortium","level":4,"score":0.5262348055839539},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.48597252368927},{"id":"https://openalex.org/C81407943","wikidata":"https://www.wikidata.org/wiki/Q17149178","display_name":"Microbial population biology","level":3,"score":0.4551007151603699},{"id":"https://openalex.org/C6350086","wikidata":"https://www.wikidata.org/wiki/Q6822347","display_name":"Metabolic engineering","level":3,"score":0.45447832345962524},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.4475586414337158},{"id":"https://openalex.org/C115540264","wikidata":"https://www.wikidata.org/wiki/Q2945560","display_name":"Biomass (ecology)","level":2,"score":0.42695823311805725},{"id":"https://openalex.org/C150903083","wikidata":"https://www.wikidata.org/wiki/Q7108","display_name":"Biotechnology","level":1,"score":0.36899107694625854},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3374295234680176},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.27204442024230957},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.2156411111354828},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.20106074213981628},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.0},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.0},{"id":"https://openalex.org/C175605896","wikidata":"https://www.wikidata.org/wiki/Q39833","display_name":"Microorganism","level":3,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001709","descriptor_name":"Biotechnology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001709","descriptor_name":"Biotechnology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001709","descriptor_name":"Biotechnology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059013","descriptor_name":"Microbial Consortia","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059013","descriptor_name":"Microbial Consortia","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059013","descriptor_name":"Microbial Consortia","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":8,"locations":[{"id":"doi:10.1371/journal.pcbi.1011045","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1011045","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:37134119","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37134119","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10184905","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10184905","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10184905/pdf/pcbi.1011045.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:f06d6f1364be467495adaae45d5a05a8","is_oa":true,"landing_page_url":"https://doaj.org/article/f06d6f1364be467495adaae45d5a05a8","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 19, Iss 5, p e1011045 (2023)","raw_type":"article"},{"id":"pmh:oai:iris.uniroma1.it:11573/1681104","is_oa":false,"landing_page_url":"https://hdl.handle.net/11573/1681104","pdf_url":null,"source":{"id":"https://openalex.org/S4377196107","display_name":"IRIS Research product catalog (Sapienza University of Rome)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:osti.gov:1972380","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1972380","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:osti.gov:1973703","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1973703","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:osti.gov:2471975","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/2471975","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1011045","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1011045","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/2","score":0.7400000095367432,"display_name":"Zero hunger"}],"awards":[{"id":"https://openalex.org/G1205207005","display_name":null,"funder_award_id":"DE- FG02-91ER20021","funder_id":"https://openalex.org/F4320337480","funder_display_name":"Basic Energy Sciences"},{"id":"https://openalex.org/G121915436","display_name":null,"funder_award_id":"DEAC05- 00OR22725","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G1528409558","display_name":null,"funder_award_id":"No. DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G1645119126","display_name":null,"funder_award_id":"AC05-00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G203625172","display_name":null,"funder_award_id":"DE--AC05--00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G222768804","display_name":null,"funder_award_id":"DE\u2010FG02\u2010","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G2411683797","display_name":null,"funder_award_id":"DEAC05- 00OR22725","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G2482850608","display_name":"INTERDISCIPLINARY RESEARCH AND RELATED TRAINING PROGRAM IN THE PLANT SCIENCES","funder_award_id":"DEFG0291ER20021","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G2988778103","display_name":null,"funder_award_id":"DE-AC05?","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G3049477530","display_name":null,"funder_award_id":"Contract No. DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G4423657506","display_name":null,"funder_award_id":"AC05-00OR22725","funder_id":"https://openalex.org/F4320338287","funder_display_name":"Oak Ridge National Laboratory"},{"id":"https://openalex.org/G6486853205","display_name":null,"funder_award_id":"Contract No. DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320338287","funder_display_name":"Oak Ridge National Laboratory"},{"id":"https://openalex.org/G675320460","display_name":null,"funder_award_id":"De-AC05-00OR22725","funder_id":"https://openalex.org/F4320338287","funder_display_name":"Oak Ridge National Laboratory"},{"id":"https://openalex.org/G6911681599","display_name":null,"funder_award_id":"No. DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G7170416831","display_name":null,"funder_award_id":"845463","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7994157108","display_name":null,"funder_award_id":"DE-FG02-91ER20021","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G807938293","display_name":null,"funder_award_id":"DEAC05-00OR22725","funder_id":"https://openalex.org/F4320337480","funder_display_name":"Basic Energy Sciences"},{"id":"https://openalex.org/G8269158468","display_name":null,"funder_award_id":"AC05-00OR22725","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G8350393651","display_name":"INTERDISCIPLINARY RESEARCH AND RELATED TRAINING PROGRAM IN THE PLANT SCIENCES","funder_award_id":"DEFG0291ER20021","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G886155698","display_name":"INTERDISCIPLINARY RESEARCGH   PROGRAM IN THE FUNDAMENTAL    PLANT SCIENCES","funder_award_id":"FG0291ER20021","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G8906985441","display_name":null,"funder_award_id":"00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320332359","display_name":"Office of Science","ror":"https://ror.org/00mmn6b08"},{"id":"https://openalex.org/F4320337480","display_name":"Basic Energy Sciences","ror":"https://ror.org/05mg91w61"},{"id":"https://openalex.org/F4320338287","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":66,"referenced_works":["https://openalex.org/W1506023632","https://openalex.org/W1694538241","https://openalex.org/W1966996511","https://openalex.org/W1970375097","https://openalex.org/W1980537773","https://openalex.org/W1987148148","https://openalex.org/W2026860581","https://openalex.org/W2029945156","https://openalex.org/W2045805658","https://openalex.org/W2071173575","https://openalex.org/W2091100016","https://openalex.org/W2094201285","https://openalex.org/W2122836009","https://openalex.org/W2132430491","https://openalex.org/W2138835511","https://openalex.org/W2140463038","https://openalex.org/W2144683622","https://openalex.org/W2149562261","https://openalex.org/W2151096439","https://openalex.org/W2155595251","https://openalex.org/W2271840356","https://openalex.org/W2336811210","https://openalex.org/W2382100040","https://openalex.org/W2480010979","https://openalex.org/W2480077488","https://openalex.org/W2506766491","https://openalex.org/W2516204999","https://openalex.org/W2520320216","https://openalex.org/W2530710455","https://openalex.org/W2552045305","https://openalex.org/W2564319341","https://openalex.org/W2566890378","https://openalex.org/W2593395106","https://openalex.org/W2614283331","https://openalex.org/W2617261748","https://openalex.org/W2623016163","https://openalex.org/W2736712864","https://openalex.org/W2766085454","https://openalex.org/W2766549657","https://openalex.org/W2775238692","https://openalex.org/W2787070805","https://openalex.org/W2793358513","https://openalex.org/W2805865245","https://openalex.org/W2809425738","https://openalex.org/W2884755188","https://openalex.org/W2892741787","https://openalex.org/W2896654920","https://openalex.org/W2901268380","https://openalex.org/W2903216094","https://openalex.org/W2946650808","https://openalex.org/W2949808248","https://openalex.org/W2950236183","https://openalex.org/W2971439707","https://openalex.org/W2996352770","https://openalex.org/W3000624298","https://openalex.org/W3000675386","https://openalex.org/W3003257820","https://openalex.org/W3046018570","https://openalex.org/W3103145119","https://openalex.org/W3135319321","https://openalex.org/W3201073812","https://openalex.org/W3208100964","https://openalex.org/W4213435171","https://openalex.org/W4295313945","https://openalex.org/W6803520655","https://openalex.org/W6912845065"],"related_works":["https://openalex.org/W4320492055","https://openalex.org/W2885200473","https://openalex.org/W4311232369","https://openalex.org/W2912405537","https://openalex.org/W1992844569","https://openalex.org/W2946268652","https://openalex.org/W2402262832","https://openalex.org/W2549989325","https://openalex.org/W3008902961","https://openalex.org/W4400078768"],"abstract_inverted_index":{"Microbial":[0],"communities":[1],"have":[2],"vital":[3],"roles":[4],"in":[5,24,30,48],"systems":[6],"essential":[7],"to":[8,42,57,87,169,184,190,236],"human":[9],"health":[10],"and":[11,16,19,44,93,117,133,187,213,229],"agriculture,":[12],"such":[13],"as":[14],"gut":[15],"soil":[17],"microbiomes,":[18],"there":[20],"is":[21],"growing":[22],"interest":[23],"engineering":[25],"designer":[26],"consortia":[27,51,110,165,238],"for":[28,67,74,129,135,156,203],"applications":[29],"biotechnology":[31],"(e.g.,":[32],"personalized":[33],"probiotics,":[34],"bioproduction":[35],"of":[36,90,106,111,147,164,173,199,218],"high-value":[37],"products,":[38],"biosensing).":[39],"The":[40],"capacity":[41],"monitor":[43],"model":[45,105,122,183],"metabolite":[46],"exchange":[47,77],"dynamic":[49],"microbial":[50,109],"can":[52,83],"provide":[53],"foundational":[54],"information":[55],"important":[56],"understand":[58],"the":[59,88,126,144,153,161,171,177,200,216,219,225],"community":[60],"level":[61,146],"behaviors":[62],"that":[63,143,197,224],"emerge,":[64],"a":[65,96,107,181],"requirement":[66],"building":[68],"novel":[69,240],"consortia.":[70],"Where":[71],"experimental":[72,139,228],"approaches":[73,231],"monitoring":[75],"metabolic":[76],"are":[78],"technologically":[79],"challenging,":[80],"computational":[81,230],"tools":[82],"enable":[84],"greater":[85],"access":[86],"fate":[89],"both":[91],"chemicals":[92],"microbes":[94],"within":[95,176],"consortium.":[97],"In":[98,167],"this":[99],"study,":[100],"we":[101,179],"developed":[102],"an":[103],"in-silico":[104],"synthetic":[108],"sucrose-secreting":[112],"Synechococcus":[113],"elongatus":[114],"PCC":[115],"7942":[116],"Escherichia":[118],"coli":[119],"W.":[120],"Our":[121],"was":[123],"built":[124],"on":[125],"NUFEB":[127],"framework":[128],"Individual-based":[130],"Modeling":[131],"(IbM)":[132],"optimized":[134],"biological":[136],"accuracy":[137],"using":[138],"data.":[140],"We":[141,195,222],"showed":[142],"relative":[145],"sucrose":[148],"secretion":[149],"regulates":[150],"not":[151],"only":[152],"steady-state":[154],"support":[155],"heterotrophic":[157],"biomass,":[158,210],"but":[159],"also":[160],"temporal":[162],"dynamics":[163],"growth.":[166],"order":[168],"determine":[170],"importance":[172],"spatial":[174,185],"organization":[175],"consortium,":[178],"fit":[180],"regression":[182],"data":[186],"used":[188],"it":[189],"accurately":[191],"predict":[192],"colony":[193],"fitness.":[194],"found":[196],"some":[198],"critical":[201],"parameters":[202],"fitness":[204],"prediction":[205],"were":[206],"inter-colony":[207],"distance,":[208],"initial":[209],"induction":[211],"level,":[212],"distance":[214],"from":[215],"center":[217],"simulation":[220],"volume.":[221],"anticipate":[223],"synergy":[226],"between":[227],"will":[232],"improve":[233],"our":[234],"ability":[235],"design":[237],"with":[239],"function.":[241]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2}],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2025-10-10T00:00:00"}