{"id":"https://openalex.org/W4323294508","doi":"https://doi.org/10.1371/journal.pcbi.1010921","title":"CustOmics: A versatile deep-learning based strategy for multi-omics integration","display_name":"CustOmics: A versatile deep-learning based strategy for multi-omics integration","publication_year":2023,"publication_date":"2023-03-06","ids":{"openalex":"https://openalex.org/W4323294508","doi":"https://doi.org/10.1371/journal.pcbi.1010921","pmid":"https://pubmed.ncbi.nlm.nih.gov/36877736"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1010921","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010921","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010921&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010921&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5064053038","display_name":"Hakim Benkirane","orcid":"https://orcid.org/0000-0002-1039-3878"},"institutions":[{"id":"https://openalex.org/I4210107720","display_name":"CentraleSup\u00e9lec","ror":"https://ror.org/019tcpt25","country_code":"FR","type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I4210107720"]},{"id":"https://openalex.org/I4210103698","display_name":"Centre de recherche en Epid\u00e9miologie et Sant\u00e9 des Populations","ror":"https://ror.org/01ed4t417","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I195731000","https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I4210097159","https://openalex.org/I4210097159","https://openalex.org/I4210103698","https://openalex.org/I4210164847","https://openalex.org/I4413047524"]},{"id":"https://openalex.org/I4210095243","display_name":"La Ligue Contre le Cancer","ror":"https://ror.org/00rkrv905","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I4210095243"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"funder","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4387152683","display_name":"Math\u00e9matiques et Informatique pour la Complexit\u00e9 et les Syst\u00e8mes","ror":"https://ror.org/03q29s414","country_code":null,"type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I4210107720","https://openalex.org/I4387152683"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Hakim Benkirane","raw_affiliation_strings":["Oncostat U1018, Inserm, Universit\u00e9 Paris-Saclay, \u00c9quipe Labellis\u00e9e Ligue Contre le Cancer, CESP, Villejuif, France","Universit\u00e9 Paris-Saclay, CentraleSup\u00e9lec, Lab of Mathematics and Informatics (MICS), Gif-sur-Yvette, France","MICS - Math\u00e9matiques et Informatique pour la Complexit\u00e9 et les Syst\u00e8mes (Plateau de Moulon 3 rue Joliot Curie 91192 GIF SUR YVETTE CEDEX - France)","CESP - Centre de recherche en \u00e9pid\u00e9miologie et sant\u00e9 des populations (16 avenue Paul Vaillant Couturier 94807 Villejuif Cedex, France - France)"],"affiliations":[{"raw_affiliation_string":"Oncostat U1018, Inserm, Universit\u00e9 Paris-Saclay, \u00c9quipe Labellis\u00e9e Ligue Contre le Cancer, CESP, Villejuif, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I4210103698","https://openalex.org/I4210095243","https://openalex.org/I277688954"]},{"raw_affiliation_string":"Universit\u00e9 Paris-Saclay, CentraleSup\u00e9lec, Lab of Mathematics and Informatics (MICS), Gif-sur-Yvette, France","institution_ids":["https://openalex.org/I4210107720","https://openalex.org/I277688954"]},{"raw_affiliation_string":"MICS - Math\u00e9matiques et Informatique pour la Complexit\u00e9 et les Syst\u00e8mes (Plateau de Moulon 3 rue Joliot Curie 91192 GIF SUR YVETTE CEDEX - France)","institution_ids":["https://openalex.org/I4387152683"]},{"raw_affiliation_string":"CESP - Centre de recherche en \u00e9pid\u00e9miologie et sant\u00e9 des populations (16 avenue Paul Vaillant Couturier 94807 Villejuif Cedex, France - France)","institution_ids":["https://openalex.org/I4210103698"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083215811","display_name":"Yoann Pradat","orcid":"https://orcid.org/0000-0002-4647-5779"},"institutions":[{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210107720","display_name":"CentraleSup\u00e9lec","ror":"https://ror.org/019tcpt25","country_code":"FR","type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I4210107720"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Yoann Pradat","raw_affiliation_strings":["Universit\u00e9 Paris-Saclay, CentraleSup\u00e9lec, Lab of Mathematics and Informatics (MICS), Gif-sur-Yvette, France","Universit\u00e9 Paris-Saclay (B\u00e2timent Br\u00e9guet, 3 Rue Joliot Curie 2e \u00e9t, 91190 Gif-sur-Yvette - France)"],"affiliations":[{"raw_affiliation_string":"Universit\u00e9 Paris-Saclay, CentraleSup\u00e9lec, Lab of Mathematics and Informatics (MICS), Gif-sur-Yvette, France","institution_ids":["https://openalex.org/I4210107720","https://openalex.org/I277688954"]},{"raw_affiliation_string":"Universit\u00e9 Paris-Saclay (B\u00e2timent Br\u00e9guet, 3 Rue Joliot Curie 2e \u00e9t, 91190 Gif-sur-Yvette - France)","institution_ids":["https://openalex.org/I277688954"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062814767","display_name":"Stefan Michiels","orcid":"https://orcid.org/0000-0002-6963-2968"},"institutions":[{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210103698","display_name":"Centre de recherche en Epid\u00e9miologie et Sant\u00e9 des Populations","ror":"https://ror.org/01ed4t417","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I195731000","https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I4210097159","https://openalex.org/I4210097159","https://openalex.org/I4210103698","https://openalex.org/I4210164847","https://openalex.org/I4413047524"]},{"id":"https://openalex.org/I4210095243","display_name":"La Ligue Contre le Cancer","ror":"https://ror.org/00rkrv905","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I4210095243"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"funder","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I2801843802","display_name":"Institut Gustave Roussy","ror":"https://ror.org/0321g0743","country_code":"FR","type":"facility","lineage":["https://openalex.org/I2801843802"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Stefan Michiels","raw_affiliation_strings":["Bureau de Biostatistique et d'\u00c9pid\u00e9miologie, Gustave Roussy, Universit\u00e9 Paris-Saclay, Villejuif, France","Oncostat U1018, Inserm, Universit\u00e9 Paris-Saclay, \u00c9quipe Labellis\u00e9e Ligue Contre le Cancer, CESP, Villejuif, France","IGR - Institut Gustave Roussy (114, rue \u00c9douard-Vaillant 94805 Villejuif Cedex -France - France)","CESP - Centre de recherche en \u00e9pid\u00e9miologie et sant\u00e9 des populations (16 avenue Paul Vaillant Couturier 94807 Villejuif Cedex, France - France)"],"affiliations":[{"raw_affiliation_string":"Bureau de Biostatistique et d'\u00c9pid\u00e9miologie, Gustave Roussy, Universit\u00e9 Paris-Saclay, Villejuif, France","institution_ids":["https://openalex.org/I2801843802","https://openalex.org/I277688954"]},{"raw_affiliation_string":"Oncostat U1018, Inserm, Universit\u00e9 Paris-Saclay, \u00c9quipe Labellis\u00e9e Ligue Contre le Cancer, CESP, Villejuif, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I4210103698","https://openalex.org/I4210095243","https://openalex.org/I277688954"]},{"raw_affiliation_string":"IGR - Institut Gustave Roussy (114, rue \u00c9douard-Vaillant 94805 Villejuif Cedex -France - France)","institution_ids":["https://openalex.org/I2801843802"]},{"raw_affiliation_string":"CESP - Centre de recherche en \u00e9pid\u00e9miologie et sant\u00e9 des populations (16 avenue Paul Vaillant Couturier 94807 Villejuif Cedex, France - France)","institution_ids":["https://openalex.org/I4210103698"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5048541433","display_name":"Paul-Henry Courn\u00e8de","orcid":"https://orcid.org/0000-0001-7679-6197"},"institutions":[{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210107720","display_name":"CentraleSup\u00e9lec","ror":"https://ror.org/019tcpt25","country_code":"FR","type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I4210107720"]},{"id":"https://openalex.org/I4387152683","display_name":"Math\u00e9matiques et Informatique pour la Complexit\u00e9 et les Syst\u00e8mes","ror":"https://ror.org/03q29s414","country_code":null,"type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I4210107720","https://openalex.org/I4387152683"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Paul-Henry Courn\u00e8de","raw_affiliation_strings":["Universit\u00e9 Paris-Saclay, CentraleSup\u00e9lec, Lab of Mathematics and Informatics (MICS), Gif-sur-Yvette, France","MICS - Math\u00e9matiques et Informatique pour la Complexit\u00e9 et les Syst\u00e8mes (Plateau de Moulon 3 rue Joliot Curie 91192 GIF SUR YVETTE CEDEX - France)"],"affiliations":[{"raw_affiliation_string":"Universit\u00e9 Paris-Saclay, CentraleSup\u00e9lec, Lab of Mathematics and Informatics (MICS), Gif-sur-Yvette, France","institution_ids":["https://openalex.org/I4210107720","https://openalex.org/I277688954"]},{"raw_affiliation_string":"MICS - Math\u00e9matiques et Informatique pour la Complexit\u00e9 et les Syst\u00e8mes (Plateau de Moulon 3 rue Joliot Curie 91192 GIF SUR YVETTE CEDEX - France)","institution_ids":["https://openalex.org/I4387152683"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5064053038"],"corresponding_institution_ids":["https://openalex.org/I154526488","https://openalex.org/I277688954","https://openalex.org/I4210095243","https://openalex.org/I4210103698","https://openalex.org/I4210107720","https://openalex.org/I4387152683"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":11.0305,"has_fulltext":true,"cited_by_count":70,"citation_normalized_percentile":{"value":0.98911992,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"19","issue":"3","first_page":"e1010921","last_page":"e1010921"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9842000007629395,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7320388555526733},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.6551457643508911},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.5725939273834229},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5374349355697632},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5349088907241821},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.509397566318512},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.38504379987716675},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3159496784210205}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7320388555526733},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.6551457643508911},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.5725939273834229},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5374349355697632},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5349088907241821},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.509397566318512},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.38504379987716675},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3159496784210205},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1371/journal.pcbi.1010921","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010921","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010921&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:36877736","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36877736","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:HAL:hal-04069315v1","is_oa":true,"landing_page_url":"https://hal.science/hal-04069315","pdf_url":"https://hal.science/hal-04069315/document","source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, 2023, 19 (3), &#x27E8;10.1371/journal.pcbi.1010921&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:pubmedcentral.nih.gov:10019780","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10019780","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10019780/pdf/pcbi.1010921.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"},{"id":"pmh:oai:RePEc:plo:pcbi00:1010921","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1010921","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:faf3d002e49e44edade18a444e4c5fb0","is_oa":true,"landing_page_url":"https://doaj.org/article/faf3d002e49e44edade18a444e4c5fb0","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 19, Iss 3, p e1010921 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1010921","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010921","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010921&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4110391279","display_name":null,"funder_award_id":"project,","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G4432323768","display_name":null,"funder_award_id":"ANR-18-IBHU-0002","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G6876561401","display_name":null,"funder_award_id":"ANR-18","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4323294508.pdf","grobid_xml":"https://content.openalex.org/works/W4323294508.grobid-xml"},"referenced_works_count":48,"referenced_works":["https://openalex.org/W1986546598","https://openalex.org/W2021561902","https://openalex.org/W2022401242","https://openalex.org/W2061239067","https://openalex.org/W2084139018","https://openalex.org/W2095705004","https://openalex.org/W2095763169","https://openalex.org/W2100714130","https://openalex.org/W2108191052","https://openalex.org/W2109761160","https://openalex.org/W2131241448","https://openalex.org/W2163922914","https://openalex.org/W2264481086","https://openalex.org/W2487770199","https://openalex.org/W2521492299","https://openalex.org/W2585516946","https://openalex.org/W2612690371","https://openalex.org/W2753919178","https://openalex.org/W2766736793","https://openalex.org/W2810986024","https://openalex.org/W2884682196","https://openalex.org/W2889326414","https://openalex.org/W2921485464","https://openalex.org/W2922815614","https://openalex.org/W2951209146","https://openalex.org/W2967844557","https://openalex.org/W2996227376","https://openalex.org/W3002480603","https://openalex.org/W3037738062","https://openalex.org/W3085172652","https://openalex.org/W3100495486","https://openalex.org/W3102943483","https://openalex.org/W3120515035","https://openalex.org/W3131923610","https://openalex.org/W3138022488","https://openalex.org/W3155404242","https://openalex.org/W3160663717","https://openalex.org/W3164535579","https://openalex.org/W3173875945","https://openalex.org/W3176016422","https://openalex.org/W3176966473","https://openalex.org/W3183862858","https://openalex.org/W3195201018","https://openalex.org/W4212774754","https://openalex.org/W4250857377","https://openalex.org/W4283799942","https://openalex.org/W4312066528","https://openalex.org/W6798500288"],"related_works":["https://openalex.org/W4375867731","https://openalex.org/W2611989081","https://openalex.org/W2731899572","https://openalex.org/W4230611425","https://openalex.org/W4294635752","https://openalex.org/W4304166257","https://openalex.org/W4383066092","https://openalex.org/W3215138031","https://openalex.org/W2804383999","https://openalex.org/W4380075502"],"abstract_inverted_index":{"The":[0],"availability":[1],"of":[2,8,36,127,144,170,186,207,221],"patient":[3],"cohorts":[4],"with":[5,28,214],"several":[6,180],"types":[7,188],"omics":[9,160],"data":[10,41,100],"opens":[11],"new":[12,29,80],"perspectives":[13,60],"for":[14,61,174,179],"exploring":[15],"the":[16,47,70,91,96,108,129,142,168,171,184,204,222],"disease's":[17],"underlying":[18],"biological":[19],"processes":[20],"and":[21,39,52,77,189,217],"developing":[22],"predictive":[23],"models.":[24],"It":[25],"also":[26],"comes":[27],"challenges":[30],"in":[31,34,42,107,154],"computational":[32],"biology":[33],"terms":[35],"integrating":[37,62],"high-dimensional":[38],"heterogeneous":[40],"a":[43,79,87,155],"fashion":[44],"that":[45,120],"captures":[46],"interrelationships":[48],"between":[49],"multiple":[50,159],"genes":[51],"their":[53],"functions.":[54],"Deep":[55],"learning":[56,104],"methods":[57],"offer":[58],"promising":[59],"multi-omics":[63],"data.":[64],"In":[65,90],"this":[66,121],"paper,":[67],"we":[68,94,118,166],"review":[69],"existing":[71],"integration":[72],"strategies":[73],"based":[74],"on":[75,86,176,210,229],"autoencoders":[76],"propose":[78],"customizable":[81],"one":[82],"whose":[83],"principle":[84],"relies":[85],"two-phase":[88],"approach.":[89],"first":[92],"phase,":[93],"adapt":[95],"training":[97],"to":[98,141],"each":[99,115],"source":[101],"independently":[102],"before":[103],"cross-modality":[105],"interactions":[106],"second":[109],"phase.":[110],"By":[111],"taking":[112,125],"into":[113],"account":[114],"source's":[116],"singularity,":[117],"show":[119,200],"approach":[122],"succeeds":[123],"at":[124],"advantage":[126],"all":[128],"sources":[130,161],"more":[131],"efficiently":[132],"than":[133],"other":[134],"strategies.":[135],"Moreover,":[136],"by":[137],"adapting":[138],"our":[139,148,202,208],"architecture":[140,209],"computation":[143],"Shapley":[145],"additive":[146],"explanations,":[147],"model":[149],"can":[150],"provide":[151,218],"interpretable":[152],"results":[153,223],"multi-source":[156],"setting.":[157],"Using":[158],"from":[162],"different":[163,212],"TCGA":[164],"cohorts,":[165],"demonstrate":[167],"performance":[169],"proposed":[172],"method":[173],"cancer":[175,191],"test":[177],"cases":[178],"tasks,":[181],"such":[182],"as":[183,193,195],"classification":[185],"tumor":[187],"breast":[190],"subtypes,":[192],"well":[194],"survival":[196],"outcome":[197],"prediction.":[198],"We":[199],"through":[201],"experiments":[203],"great":[205],"performances":[206],"seven":[211],"datasets":[213],"various":[215],"sizes":[216],"some":[219],"interpretations":[220],"obtained.":[224],"Our":[225],"code":[226],"is":[227],"available":[228],"(https://github.com/HakimBenkirane/CustOmics).":[230]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":35},{"year":2024,"cited_by_count":25},{"year":2023,"cited_by_count":6}],"updated_date":"2026-03-12T08:34:05.389933","created_date":"2025-10-10T00:00:00"}
