{"id":"https://openalex.org/W4314949678","doi":"https://doi.org/10.1371/journal.pcbi.1010743","title":"Interspecific comparison of gene expression profiles using machine learning","display_name":"Interspecific comparison of gene expression profiles using machine learning","publication_year":2023,"publication_date":"2023-01-10","ids":{"openalex":"https://openalex.org/W4314949678","doi":"https://doi.org/10.1371/journal.pcbi.1010743","pmid":"https://pubmed.ncbi.nlm.nih.gov/36626392"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1010743","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010743","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010743&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010743&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5013428161","display_name":"Artem S. Kasianov","orcid":"https://orcid.org/0000-0001-8086-392X"},"institutions":[{"id":"https://openalex.org/I4210107660","display_name":"Institute for Information Transmission Problems","ror":"https://ror.org/013w2d378","country_code":"RU","type":"facility","lineage":["https://openalex.org/I4210107660"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Artem S. Kasianov","raw_affiliation_strings":["Institute for Information Transmission Problems of the Russian Academy of Sciences, Moscow, Russia"],"raw_orcid":"https://orcid.org/0000-0001-8086-392X","affiliations":[{"raw_affiliation_string":"Institute for Information Transmission Problems of the Russian Academy of Sciences, Moscow, Russia","institution_ids":["https://openalex.org/I4210107660"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046531528","display_name":"Anna V. Klepikova","orcid":"https://orcid.org/0000-0001-6459-2170"},"institutions":[{"id":"https://openalex.org/I4210107660","display_name":"Institute for Information Transmission Problems","ror":"https://ror.org/013w2d378","country_code":"RU","type":"facility","lineage":["https://openalex.org/I4210107660"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Anna V. Klepikova","raw_affiliation_strings":["Institute for Information Transmission Problems of the Russian Academy of Sciences, Moscow, Russia"],"raw_orcid":"https://orcid.org/0000-0001-6459-2170","affiliations":[{"raw_affiliation_string":"Institute for Information Transmission Problems of the Russian Academy of Sciences, Moscow, Russia","institution_ids":["https://openalex.org/I4210107660"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065316858","display_name":"Alexey V. Mayorov","orcid":"https://orcid.org/0000-0003-2955-8473"},"institutions":[{"id":"https://openalex.org/I4210107660","display_name":"Institute for Information Transmission Problems","ror":"https://ror.org/013w2d378","country_code":"RU","type":"facility","lineage":["https://openalex.org/I4210107660"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Alexey V. Mayorov","raw_affiliation_strings":["Institute for Information Transmission Problems of the Russian Academy of Sciences, Moscow, Russia"],"raw_orcid":"https://orcid.org/0000-0003-2955-8473","affiliations":[{"raw_affiliation_string":"Institute for Information Transmission Problems of the Russian Academy of Sciences, Moscow, Russia","institution_ids":["https://openalex.org/I4210107660"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005610888","display_name":"Gleb S. Buzanov","orcid":null},"institutions":[{"id":"https://openalex.org/I153845743","display_name":"Moscow Institute of Physics and Technology","ror":"https://ror.org/00v0z9322","country_code":"RU","type":"education","lineage":["https://openalex.org/I153845743"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Gleb S. Buzanov","raw_affiliation_strings":["Moscow Institute of Physics and Technology, Moscow, Russia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Moscow Institute of Physics and Technology, Moscow, Russia","institution_ids":["https://openalex.org/I153845743"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033657711","display_name":"Maria D. Logacheva","orcid":"https://orcid.org/0000-0002-8940-0400"},"institutions":[{"id":"https://openalex.org/I125989756","display_name":"Skolkovo Institute of Science and Technology","ror":"https://ror.org/03f9nc143","country_code":"RU","type":"education","lineage":["https://openalex.org/I125989756"]},{"id":"https://openalex.org/I4210107660","display_name":"Institute for Information Transmission Problems","ror":"https://ror.org/013w2d378","country_code":"RU","type":"facility","lineage":["https://openalex.org/I4210107660"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Maria D. Logacheva","raw_affiliation_strings":["Institute for Information Transmission Problems of the Russian Academy of Sciences, Moscow, Russia","Skolkovo Institute of Science and Technology, Moscow, Russia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Information Transmission Problems of the Russian Academy of Sciences, Moscow, Russia","institution_ids":["https://openalex.org/I4210107660"]},{"raw_affiliation_string":"Skolkovo Institute of Science and Technology, Moscow, Russia","institution_ids":["https://openalex.org/I125989756"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076540728","display_name":"Aleksey A. Penin","orcid":"https://orcid.org/0000-0002-9057-3974"},"institutions":[{"id":"https://openalex.org/I4210107660","display_name":"Institute for Information Transmission Problems","ror":"https://ror.org/013w2d378","country_code":"RU","type":"facility","lineage":["https://openalex.org/I4210107660"]}],"countries":["RU"],"is_corresponding":true,"raw_author_name":"Aleksey A. Penin","raw_affiliation_strings":["Institute for Information Transmission Problems of the Russian Academy of Sciences, Moscow, Russia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Information Transmission Problems of the Russian Academy of Sciences, Moscow, Russia","institution_ids":["https://openalex.org/I4210107660"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5076540728"],"corresponding_institution_ids":["https://openalex.org/I4210107660"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":0.4637,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.56265137,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":97},"biblio":{"volume":"19","issue":"1","first_page":"e1010743","last_page":"e1010743"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9872000217437744,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9761999845504761,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interspecific-competition","display_name":"Interspecific competition","score":0.7155750393867493},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.5755868554115295},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5266406536102295},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5013787746429443},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.4808124303817749},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.45521870255470276},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.36321645975112915},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3421996533870697},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.33381468057632446},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.25997278094291687},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.2540064752101898}],"concepts":[{"id":"https://openalex.org/C63644423","wikidata":"https://www.wikidata.org/wiki/Q338562","display_name":"Interspecific competition","level":2,"score":0.7155750393867493},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.5755868554115295},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5266406536102295},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5013787746429443},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.4808124303817749},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.45521870255470276},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.36321645975112915},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3421996533870697},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.33381468057632446},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.25997278094291687},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2540064752101898}],"mesh":[{"descriptor_ui":"D003313","descriptor_name":"Zea mays","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003313","descriptor_name":"Zea mays","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003313","descriptor_name":"Zea mays","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D018506","descriptor_name":"Gene Expression Regulation, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018506","descriptor_name":"Gene Expression Regulation, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018506","descriptor_name":"Gene Expression Regulation, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1371/journal.pcbi.1010743","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010743","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010743&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:36626392","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36626392","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9879537","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9879537","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC9879537/pdf/pcbi.1010743.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"},{"id":"pmh:oai:RePEc:plo:pcbi00:1010743","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1010743","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:7d52097cb6b1405681baa2bb793995f2","is_oa":true,"landing_page_url":"https://doaj.org/article/7d52097cb6b1405681baa2bb793995f2","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 19, Iss 1, p e1010743 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1010743","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010743","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010743&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.6200000047683716,"display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G1161846219","display_name":null,"funder_award_id":"17-14-01315","funder_id":"https://openalex.org/F4320324099","funder_display_name":"Russian Science Foundation"},{"id":"https://openalex.org/G2127925898","display_name":null,"funder_award_id":"17-14-","funder_id":"https://openalex.org/F4320324099","funder_display_name":"Russian Science Foundation"},{"id":"https://openalex.org/G6552033120","display_name":null,"funder_award_id":"075-15-2021-1064","funder_id":"https://openalex.org/F4320327494","funder_display_name":"Ministry of Science and Higher Education of the Russian Federation"},{"id":"https://openalex.org/G8523758477","display_name":null,"funder_award_id":"075-15-2021-1064","funder_id":"https://openalex.org/F4320324099","funder_display_name":"Russian Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320324099","display_name":"Russian Science Foundation","ror":"https://ror.org/03y2gwe85"},{"id":"https://openalex.org/F4320327494","display_name":"Ministry of Science and Higher Education of the Russian Federation","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4314949678.pdf","grobid_xml":"https://content.openalex.org/works/W4314949678.grobid-xml"},"referenced_works_count":56,"referenced_works":["https://openalex.org/W1524954604","https://openalex.org/W1893617572","https://openalex.org/W1944267146","https://openalex.org/W1964511579","https://openalex.org/W1968637495","https://openalex.org/W1979835060","https://openalex.org/W2000297641","https://openalex.org/W2026363819","https://openalex.org/W2084214748","https://openalex.org/W2088187175","https://openalex.org/W2101351842","https://openalex.org/W2130353827","https://openalex.org/W2145100181","https://openalex.org/W2149640650","https://openalex.org/W2152239989","https://openalex.org/W2152379610","https://openalex.org/W2152810365","https://openalex.org/W2157900320","https://openalex.org/W2169456326","https://openalex.org/W2174301063","https://openalex.org/W2295598076","https://openalex.org/W2316262244","https://openalex.org/W2336835708","https://openalex.org/W2421155267","https://openalex.org/W2481072561","https://openalex.org/W2513390929","https://openalex.org/W2593890490","https://openalex.org/W2598034909","https://openalex.org/W2615416461","https://openalex.org/W2737026266","https://openalex.org/W2773326374","https://openalex.org/W2790102940","https://openalex.org/W2793855015","https://openalex.org/W2804013691","https://openalex.org/W2909494053","https://openalex.org/W2911194630","https://openalex.org/W2914769190","https://openalex.org/W2917084170","https://openalex.org/W2949439482","https://openalex.org/W2950847261","https://openalex.org/W2951942625","https://openalex.org/W2954492537","https://openalex.org/W2971081724","https://openalex.org/W2980499598","https://openalex.org/W2981792167","https://openalex.org/W2988396470","https://openalex.org/W2996140569","https://openalex.org/W3004293435","https://openalex.org/W3043232254","https://openalex.org/W3092581425","https://openalex.org/W3125528398","https://openalex.org/W3136195778","https://openalex.org/W3200136860","https://openalex.org/W4214514396","https://openalex.org/W4214561629","https://openalex.org/W4241478281"],"related_works":["https://openalex.org/W4318263826","https://openalex.org/W2806630626","https://openalex.org/W2510245873","https://openalex.org/W2085341779","https://openalex.org/W2361786859","https://openalex.org/W2352349849","https://openalex.org/W4212836520","https://openalex.org/W1533512865","https://openalex.org/W2376593158","https://openalex.org/W2811105108"],"abstract_inverted_index":{"Interspecific":[0],"gene":[1,68,104,126],"comparisons":[2],"are":[3,13,30,59,171],"the":[4,17,33,44,72,79,123,159,189,194],"keystones":[5],"for":[6,16,55,77,102,133,141],"many":[7],"areas":[8],"of":[9,19,36,48,74,81,92,125,149,156,186,192],"biological":[10],"research":[11],"and":[12,42,66,165,198],"especially":[14,53],"important":[15,26],"translation":[18],"knowledge":[20],"from":[21,122],"model":[22,160],"organisms":[23],"to":[24,108],"economically":[25],"species.":[27,85],"Currently":[28],"they":[29],"hampered":[31],"by":[32,43,61],"low":[34],"resolution":[35],"methods":[37,76],"based":[38],"on":[39,112,118],"sequence":[40,113],"analysis":[41],"complex":[45],"evolutionary":[46],"history":[47],"eukaryotic":[49],"genes.":[50],"This":[51,70],"is":[52,139],"critical":[54],"plants,":[56],"whose":[57],"genomes":[58],"shaped":[60],"multiple":[62],"whole":[63],"genome":[64],"duplications":[65],"subsequent":[67],"loss.":[69],"requires":[71],"development":[73],"new":[75],"comparing":[78],"functions":[80],"genes":[82],"in":[83,183],"different":[84],"Here,":[86],"we":[87,151],"report":[88],"ISEEML":[89],"(Interspecific":[90],"Similarity":[91],"Expression":[93],"Evaluated":[94],"using":[95],"Machine":[96],"Learning)-a":[97],"novel":[98,131],"machine":[99],"learning-based":[100],"algorithm":[101,116],"interspecific":[103],"classification.":[105],"In":[106],"contrast":[107],"previous":[109],"studies":[110],"focused":[111],"similarity,":[114],"our":[115],"focuses":[117],"functional":[119],"similarity":[120],"inferred":[121],"comparison":[124],"expression":[127,134],"profiles.":[128],"We":[129],"propose":[130],"metrics":[132],"pattern":[135],"similarity-expression":[136],"score":[137],"(ES)-that":[138],"suitable":[140],"species":[142,172],"with":[143],"differing":[144],"morphologies.":[145],"As":[146],"a":[147],"proof":[148],"concept,":[150],"compare":[152],"detailed":[153],"transcriptome":[154],"maps":[155],"Arabidopsis":[157],"thaliana,":[158],"species,":[161],"Zea":[162],"mays":[163],"(maize)":[164],"Fagopyrum":[166],"esculentum":[167],"(common":[168],"buckwheat),":[169],"which":[170],"that":[173],"represent":[174],"distant":[175],"clades":[176],"within":[177],"flowering":[178],"plants.":[179],"The":[180],"classifier":[181],"resulted":[182],"an":[184],"AUC":[185],"0.91;":[187],"under":[188],"ES":[190],"threshold":[191],"0.5,":[193],"specificity":[195],"was":[196,200],"94%,":[197],"sensitivity":[199],"72%.":[201]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3}],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2025-10-10T00:00:00"}
