{"id":"https://openalex.org/W4311607405","doi":"https://doi.org/10.1371/journal.pcbi.1010705","title":"Ten simple rules and a template for creating workflows-as-applications","display_name":"Ten simple rules and a template for creating workflows-as-applications","publication_year":2022,"publication_date":"2022-12-15","ids":{"openalex":"https://openalex.org/W4311607405","doi":"https://doi.org/10.1371/journal.pcbi.1010705","pmid":"https://pubmed.ncbi.nlm.nih.gov/36520686"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1010705","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010705","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010705&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010705&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5026598479","display_name":"Michael J. Roach","orcid":"https://orcid.org/0000-0003-1488-5148"},"institutions":[{"id":"https://openalex.org/I169541294","display_name":"Flinders University","ror":"https://ror.org/01kpzv902","country_code":"AU","type":"education","lineage":["https://openalex.org/I169541294"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Michael J. Roach","raw_affiliation_strings":["Flinders Accelerator for Microbiome Exploration, Flinders University, Adelaide, South Australia, Australia"],"affiliations":[{"raw_affiliation_string":"Flinders Accelerator for Microbiome Exploration, Flinders University, Adelaide, South Australia, Australia","institution_ids":["https://openalex.org/I169541294"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048361007","display_name":"N. Tessa Pierce\u2010Ward","orcid":"https://orcid.org/0000-0002-2942-5331"},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"N. Tessa Pierce-Ward","raw_affiliation_strings":["Department of Population Health and Reproduction, University of California, Davis, California, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Population Health and Reproduction, University of California, Davis, California, United States of America","institution_ids":["https://openalex.org/I84218800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068225528","display_name":"Rados\u0142aw Suchecki","orcid":"https://orcid.org/0000-0003-4992-9497"},"institutions":[{"id":"https://openalex.org/I1292875679","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07","country_code":"AU","type":"government","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I4210138055","display_name":"Agriculture and Food","ror":"https://ror.org/03n17ds51","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4210138055","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Radoslaw Suchecki","raw_affiliation_strings":["CSIRO Agriculture and Food, Urrbrae, South Australia, Australia"],"affiliations":[{"raw_affiliation_string":"CSIRO Agriculture and Food, Urrbrae, South Australia, Australia","institution_ids":["https://openalex.org/I1292875679","https://openalex.org/I4210138055"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019627096","display_name":"Vijini Mallawaarachchi","orcid":"https://orcid.org/0000-0002-2651-8719"},"institutions":[{"id":"https://openalex.org/I169541294","display_name":"Flinders University","ror":"https://ror.org/01kpzv902","country_code":"AU","type":"education","lineage":["https://openalex.org/I169541294"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Vijini Mallawaarachchi","raw_affiliation_strings":["Flinders Accelerator for Microbiome Exploration, Flinders University, Adelaide, South Australia, Australia"],"affiliations":[{"raw_affiliation_string":"Flinders Accelerator for Microbiome Exploration, Flinders University, Adelaide, South Australia, Australia","institution_ids":["https://openalex.org/I169541294"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030692926","display_name":"Bhavya Papudeshi","orcid":"https://orcid.org/0000-0001-5359-3100"},"institutions":[{"id":"https://openalex.org/I169541294","display_name":"Flinders University","ror":"https://ror.org/01kpzv902","country_code":"AU","type":"education","lineage":["https://openalex.org/I169541294"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Bhavya Papudeshi","raw_affiliation_strings":["Flinders Accelerator for Microbiome Exploration, Flinders University, Adelaide, South Australia, Australia"],"affiliations":[{"raw_affiliation_string":"Flinders Accelerator for Microbiome Exploration, Flinders University, Adelaide, South Australia, Australia","institution_ids":["https://openalex.org/I169541294"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029821714","display_name":"Scott A. Handley","orcid":"https://orcid.org/0000-0002-2143-6570"},"institutions":[{"id":"https://openalex.org/I204465549","display_name":"Washington University in St. Louis","ror":"https://ror.org/01yc7t268","country_code":"US","type":"education","lineage":["https://openalex.org/I204465549"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Scott A. Handley","raw_affiliation_strings":["Department of Pathology & Immunology, Washington University School of Medicine, St. Louis, Missouri, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Pathology & Immunology, Washington University School of Medicine, St. Louis, Missouri, United States of America","institution_ids":["https://openalex.org/I204465549"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036229691","display_name":"C. Titus Brown","orcid":"https://orcid.org/0000-0001-6001-2677"},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"C. Titus Brown","raw_affiliation_strings":["Department of Population Health and Reproduction, University of California, Davis, California, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Population Health and Reproduction, University of California, Davis, California, United States of America","institution_ids":["https://openalex.org/I84218800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088788062","display_name":"Nathan S. Watson\u2010Haigh","orcid":"https://orcid.org/0000-0002-7935-6151"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Nathan S. Watson-Haigh","raw_affiliation_strings":["Alkahest Inc., San Carlos, California, United States of America"],"affiliations":[{"raw_affiliation_string":"Alkahest Inc., San Carlos, California, United States of America","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036802114","display_name":"Robert A. Edwards","orcid":"https://orcid.org/0000-0001-8383-8949"},"institutions":[{"id":"https://openalex.org/I169541294","display_name":"Flinders University","ror":"https://ror.org/01kpzv902","country_code":"AU","type":"education","lineage":["https://openalex.org/I169541294"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Robert A. Edwards","raw_affiliation_strings":["Flinders Accelerator for Microbiome Exploration, Flinders University, Adelaide, South Australia, Australia"],"affiliations":[{"raw_affiliation_string":"Flinders Accelerator for Microbiome Exploration, Flinders University, Adelaide, South Australia, Australia","institution_ids":["https://openalex.org/I169541294"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5026598479"],"corresponding_institution_ids":["https://openalex.org/I169541294"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":13.0077,"has_fulltext":true,"cited_by_count":29,"citation_normalized_percentile":{"value":0.98137793,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":100},"biblio":{"volume":"18","issue":"12","first_page":"e1010705","last_page":"e1010705"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9749000072479248,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.9125423431396484},{"id":"https://openalex.org/keywords/workflow-management-system","display_name":"Workflow management system","score":0.7952677011489868},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7333386540412903},{"id":"https://openalex.org/keywords/workflow-technology","display_name":"Workflow technology","score":0.7287982702255249},{"id":"https://openalex.org/keywords/workflow-engine","display_name":"Workflow engine","score":0.6792015433311462},{"id":"https://openalex.org/keywords/scripting-language","display_name":"Scripting language","score":0.6630182862281799},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.5339673161506653},{"id":"https://openalex.org/keywords/windows-workflow-foundation","display_name":"Windows Workflow Foundation","score":0.521600604057312},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.5086706280708313},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.4882934093475342},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.48250913619995117},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4243926405906677},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.41983726620674133},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.2688109576702118},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.2034429907798767}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.9125423431396484},{"id":"https://openalex.org/C140824633","wikidata":"https://www.wikidata.org/wiki/Q2808660","display_name":"Workflow management system","level":3,"score":0.7952677011489868},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7333386540412903},{"id":"https://openalex.org/C19612761","wikidata":"https://www.wikidata.org/wiki/Q8034836","display_name":"Workflow technology","level":3,"score":0.7287982702255249},{"id":"https://openalex.org/C188220564","wikidata":"https://www.wikidata.org/wiki/Q3325097","display_name":"Workflow engine","level":3,"score":0.6792015433311462},{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.6630182862281799},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.5339673161506653},{"id":"https://openalex.org/C163888707","wikidata":"https://www.wikidata.org/wiki/Q1154450","display_name":"Windows Workflow Foundation","level":4,"score":0.521600604057312},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.5086706280708313},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.4882934093475342},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.48250913619995117},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4243926405906677},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.41983726620674133},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.2688109576702118},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.2034429907798767}],"mesh":[{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1371/journal.pcbi.1010705","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010705","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010705&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:36520686","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36520686","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:digitalcommons.wustl.edu:oa_4-1890","is_oa":true,"landing_page_url":"https://digitalcommons.wustl.edu/oa_4/902","pdf_url":null,"source":{"id":"https://openalex.org/S4306400764","display_name":"Digital Commons@Becker (Washington University School of Medicine)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I204465549","host_organization_name":"Washington University in St. Louis","host_organization_lineage":["https://openalex.org/I204465549"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"2020-Current year OA Pubs","raw_type":"text"},{"id":"pmh:oai:doaj.org/article:cf26512e554040fca590f5ebab4a6f0a","is_oa":true,"landing_page_url":"https://doaj.org/article/cf26512e554040fca590f5ebab4a6f0a","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 18, Iss 12, p e1010705 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9754251","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9754251","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1010705","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010705","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010705&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G197008112","display_name":null,"funder_award_id":"NIDDK","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3349938402","display_name":null,"funder_award_id":"RC2DK116713","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3497591915","display_name":null,"funder_award_id":"(NIH)","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5082183861","display_name":null,"funder_award_id":"Impact Seed Funding for Early Career Researchers","funder_id":"https://openalex.org/F4320320977","funder_display_name":"Flinders University"},{"id":"https://openalex.org/G510100752","display_name":null,"funder_award_id":"RC2DK116713","funder_id":"https://openalex.org/F4320337357","funder_display_name":"National Institute of Diabetes and Digestive and Kidney Diseases"},{"id":"https://openalex.org/G5211754784","display_name":null,"funder_award_id":"DP220102915","funder_id":"https://openalex.org/F4320334704","funder_display_name":"Australian Research Council"},{"id":"https://openalex.org/G611870384","display_name":null,"funder_award_id":"grant","funder_id":"https://openalex.org/F4320334704","funder_display_name":"Australian Research Council"},{"id":"https://openalex.org/G6267851547","display_name":null,"funder_award_id":"GBMF4551","funder_id":"https://openalex.org/F4320306202","funder_display_name":"Gordon and Betty Moore Foundation"},{"id":"https://openalex.org/G8194482869","display_name":null,"funder_award_id":"2018911","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8527935422","display_name":null,"funder_award_id":"102915","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8690263794","display_name":null,"funder_award_id":"DK116713","funder_id":"https://openalex.org/F4320337357","funder_display_name":"National Institute of Diabetes and Digestive and Kidney Diseases"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306202","display_name":"Gordon and Betty Moore Foundation","ror":"https://ror.org/006wxqw41"},{"id":"https://openalex.org/F4320320977","display_name":"Flinders University","ror":"https://ror.org/01kpzv902"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320334704","display_name":"Australian Research Council","ror":"https://ror.org/05mmh0f86"},{"id":"https://openalex.org/F4320337357","display_name":"National Institute of Diabetes and Digestive and Kidney Diseases","ror":"https://ror.org/00adh9b73"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4311607405.pdf","grobid_xml":"https://content.openalex.org/works/W4311607405.grobid-xml"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W162146565","https://openalex.org/W2073217525","https://openalex.org/W2110417468","https://openalex.org/W2123100726","https://openalex.org/W2302501749","https://openalex.org/W2470052926","https://openalex.org/W2534699084","https://openalex.org/W2538143681","https://openalex.org/W2539403003","https://openalex.org/W2605897695","https://openalex.org/W2625117623","https://openalex.org/W2765745983","https://openalex.org/W2886443342","https://openalex.org/W2950354111","https://openalex.org/W2971928433","https://openalex.org/W2984194625","https://openalex.org/W3007075333","https://openalex.org/W3029928583","https://openalex.org/W3036934263","https://openalex.org/W3039380610","https://openalex.org/W3040417797","https://openalex.org/W3047916956","https://openalex.org/W3127656915","https://openalex.org/W3174427011","https://openalex.org/W3200776886","https://openalex.org/W3210107071","https://openalex.org/W4220662761","https://openalex.org/W4280546292"],"related_works":["https://openalex.org/W2373541195","https://openalex.org/W2376410910","https://openalex.org/W2091596831","https://openalex.org/W2166163080","https://openalex.org/W291310304","https://openalex.org/W2374818432","https://openalex.org/W2365658322","https://openalex.org/W2379425324","https://openalex.org/W2028407054","https://openalex.org/W329008868"],"abstract_inverted_index":{"As":[0],"bioinformatics":[1,114],"analyses":[2],"increase":[3],"in":[4,82],"size":[5],"and":[6,34,45,78,85,172,181,185],"complexity,":[7],"workflow":[8,35,59,95,133,148,183],"managers":[9,25,36,96],"are":[10,118],"becoming":[11],"more":[12],"popular":[13],"for":[14,58,64,107,120,169],"building":[15],"pipelines":[16,31],"Workflow":[17,24],"managers,":[18,134],"such":[19,41],"as":[20,42],"Snakemake":[21],"[4],":[22],"Nextflow":[23],"enable":[26],"non-bioinformaticians":[27],"to":[28],"run":[29],"published":[30],"with":[32,37],"confidence,":[33],"graphical":[38],"user":[39,177],"interfaces":[40],"Galaxy":[43],"[8]":[44],"BioWorkflow":[46],"[9]":[47],"have":[48,61],"helped":[49,87],"nonbioinformaticians":[50],"create":[51],"their":[52,89],"own":[53],"simple":[54],"pipelines.":[55],"Earlier":[56],"tools":[57,117,144,153],"management":[60],"been":[62],"around":[63],"a":[65,121,147,160],"while,":[66],"including":[67],"GNU":[68],"Make,":[69],"ruffus":[70],"[10],":[71],"doit":[72],"However,":[73],"the":[74,99,130,165,170,174,182,190],"integration":[75],"of":[76,94,123,132,141,156],"cluster":[77],"cloud":[79],"computing":[80],"support":[81],"Snakemake,":[83],"Nextflow,":[84],"Cromwell":[86],"drive":[88],"current":[90],"popularity.":[91],"The":[92],"use":[93],"facilitates":[97],"following":[98],"FAIR":[100],"(Findable,":[101],"Accessible,":[102],"Interoperable,":[103],"Reusable)":[104],"guiding":[105],"principles":[106],"open":[108],"scientific":[109],"research":[110],"Interestingly,":[111],"many":[112],"existing":[113],"command":[115,142,166,178],"line":[116,143,167,179],"wrappers":[119],"series":[122],"other":[124],"software,":[125],"but":[126],"since":[127],"that":[128],"is":[129],"goal":[131],"they":[135],"can":[136],"be":[137],"used":[138],"instead.":[139],"Examples":[140],"built":[145],"on":[146],"manager":[149],"include":[150],"Hecatomb":[151],"These":[152],"all":[154],"consist":[155],"two":[157],"key":[158],"components:":[159],"convenience":[161],"launcher,":[162],"which":[163,188],"provides":[164],"interface":[168],"tool":[171],"compiles":[173],"configuration":[175],"from":[176],"arguments,":[180],"pipeline":[184],"associated":[186],"files,":[187],"performs":[189],"actual":[191],"analysis.":[192]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":16},{"year":2023,"cited_by_count":10}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
