{"id":"https://openalex.org/W4307715468","doi":"https://doi.org/10.1371/journal.pcbi.1010624","title":"Optimal sequence-based design for multi-antigen HIV-1 vaccines using minimally distant antigens","display_name":"Optimal sequence-based design for multi-antigen HIV-1 vaccines using minimally distant antigens","publication_year":2022,"publication_date":"2022-10-31","ids":{"openalex":"https://openalex.org/W4307715468","doi":"https://doi.org/10.1371/journal.pcbi.1010624","pmid":"https://pubmed.ncbi.nlm.nih.gov/36315492"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1010624","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010624","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1371/journal.pcbi.1010624","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5061342418","display_name":"\u00c9ric Lewitus","orcid":"https://orcid.org/0000-0001-6459-2437"},"institutions":[{"id":"https://openalex.org/I1280259254","display_name":"Henry M. Jackson Foundation","ror":"https://ror.org/04q9tew83","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1280259254"]},{"id":"https://openalex.org/I92664306","display_name":"Walter Reed Army Institute of Research","ror":"https://ror.org/0145znz58","country_code":"US","type":"government","lineage":["https://openalex.org/I106965489","https://openalex.org/I1304082316","https://openalex.org/I1330347796","https://openalex.org/I2802581893","https://openalex.org/I92664306"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eric Lewitus","raw_affiliation_strings":["Henry M. Jackson Foundation for the Advancement of Military Medicine, Inc., Bethesda, Maryland, Uniiited States of America","U.S. Military HIV Research Program, Walter Reed Army Institute of Research, Silver Spring, Maryland, United States of America"],"raw_orcid":"https://orcid.org/0000-0001-6459-2437","affiliations":[{"raw_affiliation_string":"Henry M. Jackson Foundation for the Advancement of Military Medicine, Inc., Bethesda, Maryland, Uniiited States of America","institution_ids":["https://openalex.org/I1280259254"]},{"raw_affiliation_string":"U.S. Military HIV Research Program, Walter Reed Army Institute of Research, Silver Spring, Maryland, United States of America","institution_ids":["https://openalex.org/I92664306"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049769001","display_name":"Jennifer A. Hoang","orcid":"https://orcid.org/0000-0001-9264-1881"},"institutions":[{"id":"https://openalex.org/I1280259254","display_name":"Henry M. Jackson Foundation","ror":"https://ror.org/04q9tew83","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1280259254"]},{"id":"https://openalex.org/I92664306","display_name":"Walter Reed Army Institute of Research","ror":"https://ror.org/0145znz58","country_code":"US","type":"government","lineage":["https://openalex.org/I106965489","https://openalex.org/I1304082316","https://openalex.org/I1330347796","https://openalex.org/I2802581893","https://openalex.org/I92664306"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jennifer Hoang","raw_affiliation_strings":["Henry M. Jackson Foundation for the Advancement of Military Medicine, Inc., Bethesda, Maryland, Uniiited States of America","U.S. Military HIV Research Program, Walter Reed Army Institute of Research, Silver Spring, Maryland, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Henry M. Jackson Foundation for the Advancement of Military Medicine, Inc., Bethesda, Maryland, Uniiited States of America","institution_ids":["https://openalex.org/I1280259254"]},{"raw_affiliation_string":"U.S. Military HIV Research Program, Walter Reed Army Institute of Research, Silver Spring, Maryland, United States of America","institution_ids":["https://openalex.org/I92664306"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100427016","display_name":"Yifan Li","orcid":"https://orcid.org/0000-0001-7038-2671"},"institutions":[{"id":"https://openalex.org/I1280259254","display_name":"Henry M. Jackson Foundation","ror":"https://ror.org/04q9tew83","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1280259254"]},{"id":"https://openalex.org/I92664306","display_name":"Walter Reed Army Institute of Research","ror":"https://ror.org/0145znz58","country_code":"US","type":"government","lineage":["https://openalex.org/I106965489","https://openalex.org/I1304082316","https://openalex.org/I1330347796","https://openalex.org/I2802581893","https://openalex.org/I92664306"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yifan Li","raw_affiliation_strings":["Henry M. Jackson Foundation for the Advancement of Military Medicine, Inc., Bethesda, Maryland, Uniiited States of America","U.S. Military HIV Research Program, Walter Reed Army Institute of Research, Silver Spring, Maryland, United States of America"],"raw_orcid":"https://orcid.org/0000-0001-7038-2671","affiliations":[{"raw_affiliation_string":"Henry M. Jackson Foundation for the Advancement of Military Medicine, Inc., Bethesda, Maryland, Uniiited States of America","institution_ids":["https://openalex.org/I1280259254"]},{"raw_affiliation_string":"U.S. Military HIV Research Program, Walter Reed Army Institute of Research, Silver Spring, Maryland, United States of America","institution_ids":["https://openalex.org/I92664306"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090782451","display_name":"Hongjun Bai","orcid":"https://orcid.org/0000-0002-3501-3974"},"institutions":[{"id":"https://openalex.org/I1280259254","display_name":"Henry M. Jackson Foundation","ror":"https://ror.org/04q9tew83","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1280259254"]},{"id":"https://openalex.org/I92664306","display_name":"Walter Reed Army Institute of Research","ror":"https://ror.org/0145znz58","country_code":"US","type":"government","lineage":["https://openalex.org/I106965489","https://openalex.org/I1304082316","https://openalex.org/I1330347796","https://openalex.org/I2802581893","https://openalex.org/I92664306"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hongjun Bai","raw_affiliation_strings":["Henry M. Jackson Foundation for the Advancement of Military Medicine, Inc., Bethesda, Maryland, Uniiited States of America","U.S. Military HIV Research Program, Walter Reed Army Institute of Research, Silver Spring, Maryland, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-3501-3974","affiliations":[{"raw_affiliation_string":"Henry M. Jackson Foundation for the Advancement of Military Medicine, Inc., Bethesda, Maryland, Uniiited States of America","institution_ids":["https://openalex.org/I1280259254"]},{"raw_affiliation_string":"U.S. Military HIV Research Program, Walter Reed Army Institute of Research, Silver Spring, Maryland, United States of America","institution_ids":["https://openalex.org/I92664306"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5067755958","display_name":"Morgane Rolland","orcid":"https://orcid.org/0000-0003-3650-8490"},"institutions":[{"id":"https://openalex.org/I1280259254","display_name":"Henry M. Jackson Foundation","ror":"https://ror.org/04q9tew83","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1280259254"]},{"id":"https://openalex.org/I92664306","display_name":"Walter Reed Army Institute of Research","ror":"https://ror.org/0145znz58","country_code":"US","type":"government","lineage":["https://openalex.org/I106965489","https://openalex.org/I1304082316","https://openalex.org/I1330347796","https://openalex.org/I2802581893","https://openalex.org/I92664306"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Morgane Rolland","raw_affiliation_strings":["Henry M. Jackson Foundation for the Advancement of Military Medicine, Inc., Bethesda, Maryland, Uniiited States of America","U.S. Military HIV Research Program, Walter Reed Army Institute of Research, Silver Spring, Maryland, United States of America"],"raw_orcid":"https://orcid.org/0000-0003-3650-8490","affiliations":[{"raw_affiliation_string":"Henry M. Jackson Foundation for the Advancement of Military Medicine, Inc., Bethesda, Maryland, Uniiited States of America","institution_ids":["https://openalex.org/I1280259254"]},{"raw_affiliation_string":"U.S. Military HIV Research Program, Walter Reed Army Institute of Research, Silver Spring, Maryland, United States of America","institution_ids":["https://openalex.org/I92664306"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5067755958"],"corresponding_institution_ids":["https://openalex.org/I1280259254","https://openalex.org/I92664306"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":0.2963,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.57363831,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"18","issue":"10","first_page":"e1010624","last_page":"e1010624"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10112","display_name":"HIV Research and Treatment","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10112","display_name":"HIV Research and Treatment","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.6563894748687744},{"id":"https://openalex.org/keywords/epitope","display_name":"Epitope","score":0.6097140908241272},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5984185338020325},{"id":"https://openalex.org/keywords/hiv-vaccine","display_name":"HIV vaccine","score":0.5855034589767456},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.5836617946624756},{"id":"https://openalex.org/keywords/human-immunodeficiency-virus","display_name":"Human immunodeficiency virus (HIV)","score":0.5397573113441467},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5304246544837952},{"id":"https://openalex.org/keywords/neutralization","display_name":"Neutralization","score":0.5233761072158813},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4908076226711273},{"id":"https://openalex.org/keywords/aids-vaccines","display_name":"AIDS Vaccines","score":0.4655628204345703},{"id":"https://openalex.org/keywords/antibody","display_name":"Antibody","score":0.4528142809867859},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3452266454696655},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.32135432958602905},{"id":"https://openalex.org/keywords/virus","display_name":"Virus","score":0.19196265935897827},{"id":"https://openalex.org/keywords/vaccine-trial","display_name":"Vaccine trial","score":0.15600743889808655}],"concepts":[{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.6563894748687744},{"id":"https://openalex.org/C195616568","wikidata":"https://www.wikidata.org/wiki/Q128711","display_name":"Epitope","level":3,"score":0.6097140908241272},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5984185338020325},{"id":"https://openalex.org/C2780195530","wikidata":"https://www.wikidata.org/wiki/Q1479804","display_name":"HIV vaccine","level":4,"score":0.5855034589767456},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.5836617946624756},{"id":"https://openalex.org/C3013748606","wikidata":"https://www.wikidata.org/wiki/Q15787","display_name":"Human immunodeficiency virus (HIV)","level":2,"score":0.5397573113441467},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5304246544837952},{"id":"https://openalex.org/C14086860","wikidata":"https://www.wikidata.org/wiki/Q337120","display_name":"Neutralization","level":3,"score":0.5233761072158813},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4908076226711273},{"id":"https://openalex.org/C2909828532","wikidata":"https://www.wikidata.org/wiki/Q1479804","display_name":"AIDS Vaccines","level":4,"score":0.4655628204345703},{"id":"https://openalex.org/C159654299","wikidata":"https://www.wikidata.org/wiki/Q79460","display_name":"Antibody","level":2,"score":0.4528142809867859},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3452266454696655},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.32135432958602905},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.19196265935897827},{"id":"https://openalex.org/C2778190748","wikidata":"https://www.wikidata.org/wiki/Q7907956","display_name":"Vaccine trial","level":3,"score":0.15600743889808655}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015483","descriptor_name":"HIV Antibodies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015483","descriptor_name":"HIV Antibodies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015483","descriptor_name":"HIV Antibodies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000517","qualifier_name":"prevention & control","is_major_topic":true},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000517","qualifier_name":"prevention & control","is_major_topic":true},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000517","qualifier_name":"prevention & control","is_major_topic":true},{"descriptor_ui":"D016915","descriptor_name":"AIDS Vaccines","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D016915","descriptor_name":"AIDS Vaccines","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D016915","descriptor_name":"AIDS Vaccines","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D054299","descriptor_name":"env Gene Products, Human Immunodeficiency Virus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D054299","descriptor_name":"env Gene Products, Human Immunodeficiency Virus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D054299","descriptor_name":"env Gene Products, Human Immunodeficiency Virus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D057134","descriptor_name":"Antibodies, Neutralizing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057134","descriptor_name":"Antibodies, Neutralizing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057134","descriptor_name":"Antibodies, Neutralizing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1371/journal.pcbi.1010624","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010624","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:36315492","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36315492","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:doaj.org/article:c0e4518e4cc24889bff1301ad2a57327","is_oa":true,"landing_page_url":"https://doaj.org/article/c0e4518e4cc24889bff1301ad2a57327","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 18, Iss 10 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9621458","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9621458","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1010624","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010624","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.7099999785423279,"id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G4119534169","display_name":null,"funder_award_id":"W81XWH","funder_id":"https://openalex.org/F4320306078","funder_display_name":"U.S. Department of Defense"},{"id":"https://openalex.org/G553107086","display_name":null,"funder_award_id":"W81XWH-18-2-0040","funder_id":"https://openalex.org/F4320306078","funder_display_name":"U.S. Department of Defense"},{"id":"https://openalex.org/G633733221","display_name":null,"funder_award_id":"W81XWH-18-2-0040","funder_id":"https://openalex.org/F4320307611","funder_display_name":"Henry M. Jackson Foundation"},{"id":"https://openalex.org/G8166743225","display_name":null,"funder_award_id":"W81XWH-18","funder_id":"https://openalex.org/F4320306078","funder_display_name":"U.S. Department of Defense"}],"funders":[{"id":"https://openalex.org/F4320306078","display_name":"U.S. Department of Defense","ror":"https://ror.org/0447fe631"},{"id":"https://openalex.org/F4320306085","display_name":"U.S. Department of Health and Human Services","ror":"https://ror.org/033jnv181"},{"id":"https://openalex.org/F4320307611","display_name":"Henry M. Jackson Foundation","ror":"https://ror.org/04q9tew83"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":84,"referenced_works":["https://openalex.org/W1598661758","https://openalex.org/W1623929953","https://openalex.org/W1919561613","https://openalex.org/W1966607693","https://openalex.org/W1974273518","https://openalex.org/W1977476395","https://openalex.org/W1997677784","https://openalex.org/W1998683102","https://openalex.org/W2002574877","https://openalex.org/W2013815517","https://openalex.org/W2015125044","https://openalex.org/W2030332043","https://openalex.org/W2031604171","https://openalex.org/W2032735163","https://openalex.org/W2034160159","https://openalex.org/W2040949532","https://openalex.org/W2044812530","https://openalex.org/W2048787904","https://openalex.org/W2052937459","https://openalex.org/W2056710036","https://openalex.org/W2059583074","https://openalex.org/W2064815276","https://openalex.org/W2065740427","https://openalex.org/W2072334833","https://openalex.org/W2078553491","https://openalex.org/W2084310667","https://openalex.org/W2093961711","https://openalex.org/W2096193010","https://openalex.org/W2103712192","https://openalex.org/W2108868448","https://openalex.org/W2114273761","https://openalex.org/W2117801354","https://openalex.org/W2122345805","https://openalex.org/W2133233128","https://openalex.org/W2134803208","https://openalex.org/W2135151522","https://openalex.org/W2138922145","https://openalex.org/W2148102806","https://openalex.org/W2151835344","https://openalex.org/W2152048324","https://openalex.org/W2152440860","https://openalex.org/W2152640863","https://openalex.org/W2153163225","https://openalex.org/W2153670011","https://openalex.org/W2160378127","https://openalex.org/W2163627198","https://openalex.org/W2164147266","https://openalex.org/W2198318089","https://openalex.org/W2221838748","https://openalex.org/W2235599671","https://openalex.org/W2240372320","https://openalex.org/W2264077953","https://openalex.org/W2294858472","https://openalex.org/W2336274671","https://openalex.org/W2386785318","https://openalex.org/W2402980652","https://openalex.org/W2429076077","https://openalex.org/W2526682386","https://openalex.org/W2611314002","https://openalex.org/W2614081736","https://openalex.org/W2825912598","https://openalex.org/W2890140503","https://openalex.org/W2892566475","https://openalex.org/W2935457460","https://openalex.org/W2943694132","https://openalex.org/W2951149542","https://openalex.org/W2989520493","https://openalex.org/W3005077496","https://openalex.org/W3005235420","https://openalex.org/W3040654971","https://openalex.org/W3081900692","https://openalex.org/W3082387069","https://openalex.org/W3112732976","https://openalex.org/W3127415827","https://openalex.org/W3135614891","https://openalex.org/W3137307641","https://openalex.org/W3138945586","https://openalex.org/W3139821851","https://openalex.org/W3144630059","https://openalex.org/W3169353175","https://openalex.org/W3177828909","https://openalex.org/W3214517857","https://openalex.org/W4221135676","https://openalex.org/W4281790889"],"related_works":["https://openalex.org/W1977627421","https://openalex.org/W2324909388","https://openalex.org/W1970192083","https://openalex.org/W2084565873","https://openalex.org/W2312275443","https://openalex.org/W2050317773","https://openalex.org/W2000886957","https://openalex.org/W4221135676","https://openalex.org/W3036790611","https://openalex.org/W4292218470"],"abstract_inverted_index":{"The":[0,123],"immense":[1],"global":[2],"diversity":[3,75,119],"of":[4,32,69,111,126,156],"HIV-1":[5,51,143],"is":[6,131,150],"a":[7,12,39,59,67,88,137,142],"significant":[8],"obstacle":[9],"to":[10,62,87,133,141,152],"developing":[11],"safe":[13],"and":[14,100,149],"effective":[15],"vaccine.":[16],"We":[17,37,57,83],"recently":[18],"showed":[19,101],"that":[20,44,71,102],"infections":[21,52],"established":[22],"with":[23,29,53,80,114],"multiple":[24,54,81,115],"founder":[25,55,116],"variants":[26],"are":[27],"associated":[28],"the":[30,46,73,94,103,108,154],"development":[31,155],"neutralization":[33],"breadth":[34],"years":[35],"later.":[36],"propose":[38],"novel":[40],"vaccine":[41,138],"design":[42],"strategy":[43],"integrates":[45],"variability":[47],"observed":[48],"in":[49,77],"acute":[50],"variants.":[56],"developed":[58],"probabilistic":[60],"model":[61,86],"simulate":[63],"this":[64,85],"variability,":[65],"yielding":[66],"set":[68,125],"sequences":[70,106],"present":[72],"minimal":[74],"seen":[76],"an":[78,112],"infection":[79,113],"founders.":[82],"applied":[84],"subtype":[89,144],"C":[90],"consensus":[91],"sequence":[92],"for":[93],"Envelope":[95],"(Env)":[96],"(used":[97],"as":[98,136],"input)":[99],"simulated":[104],"Env":[105],"mimic":[107],"mutational":[109],"landscape":[110],"variants,":[117],"including":[118],"at":[120],"antibody":[121],"epitopes.":[122],"derived":[124],"multi-founder-variant-like,":[127],"minimally":[128],"distant":[129],"antigens":[130],"designed":[132],"be":[134],"used":[135],"cocktail":[139],"specific":[140],"or":[145],"circulating":[146],"recombinant":[147],"form":[148],"expected":[151],"promote":[153],"broadly":[157],"neutralizing":[158],"antibodies.":[159]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
