{"id":"https://openalex.org/W4360998020","doi":"https://doi.org/10.1371/journal.pcbi.1010947","title":"Docking cholesterol to integral membrane proteins with Rosetta","display_name":"Docking cholesterol to integral membrane proteins with Rosetta","publication_year":2023,"publication_date":"2023-03-27","ids":{"openalex":"https://openalex.org/W4360998020","doi":"https://doi.org/10.1371/journal.pcbi.1010947","pmid":"https://pubmed.ncbi.nlm.nih.gov/36972273"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1010947","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010947","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010947&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010947&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5037737691","display_name":"Brennica Marlow","orcid":"https://orcid.org/0000-0002-6811-9951"},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brennica Marlow","raw_affiliation_strings":["Center for Structural Biology, Vanderbilt University, Nashville, Tennessee, United States of America","Chemical and Physical Biology Program, Vanderbilt University, Nashville, Tennessee, United States of America"],"affiliations":[{"raw_affiliation_string":"Center for Structural Biology, Vanderbilt University, Nashville, Tennessee, United States of America","institution_ids":["https://openalex.org/I200719446"]},{"raw_affiliation_string":"Chemical and Physical Biology Program, Vanderbilt University, Nashville, Tennessee, United States of America","institution_ids":["https://openalex.org/I200719446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063553649","display_name":"Georg Kuenze","orcid":"https://orcid.org/0000-0003-1799-346X"},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]},{"id":"https://openalex.org/I926574661","display_name":"Leipzig University","ror":"https://ror.org/03s7gtk40","country_code":"DE","type":"education","lineage":["https://openalex.org/I926574661"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"Georg Kuenze","raw_affiliation_strings":["Center for Structural Biology, Vanderbilt University, Nashville, Tennessee, United States of America","Department of Chemistry, Vanderbilt University, Nashville, Tennessee, United States of America","Institute for Drug Discovery, Leipzig University Medical School, Leipzig, Germany"],"affiliations":[{"raw_affiliation_string":"Center for Structural Biology, Vanderbilt University, Nashville, Tennessee, United States of America","institution_ids":["https://openalex.org/I200719446"]},{"raw_affiliation_string":"Department of Chemistry, Vanderbilt University, Nashville, Tennessee, United States of America","institution_ids":["https://openalex.org/I200719446"]},{"raw_affiliation_string":"Institute for Drug Discovery, Leipzig University Medical School, Leipzig, Germany","institution_ids":["https://openalex.org/I926574661"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025842562","display_name":"Jens Meiler","orcid":"https://orcid.org/0000-0001-8945-193X"},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]},{"id":"https://openalex.org/I926574661","display_name":"Leipzig University","ror":"https://ror.org/03s7gtk40","country_code":"DE","type":"education","lineage":["https://openalex.org/I926574661"]}],"countries":["DE","US"],"is_corresponding":true,"raw_author_name":"Jens Meiler","raw_affiliation_strings":["Center for Structural Biology, Vanderbilt University, Nashville, Tennessee, United States of America","Chemical and Physical Biology Program, Vanderbilt University, Nashville, Tennessee, United States of America","Department of Chemistry, Vanderbilt University, Nashville, Tennessee, United States of America","Institute for Drug Discovery, Leipzig University Medical School, Leipzig, Germany"],"affiliations":[{"raw_affiliation_string":"Center for Structural Biology, Vanderbilt University, Nashville, Tennessee, United States of America","institution_ids":["https://openalex.org/I200719446"]},{"raw_affiliation_string":"Chemical and Physical Biology Program, Vanderbilt University, Nashville, Tennessee, United States of America","institution_ids":["https://openalex.org/I200719446"]},{"raw_affiliation_string":"Department of Chemistry, Vanderbilt University, Nashville, Tennessee, United States of America","institution_ids":["https://openalex.org/I200719446"]},{"raw_affiliation_string":"Institute for Drug Discovery, Leipzig University Medical School, Leipzig, Germany","institution_ids":["https://openalex.org/I926574661"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006314973","display_name":"Julia Koehler Leman","orcid":"https://orcid.org/0000-0002-5693-3593"},"institutions":[{"id":"https://openalex.org/I4210107338","display_name":"Simons Foundation","ror":"https://ror.org/01cmst727","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210107338"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Julia Koehler Leman","raw_affiliation_strings":["Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, New York, United States of America"],"affiliations":[{"raw_affiliation_string":"Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, New York, United States of America","institution_ids":["https://openalex.org/I4210107338"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5006314973","https://openalex.org/A5025842562"],"corresponding_institution_ids":["https://openalex.org/I200719446","https://openalex.org/I4210107338","https://openalex.org/I926574661"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":0.7613,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.71948615,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":97},"biblio":{"volume":"19","issue":"3","first_page":"e1010947","last_page":"e1010947"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11178","display_name":"Receptor Mechanisms and Signaling","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11178","display_name":"Receptor Mechanisms and Signaling","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dock","display_name":"DOCK","score":0.894344687461853},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.6137639284133911},{"id":"https://openalex.org/keywords/cholesterol","display_name":"Cholesterol","score":0.5940911769866943},{"id":"https://openalex.org/keywords/integral-membrane-protein","display_name":"Integral membrane protein","score":0.5596625804901123},{"id":"https://openalex.org/keywords/membrane-protein","display_name":"Membrane protein","score":0.5105737447738647},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5047484636306763},{"id":"https://openalex.org/keywords/binding-site","display_name":"Binding site","score":0.45224934816360474},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.33635789155960083},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.33045411109924316},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.2898457646369934},{"id":"https://openalex.org/keywords/membrane","display_name":"Membrane","score":0.28432098031044006},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.08740532398223877}],"concepts":[{"id":"https://openalex.org/C93073132","wikidata":"https://www.wikidata.org/wiki/Q24726581","display_name":"DOCK","level":2,"score":0.894344687461853},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.6137639284133911},{"id":"https://openalex.org/C2778163477","wikidata":"https://www.wikidata.org/wiki/Q43656","display_name":"Cholesterol","level":2,"score":0.5940911769866943},{"id":"https://openalex.org/C161200384","wikidata":"https://www.wikidata.org/wiki/Q1757382","display_name":"Integral membrane protein","level":4,"score":0.5596625804901123},{"id":"https://openalex.org/C144647389","wikidata":"https://www.wikidata.org/wiki/Q423042","display_name":"Membrane protein","level":3,"score":0.5105737447738647},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5047484636306763},{"id":"https://openalex.org/C107824862","wikidata":"https://www.wikidata.org/wiki/Q616005","display_name":"Binding site","level":2,"score":0.45224934816360474},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.33635789155960083},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.33045411109924316},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.2898457646369934},{"id":"https://openalex.org/C41625074","wikidata":"https://www.wikidata.org/wiki/Q176088","display_name":"Membrane","level":2,"score":0.28432098031044006},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.08740532398223877},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008055","descriptor_name":"Lipids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008055","descriptor_name":"Lipids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008055","descriptor_name":"Lipids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008055","descriptor_name":"Lipids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1371/journal.pcbi.1010947","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010947","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010947&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:36972273","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36972273","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10042369","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10042369","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10042369/pdf/pcbi.1010947.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:add00a1800eb4d25b037fad3a0e8a498","is_oa":true,"landing_page_url":"https://doaj.org/article/add00a1800eb4d25b037fad3a0e8a498","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 19, Iss 3, p e1010947 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1010947","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010947","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010947&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.8199999928474426,"display_name":"Affordable and clean energy","id":"https://metadata.un.org/sdg/7"}],"awards":[{"id":"https://openalex.org/G1025965137","display_name":null,"funder_award_id":"R01 HL122010","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G1182699193","display_name":null,"funder_award_id":"R01 GM080403","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G1255282577","display_name":null,"funder_award_id":"HL122010","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G1264485646","display_name":null,"funder_award_id":"R01 DA046138","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G1379016709","display_name":null,"funder_award_id":"GM080403","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G145672378","display_name":null,"funder_award_id":"R01 GM080403","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G1669612976","display_name":null,"funder_award_id":"1445197","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G2026619908","display_name":null,"funder_award_id":"15213","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G2100069541","display_name":null,"funder_award_id":"DGE-1937963","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G2498637502","display_name":null,"funder_award_id":"DA046138","funder_id":"https://openalex.org/F4320337347","funder_display_name":"National Institute on Drug Abuse"},{"id":"https://openalex.org/G2669222520","display_name":null,"funder_award_id":"R01 DA046138","funder_id":"https://openalex.org/F4320337347","funder_display_name":"National Institute on Drug Abuse"},{"id":"https://openalex.org/G3307378536","display_name":null,"funder_award_id":"Fellow","funder_id":"https://openalex.org/F4320308269","funder_display_name":"Alexander von Humboldt-Stiftung"},{"id":"https://openalex.org/G4359693134","display_name":null,"funder_award_id":"NIGMS","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4659152931","display_name":null,"funder_award_id":"1445197","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4686096355","display_name":null,"funder_award_id":"SFB1423, project number 421152132","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G4994359279","display_name":null,"funder_award_id":"421152132","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G5106512922","display_name":null,"funder_award_id":"Deutsche Forschungsgemeinschaft (DFG","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G5921281487","display_name":null,"funder_award_id":"number","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6749396883","display_name":null,"funder_award_id":"SFB1423","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G6755165505","display_name":null,"funder_award_id":"award","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6894402473","display_name":null,"funder_award_id":"Fellowship","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7723841796","display_name":null,"funder_award_id":"445197","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7855596362","display_name":null,"funder_award_id":"144519","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8526424774","display_name":null,"funder_award_id":"Fellowship","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G8669874586","display_name":null,"funder_award_id":"GM080403","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G8785896504","display_name":null,"funder_award_id":"DGE-1445197","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320308269","display_name":"Alexander von Humboldt-Stiftung","ror":"https://ror.org/012kf4317"},{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337347","display_name":"National Institute on Drug Abuse","ror":"https://ror.org/00fq5cm18"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4360998020.pdf","grobid_xml":"https://content.openalex.org/works/W4360998020.grobid-xml"},"referenced_works_count":73,"referenced_works":["https://openalex.org/W41404523","https://openalex.org/W1024072833","https://openalex.org/W1507887256","https://openalex.org/W1879820513","https://openalex.org/W1968682237","https://openalex.org/W1975557054","https://openalex.org/W1976484542","https://openalex.org/W1979166300","https://openalex.org/W1979709047","https://openalex.org/W1981092702","https://openalex.org/W1985588649","https://openalex.org/W1986578251","https://openalex.org/W1995272207","https://openalex.org/W1996497759","https://openalex.org/W2009423060","https://openalex.org/W2009614301","https://openalex.org/W2034190452","https://openalex.org/W2050485582","https://openalex.org/W2051963318","https://openalex.org/W2054452104","https://openalex.org/W2055800207","https://openalex.org/W2069663555","https://openalex.org/W2070208922","https://openalex.org/W2073270298","https://openalex.org/W2082011949","https://openalex.org/W2082463787","https://openalex.org/W2083053634","https://openalex.org/W2084493621","https://openalex.org/W2085348517","https://openalex.org/W2092508662","https://openalex.org/W2096012124","https://openalex.org/W2097033237","https://openalex.org/W2098879446","https://openalex.org/W2102377211","https://openalex.org/W2102461176","https://openalex.org/W2103591844","https://openalex.org/W2103994532","https://openalex.org/W2104477830","https://openalex.org/W2104491508","https://openalex.org/W2104776612","https://openalex.org/W2105668062","https://openalex.org/W2125872855","https://openalex.org/W2130388575","https://openalex.org/W2132395520","https://openalex.org/W2133220184","https://openalex.org/W2140831051","https://openalex.org/W2148962258","https://openalex.org/W2150444353","https://openalex.org/W2152770371","https://openalex.org/W2158534713","https://openalex.org/W2163352757","https://openalex.org/W2165526004","https://openalex.org/W2168621448","https://openalex.org/W2170711116","https://openalex.org/W2210154426","https://openalex.org/W2376573086","https://openalex.org/W2510475640","https://openalex.org/W2520613901","https://openalex.org/W2593389969","https://openalex.org/W2790334126","https://openalex.org/W2914298720","https://openalex.org/W2914541321","https://openalex.org/W2921228063","https://openalex.org/W2926661588","https://openalex.org/W2950374603","https://openalex.org/W2952857611","https://openalex.org/W3011535809","https://openalex.org/W3092070807","https://openalex.org/W3121738341","https://openalex.org/W3130734118","https://openalex.org/W3169567199","https://openalex.org/W3176280402","https://openalex.org/W4281993476"],"related_works":["https://openalex.org/W4282913408","https://openalex.org/W2100436540","https://openalex.org/W2300502530","https://openalex.org/W3201417569","https://openalex.org/W3033824302","https://openalex.org/W2070163817","https://openalex.org/W2091429460","https://openalex.org/W2102475066","https://openalex.org/W2395175315","https://openalex.org/W1938743025"],"abstract_inverted_index":{"Lipid":[0],"molecules":[1,20],"such":[2],"as":[3],"cholesterol":[4,58,96,163,179],"interact":[5],"with":[6,57],"the":[7,31,35,40,44,49,65,92,128,145,157],"surface":[8],"of":[9,69,112,124,135,141,178],"integral":[10],"membrane":[11],"proteins":[12],"(IMP)":[13],"in":[14,21,43,52,55,133,156],"a":[15,22,71,87,95,104,170],"mode":[16],"different":[17],"from":[18],"drug-like":[19],"protein":[23],"binding":[24,83,164,180],"pocket.":[25],"These":[26],"differences":[27],"are":[28],"due":[29],"to":[30,59,78,90,115],"lipid":[32],"molecule's":[33],"shape,":[34],"membrane's":[36],"hydrophobic":[37],"environment,":[38],"and":[39,80,85,110,122,137,176],"lipid's":[41],"orientation":[42],"membrane.":[45],"We":[46,63,102],"can":[47],"use":[48],"recent":[50],"increase":[51],"experimental":[53,184],"structures":[54],"complex":[56],"understand":[60],"protein-cholesterol":[61,113],"interactions.":[62],"developed":[64],"RosettaCholesterol":[66,119,160],"protocol":[67,161],"consisting":[68],"(1)":[70],"prediction":[72,177],"phase":[73],"using":[74],"an":[75],"energy":[76],"grid":[77],"sample":[79],"score":[81],"native-like":[82],"poses":[84,126],"(2)":[86],"specificity":[88],"filter":[89],"calculate":[91],"likelihood":[93],"that":[94],"interaction":[97],"site":[98,165],"may":[99],"be":[100],"specific.":[101],"used":[103],"multi-pronged":[105],"benchmark":[106,142],"(self-dock,":[107],"flip-dock,":[108],"cross-dock,":[109],"global-dock)":[111],"complexes":[114],"validate":[116],"our":[117,147],"method.":[118],"improved":[120],"sampling":[121],"scoring":[123],"native":[125],"over":[127],"standard":[129],"RosettaLigand":[130],"baseline":[131],"method":[132,148],"91%":[134],"cases":[136],"performs":[138],"better":[139],"regardless":[140],"complexity.":[143],"On":[144],"\u03b22AR,":[146],"found":[149],"one":[150],"likely-specific":[151],"site,":[152],"which":[153],"is":[154],"described":[155],"literature.":[158],"The":[159],"quantifies":[162],"specificity.":[166],"Our":[167],"approach":[168],"provides":[169],"starting":[171],"point":[172],"for":[173,182],"high-throughput":[174],"modeling":[175],"sites":[181],"further":[183],"validation.":[185]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":3}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
