{"id":"https://openalex.org/W4306896927","doi":"https://doi.org/10.1371/journal.pcbi.1010641","title":"Global and gene-specific translational regulation in Escherichia coli across different conditions","display_name":"Global and gene-specific translational regulation in Escherichia coli across different conditions","publication_year":2022,"publication_date":"2022-10-20","ids":{"openalex":"https://openalex.org/W4306896927","doi":"https://doi.org/10.1371/journal.pcbi.1010641","pmid":"https://pubmed.ncbi.nlm.nih.gov/36264977"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1010641","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010641","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1371/journal.pcbi.1010641","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100366379","display_name":"Di Zhang","orcid":"https://orcid.org/0000-0001-8978-2130"},"institutions":[{"id":"https://openalex.org/I4210160507","display_name":"Center for Life Sciences","ror":"https://ror.org/05kje8j93","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570","https://openalex.org/I4210160507","https://openalex.org/I99065089"]},{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Di Zhang","raw_affiliation_strings":["Center for Quantitative Biology, Academy for Advanced Interdisciplinary Studies, Peking University, Beijing, China","Peking-Tsinghua Center for Life Sciences, Academy for Advanced Interdisciplinary Studies, Peking University, Beijing, China"],"affiliations":[{"raw_affiliation_string":"Center for Quantitative Biology, Academy for Advanced Interdisciplinary Studies, Peking University, Beijing, China","institution_ids":["https://openalex.org/I20231570"]},{"raw_affiliation_string":"Peking-Tsinghua Center for Life Sciences, Academy for Advanced Interdisciplinary Studies, Peking University, Beijing, China","institution_ids":["https://openalex.org/I4210160507","https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084221138","display_name":"Hsin\u2010Jung Li","orcid":"https://orcid.org/0000-0001-8972-6921"},"institutions":[{"id":"https://openalex.org/I20089843","display_name":"Princeton University","ror":"https://ror.org/00hx57361","country_code":"US","type":"education","lineage":["https://openalex.org/I20089843"]},{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH","US"],"is_corresponding":false,"raw_author_name":"Sophia Hsin-Jung Li","raw_affiliation_strings":["Department of Molecular Biology, Princeton University, Princeton, New Jersey, United States of America","Global Health Institute, School of Life Sciences, Swiss Federal Institute of Technology Lausanne, Lausanne, Switzerland","Institute of Bioengineering, School of Life Sciences, Swiss Federal Institute of Technology Lausanne, Lausanne, Switzerland"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Biology, Princeton University, Princeton, New Jersey, United States of America","institution_ids":["https://openalex.org/I20089843"]},{"raw_affiliation_string":"Global Health Institute, School of Life Sciences, Swiss Federal Institute of Technology Lausanne, Lausanne, Switzerland","institution_ids":["https://openalex.org/I5124864"]},{"raw_affiliation_string":"Institute of Bioengineering, School of Life Sciences, Swiss Federal Institute of Technology Lausanne, Lausanne, Switzerland","institution_ids":["https://openalex.org/I5124864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043140894","display_name":"Christopher King","orcid":"https://orcid.org/0000-0001-5892-2487"},"institutions":[{"id":"https://openalex.org/I20089843","display_name":"Princeton University","ror":"https://ror.org/00hx57361","country_code":"US","type":"education","lineage":["https://openalex.org/I20089843"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christopher G. King","raw_affiliation_strings":["Department of Molecular Biology, Princeton University, Princeton, New Jersey, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Biology, Princeton University, Princeton, New Jersey, United States of America","institution_ids":["https://openalex.org/I20089843"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071133192","display_name":"Ned S. Wingreen","orcid":"https://orcid.org/0000-0001-7384-2821"},"institutions":[{"id":"https://openalex.org/I20089843","display_name":"Princeton University","ror":"https://ror.org/00hx57361","country_code":"US","type":"education","lineage":["https://openalex.org/I20089843"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ned S. Wingreen","raw_affiliation_strings":["Department of Molecular Biology, Princeton University, Princeton, New Jersey, United States of America","Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Biology, Princeton University, Princeton, New Jersey, United States of America","institution_ids":["https://openalex.org/I20089843"]},{"raw_affiliation_string":"Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey, United States of America","institution_ids":["https://openalex.org/I20089843"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001696670","display_name":"Zemer Gitai","orcid":"https://orcid.org/0000-0002-3280-6178"},"institutions":[{"id":"https://openalex.org/I20089843","display_name":"Princeton University","ror":"https://ror.org/00hx57361","country_code":"US","type":"education","lineage":["https://openalex.org/I20089843"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Zemer Gitai","raw_affiliation_strings":["Department of Molecular Biology, Princeton University, Princeton, New Jersey, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Biology, Princeton University, Princeton, New Jersey, United States of America","institution_ids":["https://openalex.org/I20089843"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100337921","display_name":"Zhiyuan Li","orcid":"https://orcid.org/0000-0001-6662-2636"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]},{"id":"https://openalex.org/I4210160507","display_name":"Center for Life Sciences","ror":"https://ror.org/05kje8j93","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570","https://openalex.org/I4210160507","https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zhiyuan Li","raw_affiliation_strings":["Center for Quantitative Biology, Academy for Advanced Interdisciplinary Studies, Peking University, Beijing, China","Peking-Tsinghua Center for Life Sciences, Academy for Advanced Interdisciplinary Studies, Peking University, Beijing, China"],"affiliations":[{"raw_affiliation_string":"Center for Quantitative Biology, Academy for Advanced Interdisciplinary Studies, Peking University, Beijing, China","institution_ids":["https://openalex.org/I20231570"]},{"raw_affiliation_string":"Peking-Tsinghua Center for Life Sciences, Academy for Advanced Interdisciplinary Studies, Peking University, Beijing, China","institution_ids":["https://openalex.org/I4210160507","https://openalex.org/I20231570"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5001696670","https://openalex.org/A5071133192","https://openalex.org/A5100337921"],"corresponding_institution_ids":["https://openalex.org/I20089843","https://openalex.org/I20231570","https://openalex.org/I4210160507"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":2.0799,"has_fulltext":false,"cited_by_count":25,"citation_normalized_percentile":{"value":0.87827343,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"18","issue":"10","first_page":"e1010641","last_page":"e1010641"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/translational-regulation","display_name":"Translational regulation","score":0.777401328086853},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7284978628158569},{"id":"https://openalex.org/keywords/translational-efficiency","display_name":"Translational efficiency","score":0.7092838883399963},{"id":"https://openalex.org/keywords/translation","display_name":"Translation (biology)","score":0.6671186685562134},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6627418994903564},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5695676803588867},{"id":"https://openalex.org/keywords/messenger-rna","display_name":"Messenger RNA","score":0.5405605435371399},{"id":"https://openalex.org/keywords/regulation-of-gene-expression","display_name":"Regulation of gene expression","score":0.5172718167304993},{"id":"https://openalex.org/keywords/escherichia-coli","display_name":"Escherichia coli","score":0.505355179309845},{"id":"https://openalex.org/keywords/codon-usage-bias","display_name":"Codon usage bias","score":0.4857978820800781},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.4485420882701874},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.4449213445186615},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4448702335357666},{"id":"https://openalex.org/keywords/protein-biosynthesis","display_name":"Protein biosynthesis","score":0.4277753233909607},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.34929537773132324}],"concepts":[{"id":"https://openalex.org/C39685955","wikidata":"https://www.wikidata.org/wiki/Q3455905","display_name":"Translational regulation","level":5,"score":0.777401328086853},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7284978628158569},{"id":"https://openalex.org/C2775992057","wikidata":"https://www.wikidata.org/wiki/Q16956568","display_name":"Translational efficiency","level":5,"score":0.7092838883399963},{"id":"https://openalex.org/C149364088","wikidata":"https://www.wikidata.org/wiki/Q185917","display_name":"Translation (biology)","level":4,"score":0.6671186685562134},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6627418994903564},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5695676803588867},{"id":"https://openalex.org/C105580179","wikidata":"https://www.wikidata.org/wiki/Q188928","display_name":"Messenger RNA","level":3,"score":0.5405605435371399},{"id":"https://openalex.org/C165864922","wikidata":"https://www.wikidata.org/wiki/Q411391","display_name":"Regulation of gene expression","level":3,"score":0.5172718167304993},{"id":"https://openalex.org/C547475151","wikidata":"https://www.wikidata.org/wiki/Q25419","display_name":"Escherichia coli","level":3,"score":0.505355179309845},{"id":"https://openalex.org/C87253356","wikidata":"https://www.wikidata.org/wiki/Q1106472","display_name":"Codon usage bias","level":4,"score":0.4857978820800781},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.4485420882701874},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.4449213445186615},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4448702335357666},{"id":"https://openalex.org/C3675279","wikidata":"https://www.wikidata.org/wiki/Q211935","display_name":"Protein biosynthesis","level":2,"score":0.4277753233909607},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.34929537773132324}],"mesh":[{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014176","descriptor_name":"Protein Biosynthesis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014176","descriptor_name":"Protein Biosynthesis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014176","descriptor_name":"Protein Biosynthesis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014176","descriptor_name":"Protein Biosynthesis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D029968","descriptor_name":"Escherichia coli Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D029968","descriptor_name":"Escherichia coli Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D029968","descriptor_name":"Escherichia coli Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D029968","descriptor_name":"Escherichia coli Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1371/journal.pcbi.1010641","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010641","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:36264977","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36264977","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:doaj.org/article:b8cc06ba9d944432806c54c5d69a6577","is_oa":true,"landing_page_url":"https://doaj.org/article/b8cc06ba9d944432806c54c5d69a6577","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 18, Iss 10, p e1010641 (2022)","raw_type":"article"},{"id":"pmh:oai:infoscience.epfl.ch:300467","is_oa":true,"landing_page_url":"https://infoscience.epfl.ch/handle/20.500.14299/195224","pdf_url":null,"source":{"id":"https://openalex.org/S4306400487","display_name":"Infoscience (Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"research article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9624429","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9624429","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1010641","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010641","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5299999713897705,"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G1231421488","display_name":null,"funder_award_id":"under","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1436049641","display_name":null,"funder_award_id":"GM082938","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3102754676","display_name":null,"funder_award_id":"DP1AI124669","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3241809954","display_name":null,"funder_award_id":"1734030","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3280662447","display_name":null,"funder_award_id":"32071255","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3979408880","display_name":null,"funder_award_id":"GM08293","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5812093873","display_name":null,"funder_award_id":"PHY-1734030","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5921281487","display_name":null,"funder_award_id":"number","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6770437020","display_name":null,"funder_award_id":"PHY-1734030","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7415471491","display_name":null,"funder_award_id":"R01 GM082938","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306085","display_name":"U.S. Department of Health and Human Services","ror":"https://ror.org/033jnv181"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":91,"referenced_works":["https://openalex.org/W171083801","https://openalex.org/W653567887","https://openalex.org/W1522784715","https://openalex.org/W1564329878","https://openalex.org/W1959135841","https://openalex.org/W1971453673","https://openalex.org/W1979834847","https://openalex.org/W1981473906","https://openalex.org/W1983525543","https://openalex.org/W1985161570","https://openalex.org/W1985933912","https://openalex.org/W1986813185","https://openalex.org/W1987854005","https://openalex.org/W1989378353","https://openalex.org/W2004700171","https://openalex.org/W2015721386","https://openalex.org/W2025445920","https://openalex.org/W2025569664","https://openalex.org/W2035618305","https://openalex.org/W2036099201","https://openalex.org/W2044463066","https://openalex.org/W2051167924","https://openalex.org/W2052652877","https://openalex.org/W2061659241","https://openalex.org/W2063779182","https://openalex.org/W2064441783","https://openalex.org/W2067258168","https://openalex.org/W2071656832","https://openalex.org/W2079517684","https://openalex.org/W2080128277","https://openalex.org/W2085280324","https://openalex.org/W2092035637","https://openalex.org/W2093417734","https://openalex.org/W2100762672","https://openalex.org/W2100908594","https://openalex.org/W2102754515","https://openalex.org/W2103441770","https://openalex.org/W2104808495","https://openalex.org/W2111481396","https://openalex.org/W2111967267","https://openalex.org/W2112515372","https://openalex.org/W2113934702","https://openalex.org/W2122860350","https://openalex.org/W2131994638","https://openalex.org/W2140862285","https://openalex.org/W2144527124","https://openalex.org/W2148342439","https://openalex.org/W2152607628","https://openalex.org/W2154827128","https://openalex.org/W2159482845","https://openalex.org/W2166516091","https://openalex.org/W2167133210","https://openalex.org/W2259283565","https://openalex.org/W2327011266","https://openalex.org/W2340761255","https://openalex.org/W2346143774","https://openalex.org/W2400939208","https://openalex.org/W2529618070","https://openalex.org/W2549510288","https://openalex.org/W2549536905","https://openalex.org/W2583817197","https://openalex.org/W2597816781","https://openalex.org/W2668393602","https://openalex.org/W2749577531","https://openalex.org/W2756246582","https://openalex.org/W2761621941","https://openalex.org/W2768349795","https://openalex.org/W2772196916","https://openalex.org/W2782738830","https://openalex.org/W2803275252","https://openalex.org/W2883474940","https://openalex.org/W2890219238","https://openalex.org/W2906608530","https://openalex.org/W2911964244","https://openalex.org/W2940534716","https://openalex.org/W2945902794","https://openalex.org/W2975907391","https://openalex.org/W2983889514","https://openalex.org/W2990685616","https://openalex.org/W2995107466","https://openalex.org/W3006336422","https://openalex.org/W3033907609","https://openalex.org/W3041575067","https://openalex.org/W3081339927","https://openalex.org/W3092369472","https://openalex.org/W3116367124","https://openalex.org/W3121031440","https://openalex.org/W3165074360","https://openalex.org/W4247053599","https://openalex.org/W4252682576","https://openalex.org/W4294216483"],"related_works":["https://openalex.org/W2093095095","https://openalex.org/W1969374117","https://openalex.org/W2595978746","https://openalex.org/W2906798543","https://openalex.org/W2151102421","https://openalex.org/W2887582884","https://openalex.org/W2123637623","https://openalex.org/W1501966284","https://openalex.org/W1966726499","https://openalex.org/W3201726795"],"abstract_inverted_index":{"How":[0],"well":[1],"mRNA":[2,19,44],"transcript":[3],"levels":[4],"represent":[5],"protein":[6,21,47],"abundances":[7],"has":[8],"been":[9],"a":[10,81,120,130,147,183],"controversial":[11],"issue.":[12],"Particularly":[13],"across":[14,74,77],"different":[15,63,164],"environments,":[16],"correlations":[17],"between":[18,43],"and":[20,46,56,76,98,166],"exhibit":[22],"remarkable":[23],"variability":[24,133,139],"from":[25],"gene":[26],"to":[27,33,41,93,113,141],"gene.":[28],"Translational":[29],"regulation":[30,162],"is":[31],"likely":[32],"be":[34,142],"one":[35],"of":[36,83,146,150,160,173],"the":[37,70,151,158,171],"key":[38],"factors":[39],"contributing":[40],"mismatches":[42],"level":[45],"abundance":[48],"in":[49,65,91,134,175],"bacteria.":[50],"Here,":[51],"we":[52,79,103],"quantified":[53],"genome-wide":[54],"transcriptome":[55],"relative":[57],"translation":[58,109,135,174],"efficiency":[59],"(RTE)":[60],"under":[61,163],"12":[62],"conditions":[64],"Escherichia":[66],"coli.":[67],"By":[68],"quantifying":[69],"mRNA-RTE":[71],"correlation":[72],"both":[73],"genes":[75,107],"conditions,":[78],"uncovered":[80],"diversity":[82],"gene-specific":[84],"translational":[85,114,161],"regulations,":[86,90],"cooperating":[87],"with":[88],"transcriptional":[89],"response":[92],"carbon":[94],"(C),":[95],"nitrogen":[96],"(N),":[97],"phosphate":[99],"(P)":[100],"limitations.":[101,154],"Intriguingly,":[102],"found":[104],"that":[105,125],"many":[106],"regulating":[108],"are":[110],"themselves":[111],"subject":[112],"regulation,":[115],"suggesting":[116],"possible":[117],"feedbacks.":[118],"Furthermore,":[119],"random":[121],"forest":[122],"model":[123],"suggests":[124],"codon":[126],"usage":[127],"partially":[128],"predicts":[129],"gene's":[131],"cross-condition":[132,138],"efficiency;":[136],"such":[137],"tends":[140],"an":[143],"inherent":[144],"quality":[145],"gene,":[148],"independent":[149],"specific":[152],"nutrient":[153],"These":[155],"findings":[156],"broaden":[157],"understanding":[159],"environments":[165],"provide":[167],"novel":[168],"strategies":[169],"for":[170,185],"control":[172],"synthetic":[176],"biology.":[177],"In":[178],"addition,":[179],"our":[180],"data":[181],"offers":[182],"resource":[184],"future":[186],"multi-omics":[187],"studies.":[188]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":11},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":4}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
