{"id":"https://openalex.org/W4318955517","doi":"https://doi.org/10.1371/journal.pcbi.1010874","title":"Funneling modulatory peptide design with generative models: Discovery and characterization of disruptors of calcineurin protein-protein interactions","display_name":"Funneling modulatory peptide design with generative models: Discovery and characterization of disruptors of calcineurin protein-protein interactions","publication_year":2023,"publication_date":"2023-02-02","ids":{"openalex":"https://openalex.org/W4318955517","doi":"https://doi.org/10.1371/journal.pcbi.1010874","pmid":"https://pubmed.ncbi.nlm.nih.gov/36730443"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1010874","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010874","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1371/journal.pcbi.1010874","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006981663","display_name":"J\u00e9r\u00f4me Tubiana","orcid":"https://orcid.org/0000-0001-8878-5620"},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]}],"countries":["IL"],"is_corresponding":true,"raw_author_name":"J\u00e9r\u00f4me Tubiana","raw_affiliation_strings":["Blavatnik School of Computer Science, Tel Aviv University, Tel Aviv, Israel"],"affiliations":[{"raw_affiliation_string":"Blavatnik School of Computer Science, Tel Aviv University, Tel Aviv, Israel","institution_ids":["https://openalex.org/I16391192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110958411","display_name":"Lucia Adriana-Lifshits","orcid":null},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]}],"countries":["IL"],"is_corresponding":true,"raw_author_name":"Lucia Adriana-Lifshits","raw_affiliation_strings":["Department of Oral Biology, The Goldschleger School of Dental Medicine, Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel"],"affiliations":[{"raw_affiliation_string":"Department of Oral Biology, The Goldschleger School of Dental Medicine, Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel","institution_ids":["https://openalex.org/I16391192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010765645","display_name":"Michael Nissan","orcid":"https://orcid.org/0000-0002-8796-2370"},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]}],"countries":["IL"],"is_corresponding":true,"raw_author_name":"Michael Nissan","raw_affiliation_strings":["Blavatnik School of Computer Science, Tel Aviv University, Tel Aviv, Israel"],"affiliations":[{"raw_affiliation_string":"Blavatnik School of Computer Science, Tel Aviv University, Tel Aviv, Israel","institution_ids":["https://openalex.org/I16391192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002949917","display_name":"Matan Gabay","orcid":"https://orcid.org/0009-0007-7946-9969"},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]}],"countries":["IL"],"is_corresponding":true,"raw_author_name":"Matan Gabay","raw_affiliation_strings":["Department of Oral Biology, The Goldschleger School of Dental Medicine, Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel"],"affiliations":[{"raw_affiliation_string":"Department of Oral Biology, The Goldschleger School of Dental Medicine, Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel","institution_ids":["https://openalex.org/I16391192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050820937","display_name":"Inbal Sher","orcid":"https://orcid.org/0009-0002-8546-7840"},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]}],"countries":["IL"],"is_corresponding":true,"raw_author_name":"Inbal Sher","raw_affiliation_strings":["Department of Oral Biology, The Goldschleger School of Dental Medicine, Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel"],"affiliations":[{"raw_affiliation_string":"Department of Oral Biology, The Goldschleger School of Dental Medicine, Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel","institution_ids":["https://openalex.org/I16391192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063614239","display_name":"Marina Sova","orcid":null},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]}],"countries":["IL"],"is_corresponding":true,"raw_author_name":"Marina Sova","raw_affiliation_strings":["Department of Oral Biology, The Goldschleger School of Dental Medicine, Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel"],"affiliations":[{"raw_affiliation_string":"Department of Oral Biology, The Goldschleger School of Dental Medicine, Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel","institution_ids":["https://openalex.org/I16391192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030975599","display_name":"Haim J. Wolfson","orcid":"https://orcid.org/0000-0002-7600-2702"},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]}],"countries":["IL"],"is_corresponding":true,"raw_author_name":"Haim J. Wolfson","raw_affiliation_strings":["Blavatnik School of Computer Science, Tel Aviv University, Tel Aviv, Israel"],"affiliations":[{"raw_affiliation_string":"Blavatnik School of Computer Science, Tel Aviv University, Tel Aviv, Israel","institution_ids":["https://openalex.org/I16391192"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5059825514","display_name":"Maayan Gal","orcid":"https://orcid.org/0000-0003-3668-8647"},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]}],"countries":["IL"],"is_corresponding":true,"raw_author_name":"Maayan Gal","raw_affiliation_strings":["Department of Oral Biology, The Goldschleger School of Dental Medicine, Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel"],"affiliations":[{"raw_affiliation_string":"Department of Oral Biology, The Goldschleger School of Dental Medicine, Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel","institution_ids":["https://openalex.org/I16391192"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5002949917","https://openalex.org/A5006981663","https://openalex.org/A5010765645","https://openalex.org/A5030975599","https://openalex.org/A5050820937","https://openalex.org/A5059825514","https://openalex.org/A5063614239","https://openalex.org/A5110958411"],"corresponding_institution_ids":["https://openalex.org/I16391192"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":1.4209,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.80808977,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"19","issue":"2","first_page":"e1010874","last_page":"e1010874"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12620","display_name":"Signaling Pathways in Disease","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12620","display_name":"Signaling Pathways in Disease","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.986299991607666,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13326","display_name":"Biochemical and Structural Characterization","score":0.9850000143051147,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/calcineurin","display_name":"Calcineurin","score":0.6711744666099548},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5896475911140442},{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.508342444896698},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.4374263882637024},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.42314282059669495},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.3631291091442108},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.33837705850601196},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.12787261605262756}],"concepts":[{"id":"https://openalex.org/C128057223","wikidata":"https://www.wikidata.org/wiki/Q420566","display_name":"Calcineurin","level":3,"score":0.6711744666099548},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5896475911140442},{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.508342444896698},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.4374263882637024},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.42314282059669495},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.3631291091442108},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.33837705850601196},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.12787261605262756},{"id":"https://openalex.org/C2911091166","wikidata":"https://www.wikidata.org/wiki/Q106419912","display_name":"Transplantation","level":2,"score":0.0},{"id":"https://openalex.org/C141071460","wikidata":"https://www.wikidata.org/wiki/Q40821","display_name":"Surgery","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019703","descriptor_name":"Calcineurin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D019703","descriptor_name":"Calcineurin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D019703","descriptor_name":"Calcineurin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D019703","descriptor_name":"Calcineurin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D019703","descriptor_name":"Calcineurin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D019703","descriptor_name":"Calcineurin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D019703","descriptor_name":"Calcineurin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D019703","descriptor_name":"Calcineurin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D019703","descriptor_name":"Calcineurin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D019703","descriptor_name":"Calcineurin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D019703","descriptor_name":"Calcineurin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D019703","descriptor_name":"Calcineurin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1371/journal.pcbi.1010874","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010874","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:36730443","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36730443","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9928118","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9928118","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC9928118/pdf/pcbi.1010874.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:5d1591ca5d284bbcae28a5fd134a7ad8","is_oa":true,"landing_page_url":"https://doaj.org/article/5d1591ca5d284bbcae28a5fd134a7ad8","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 19, Iss 2, p e1010874 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1010874","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010874","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G8410759139","display_name":null,"funder_award_id":"/","funder_id":"https://openalex.org/F4320312914","funder_display_name":"Blavatnik Family Foundation"},{"id":"https://openalex.org/G920064975","display_name":null,"funder_award_id":"LT001058/2019-C","funder_id":"https://openalex.org/F4320307846","funder_display_name":"Human Frontier Science Program"}],"funders":[{"id":"https://openalex.org/F4320307846","display_name":"Human Frontier Science Program","ror":"https://ror.org/02ebx7v45"},{"id":"https://openalex.org/F4320312914","display_name":"Blavatnik Family Foundation","ror":null},{"id":"https://openalex.org/F4320322596","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":96,"referenced_works":["https://openalex.org/W1567627398","https://openalex.org/W1607931568","https://openalex.org/W1973571124","https://openalex.org/W1977730145","https://openalex.org/W1982007696","https://openalex.org/W1993591356","https://openalex.org/W2016005076","https://openalex.org/W2019884262","https://openalex.org/W2023272942","https://openalex.org/W2028211858","https://openalex.org/W2032554524","https://openalex.org/W2036145275","https://openalex.org/W2039074309","https://openalex.org/W2086141071","https://openalex.org/W2090515645","https://openalex.org/W2106091801","https://openalex.org/W2109604654","https://openalex.org/W2112391609","https://openalex.org/W2120764353","https://openalex.org/W2137621165","https://openalex.org/W2140707292","https://openalex.org/W2157973267","https://openalex.org/W2171641243","https://openalex.org/W2193177440","https://openalex.org/W2265106521","https://openalex.org/W2325296456","https://openalex.org/W2326350727","https://openalex.org/W2329592726","https://openalex.org/W2343443025","https://openalex.org/W2395175315","https://openalex.org/W2470360319","https://openalex.org/W2556341799","https://openalex.org/W2564158871","https://openalex.org/W2589664514","https://openalex.org/W2590025134","https://openalex.org/W2590125722","https://openalex.org/W2590537260","https://openalex.org/W2593641128","https://openalex.org/W2626204035","https://openalex.org/W2792034759","https://openalex.org/W2793312545","https://openalex.org/W2802224083","https://openalex.org/W2903283865","https://openalex.org/W2914341699","https://openalex.org/W2952059807","https://openalex.org/W2957473820","https://openalex.org/W2963640180","https://openalex.org/W2964446216","https://openalex.org/W2972411752","https://openalex.org/W2980007617","https://openalex.org/W2981629619","https://openalex.org/W2999040249","https://openalex.org/W3014133106","https://openalex.org/W3033417435","https://openalex.org/W3039427866","https://openalex.org/W3042076923","https://openalex.org/W3042130878","https://openalex.org/W3044778276","https://openalex.org/W3087769169","https://openalex.org/W3100043476","https://openalex.org/W3100163799","https://openalex.org/W3104051198","https://openalex.org/W3126683889","https://openalex.org/W3132323068","https://openalex.org/W3135130381","https://openalex.org/W3135181189","https://openalex.org/W3144239152","https://openalex.org/W3154275519","https://openalex.org/W3156428263","https://openalex.org/W3160453752","https://openalex.org/W3163970098","https://openalex.org/W3166108653","https://openalex.org/W3172509480","https://openalex.org/W3183151898","https://openalex.org/W3211186415","https://openalex.org/W4200091796","https://openalex.org/W4211196614","https://openalex.org/W4220765272","https://openalex.org/W4223950755","https://openalex.org/W4224053046","https://openalex.org/W4224997394","https://openalex.org/W4225335692","https://openalex.org/W4229031603","https://openalex.org/W4248853693","https://openalex.org/W4280550947","https://openalex.org/W4281263660","https://openalex.org/W4281626490","https://openalex.org/W4286567102","https://openalex.org/W4293819961","https://openalex.org/W4296032638","https://openalex.org/W4297779993","https://openalex.org/W4319061788","https://openalex.org/W4328112733","https://openalex.org/W4366823175","https://openalex.org/W6810563569","https://openalex.org/W6838847336"],"related_works":["https://openalex.org/W2035061372","https://openalex.org/W2099982459","https://openalex.org/W2109298101","https://openalex.org/W2007507741","https://openalex.org/W2159860826","https://openalex.org/W3192210502","https://openalex.org/W1981737222","https://openalex.org/W1569394480","https://openalex.org/W4390876228","https://openalex.org/W1998222399"],"abstract_inverted_index":{"Design":[0],"of":[1,20,29,40,53,96,146,212,235],"peptide":[2,110],"binders":[3],"is":[4,139],"an":[5,21,160],"attractive":[6],"strategy":[7],"for":[8,62,88],"targeting":[9],"\"undruggable\"":[10],"protein-protein":[11,237],"interfaces.":[12],"Current":[13],"design":[14,75,111],"protocols":[15,46],"rely":[16],"on":[17,83,171],"the":[18,30,54,103,210,233],"extraction":[19],"initial":[22],"sequence":[23,56,205,223],"from":[24,201],"one":[25],"known":[26],"protein":[27,91,98,175,220],"interactor":[28],"target":[31],"protein,":[32],"followed":[33],"by":[34,129],"in-silico":[35,74],"or":[36],"in-vitro":[37,161],"mutagenesis-based":[38],"optimization":[39],"its":[41,215],"binding":[42,85,127,163,211],"affinity.":[43],"Wet":[44],"lab":[45],"can":[47],"explore":[48],"only":[49],"a":[50,89,109,118,134,173,187],"minor":[51],"portion":[52],"vast":[55],"space":[57],"and":[58,70,80,131,141,159,167,184,222,229],"cannot":[59],"efficiently":[60],"screen":[61],"other":[63],"desirable":[64],"properties":[65],"such":[66],"as":[67],"high":[68],"specificity":[69],"low":[71],"toxicity,":[72],"while":[73],"requires":[76],"intensive":[77],"computational":[78],"resources":[79],"often":[81],"relies":[82],"simplified":[84],"models.":[86],"Yet,":[87],"multivalent":[90],"target,":[92],"dozens":[93],"to":[94,143,198,214],"hundreds":[95,145],"natural":[97,126,204],"partners":[99],"already":[100],"exist":[101],"in":[102,178,182],"cellular":[104,180],"environment.":[105],"Here,":[106],"we":[107,191],"describe":[108],"protocol":[112,170],"that":[113,206],"harnesses":[114],"this":[115],"diversity":[116],"via":[117,155],"machine":[119],"learning":[120],"generative":[121,225],"model.":[122],"After":[123],"identifying":[124],"putative":[125],"fragments":[128],"literature":[130],"homology":[132],"search,":[133],"compositional":[135],"Restricted":[136],"Boltzmann":[137],"Machine":[138],"trained":[140],"sampled":[142],"yield":[144],"diverse":[147],"candidate":[148],"peptides.":[149],"The":[150],"latter":[151],"are":[152],"further":[153],"filtered":[154],"flexible":[156],"molecular":[157,227],"docking":[158,228],"microchip-based":[162],"assay.":[164],"We":[165],"validate":[166],"test":[168],"our":[169],"calcineurin,":[172],"calcium-dependent":[174],"phosphatase":[176],"involved":[177],"various":[179],"pathways":[181],"health":[183],"disease.":[185],"In":[186,217],"single":[188],"screening":[189],"round,":[190],"identified":[192],"multiple":[193],"16-length":[194],"peptides":[195],"with":[196,209],"up":[197],"six":[199],"mutations":[200],"their":[202],"closest":[203],"successfully":[207],"interfere":[208],"calcineurin":[213],"substrates.":[216],"summary,":[218],"integrating":[219],"interaction":[221,230,238],"databases,":[224],"modeling,":[226],"assays":[231],"enables":[232],"discovery":[234],"novel":[236],"modulators.":[239]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":1}],"updated_date":"2026-03-11T14:59:36.786465","created_date":"2025-10-10T00:00:00"}
