{"id":"https://openalex.org/W4308708629","doi":"https://doi.org/10.1371/journal.pcbi.1010622","title":"Ten simple rules for developing visualization tools in genomics","display_name":"Ten simple rules for developing visualization tools in genomics","publication_year":2022,"publication_date":"2022-11-10","ids":{"openalex":"https://openalex.org/W4308708629","doi":"https://doi.org/10.1371/journal.pcbi.1010622","pmid":"https://pubmed.ncbi.nlm.nih.gov/36355753"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1010622","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010622","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010622&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010622&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5054082746","display_name":"\u00c9loi Durant","orcid":"https://orcid.org/0000-0002-2734-4327"},"institutions":[{"id":"https://openalex.org/I131077856","display_name":"Centre de Coop\u00e9ration Internationale en Recherche Agronomique pour le D\u00e9veloppement","ror":"https://ror.org/05kpkpg04","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I251321805","display_name":"Agropolis International","ror":"https://ror.org/00txxwv34","country_code":"FR","type":"other","lineage":["https://openalex.org/I251321805"]},{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210117822","display_name":"Diversit\u00e9, adaptation et d\u00e9veloppement des plantes","ror":"https://ror.org/02banhz78","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I131077856","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I19894307","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210113730","https://openalex.org/I4210117822","https://openalex.org/I4210131494","https://openalex.org/I4210166444","https://openalex.org/I4405257220"]},{"id":"https://openalex.org/I4210138994","display_name":"Institut Fran\u00e7ais de Bioinformatique","ror":"https://ror.org/045f7pv37","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210138994"]},{"id":"https://openalex.org/I4210148697","display_name":"Institute of Bioinformatics","ror":"https://ror.org/04hqfvm50","country_code":"IN","type":"nonprofit","lineage":["https://openalex.org/I4210148697"]},{"id":"https://openalex.org/I4210166444","display_name":"Institut de Recherche pour le D\u00e9veloppement","ror":"https://ror.org/05q3vnk25","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210113730","https://openalex.org/I4210131494","https://openalex.org/I4210166444","https://openalex.org/I4405257220"]}],"countries":["FR","IN"],"is_corresponding":true,"raw_author_name":"Eloi Durant","raw_affiliation_strings":["Bioversity International, Parc Scientifique Agropolis II, Montpellier, France","DIADE, University of Montpellier, CIRAD, IRD, Montpellier, France","French Institute of Bioinformatics (IFB)-South Green Bioinformatics Platform, Bioversity, CIRAD, INRAE, IRD, Montpellier, France","Syngenta Seeds SAS, Saint-Sauveur, France","French Institute of Bioinformatics (IFB)\u2014South Green Bioinformatics Platform, Bioversity, CIRAD, INRAE, IRD, Montpellier, France"],"raw_orcid":"https://orcid.org/0000-0002-2734-4327","affiliations":[{"raw_affiliation_string":"Bioversity International, Parc Scientifique Agropolis II, Montpellier, France","institution_ids":["https://openalex.org/I251321805"]},{"raw_affiliation_string":"DIADE, University of Montpellier, CIRAD, IRD, Montpellier, France","institution_ids":["https://openalex.org/I4210117822","https://openalex.org/I19894307","https://openalex.org/I131077856","https://openalex.org/I4210166444"]},{"raw_affiliation_string":"French Institute of Bioinformatics (IFB)-South Green Bioinformatics Platform, Bioversity, CIRAD, INRAE, IRD, Montpellier, France","institution_ids":["https://openalex.org/I131077856","https://openalex.org/I4210148697","https://openalex.org/I4210088668","https://openalex.org/I4210166444"]},{"raw_affiliation_string":"Syngenta Seeds SAS, Saint-Sauveur, France","institution_ids":[]},{"raw_affiliation_string":"French Institute of Bioinformatics (IFB)\u2014South Green Bioinformatics Platform, Bioversity, CIRAD, INRAE, IRD, Montpellier, France","institution_ids":["https://openalex.org/I4210138994","https://openalex.org/I4210088668","https://openalex.org/I131077856","https://openalex.org/I4210166444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037037301","display_name":"Mathieu Rouard","orcid":"https://orcid.org/0000-0003-0284-1885"},"institutions":[{"id":"https://openalex.org/I131077856","display_name":"Centre de Coop\u00e9ration Internationale en Recherche Agronomique pour le D\u00e9veloppement","ror":"https://ror.org/05kpkpg04","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856"]},{"id":"https://openalex.org/I251321805","display_name":"Agropolis International","ror":"https://ror.org/00txxwv34","country_code":"FR","type":"other","lineage":["https://openalex.org/I251321805"]},{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210138994","display_name":"Institut Fran\u00e7ais de Bioinformatique","ror":"https://ror.org/045f7pv37","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210138994"]},{"id":"https://openalex.org/I4210148697","display_name":"Institute of Bioinformatics","ror":"https://ror.org/04hqfvm50","country_code":"IN","type":"nonprofit","lineage":["https://openalex.org/I4210148697"]},{"id":"https://openalex.org/I4210166444","display_name":"Institut de Recherche pour le D\u00e9veloppement","ror":"https://ror.org/05q3vnk25","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210113730","https://openalex.org/I4210131494","https://openalex.org/I4210166444","https://openalex.org/I4405257220"]}],"countries":["FR","IN"],"is_corresponding":false,"raw_author_name":"Mathieu Rouard","raw_affiliation_strings":["Bioversity International, Parc Scientifique Agropolis II, Montpellier, France","French Institute of Bioinformatics (IFB)-South Green Bioinformatics Platform, Bioversity, CIRAD, INRAE, IRD, Montpellier, France","French Institute of Bioinformatics (IFB)\u2014South Green Bioinformatics Platform, Bioversity, CIRAD, INRAE, IRD, Montpellier, France"],"raw_orcid":"https://orcid.org/0000-0003-0284-1885","affiliations":[{"raw_affiliation_string":"Bioversity International, Parc Scientifique Agropolis II, Montpellier, France","institution_ids":["https://openalex.org/I251321805"]},{"raw_affiliation_string":"French Institute of Bioinformatics (IFB)-South Green Bioinformatics Platform, Bioversity, CIRAD, INRAE, IRD, Montpellier, France","institution_ids":["https://openalex.org/I131077856","https://openalex.org/I4210148697","https://openalex.org/I4210088668","https://openalex.org/I4210166444"]},{"raw_affiliation_string":"French Institute of Bioinformatics (IFB)\u2014South Green Bioinformatics Platform, Bioversity, CIRAD, INRAE, IRD, Montpellier, France","institution_ids":["https://openalex.org/I4210138994","https://openalex.org/I4210088668","https://openalex.org/I131077856","https://openalex.org/I4210166444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041144434","display_name":"Eric Ganko","orcid":"https://orcid.org/0000-0003-2931-7258"},"institutions":[{"id":"https://openalex.org/I4210096784","display_name":"Syngenta (United States)","ror":"https://ror.org/00shfq002","country_code":"US","type":"company","lineage":["https://openalex.org/I4210096784","https://openalex.org/I89199228"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eric W. Ganko","raw_affiliation_strings":["Seeds Research, Syngenta Crop Protection, LLC, Research Triangle Park, Durham, North Carolina, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Seeds Research, Syngenta Crop Protection, LLC, Research Triangle Park, Durham, North Carolina, United States of America","institution_ids":["https://openalex.org/I4210096784"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110945765","display_name":"Cedric Muller","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Cedric Muller","raw_affiliation_strings":["Syngenta Seeds SAS, Saint-Sauveur, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Syngenta Seeds SAS, Saint-Sauveur, France","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012589523","display_name":"Alan Cleary","orcid":"https://orcid.org/0000-0002-6567-5346"},"institutions":[{"id":"https://openalex.org/I1310183320","display_name":"National Center for Genome Resources","ror":"https://ror.org/01p4cne93","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1310183320"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alan M. Cleary","raw_affiliation_strings":["National Center for Genome Resources, Santa Fe, New Mexico, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Genome Resources, Santa Fe, New Mexico, United States of America","institution_ids":["https://openalex.org/I1310183320"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077194053","display_name":"Andrew Farmer","orcid":"https://orcid.org/0000-0002-4224-2433"},"institutions":[{"id":"https://openalex.org/I1310183320","display_name":"National Center for Genome Resources","ror":"https://ror.org/01p4cne93","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1310183320"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrew D. Farmer","raw_affiliation_strings":["National Center for Genome Resources, Santa Fe, New Mexico, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Genome Resources, Santa Fe, New Mexico, United States of America","institution_ids":["https://openalex.org/I1310183320"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050224337","display_name":"Matthieu Conte","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Matthieu Conte","raw_affiliation_strings":["Syngenta Seeds SAS, Saint-Sauveur, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Syngenta Seeds SAS, Saint-Sauveur, France","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5061279430","display_name":"Fran\u00e7ois Sabot","orcid":"https://orcid.org/0000-0002-8522-7583"},"institutions":[{"id":"https://openalex.org/I131077856","display_name":"Centre de Coop\u00e9ration Internationale en Recherche Agronomique pour le D\u00e9veloppement","ror":"https://ror.org/05kpkpg04","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210117822","display_name":"Diversit\u00e9, adaptation et d\u00e9veloppement des plantes","ror":"https://ror.org/02banhz78","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I131077856","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I19894307","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210113730","https://openalex.org/I4210117822","https://openalex.org/I4210131494","https://openalex.org/I4210166444","https://openalex.org/I4405257220"]},{"id":"https://openalex.org/I4210138994","display_name":"Institut Fran\u00e7ais de Bioinformatique","ror":"https://ror.org/045f7pv37","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210138994"]},{"id":"https://openalex.org/I4210148697","display_name":"Institute of Bioinformatics","ror":"https://ror.org/04hqfvm50","country_code":"IN","type":"nonprofit","lineage":["https://openalex.org/I4210148697"]},{"id":"https://openalex.org/I4210166444","display_name":"Institut de Recherche pour le D\u00e9veloppement","ror":"https://ror.org/05q3vnk25","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210113730","https://openalex.org/I4210131494","https://openalex.org/I4210166444","https://openalex.org/I4405257220"]}],"countries":["FR","IN"],"is_corresponding":true,"raw_author_name":"Francois Sabot","raw_affiliation_strings":["DIADE, University of Montpellier, CIRAD, IRD, Montpellier, France","French Institute of Bioinformatics (IFB)-South Green Bioinformatics Platform, Bioversity, CIRAD, INRAE, IRD, Montpellier, France","French Institute of Bioinformatics (IFB)\u2014South Green Bioinformatics Platform, Bioversity, CIRAD, INRAE, IRD, Montpellier, France"],"raw_orcid":"https://orcid.org/0000-0002-8522-7583","affiliations":[{"raw_affiliation_string":"DIADE, University of Montpellier, CIRAD, IRD, Montpellier, France","institution_ids":["https://openalex.org/I4210117822","https://openalex.org/I19894307","https://openalex.org/I131077856","https://openalex.org/I4210166444"]},{"raw_affiliation_string":"French Institute of Bioinformatics (IFB)-South Green Bioinformatics Platform, Bioversity, CIRAD, INRAE, IRD, Montpellier, France","institution_ids":["https://openalex.org/I131077856","https://openalex.org/I4210148697","https://openalex.org/I4210088668","https://openalex.org/I4210166444"]},{"raw_affiliation_string":"French Institute of Bioinformatics (IFB)\u2014South Green Bioinformatics Platform, Bioversity, CIRAD, INRAE, IRD, Montpellier, France","institution_ids":["https://openalex.org/I4210138994","https://openalex.org/I4210088668","https://openalex.org/I131077856","https://openalex.org/I4210166444"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5054082746","https://openalex.org/A5061279430"],"corresponding_institution_ids":["https://openalex.org/I131077856","https://openalex.org/I19894307","https://openalex.org/I251321805","https://openalex.org/I4210088668","https://openalex.org/I4210117822","https://openalex.org/I4210138994","https://openalex.org/I4210148697","https://openalex.org/I4210166444"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":0.26,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.52919382,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"18","issue":"11","first_page":"e1010622","last_page":"e1010622"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9911999702453613,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7244862914085388},{"id":"https://openalex.org/keywords/simple","display_name":"Simple (philosophy)","score":0.7007319927215576},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.575551450252533},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.46673497557640076},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.46000367403030396},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3746548295021057},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2703125774860382},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2156963050365448},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.20204973220825195},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11523443460464478},{"id":"https://openalex.org/keywords/epistemology","display_name":"Epistemology","score":0.05017426609992981}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7244862914085388},{"id":"https://openalex.org/C2780586882","wikidata":"https://www.wikidata.org/wiki/Q7520643","display_name":"Simple (philosophy)","level":2,"score":0.7007319927215576},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.575551450252533},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.46673497557640076},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.46000367403030396},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3746548295021057},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2703125774860382},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2156963050365448},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.20204973220825195},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11523443460464478},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.05017426609992981},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1371/journal.pcbi.1010622","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010622","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010622&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:36355753","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36355753","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:HAL:hal-03996741v1","is_oa":true,"landing_page_url":"https://hal.science/hal-03996741","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, 2022, 18 (11), pp.e1010622. &#x27E8;10.1371/journal.pcbi.1010622&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:cgspace.cgiar.org:10568/125491","is_oa":true,"landing_page_url":"https://hdl.handle.net/10568/125491","pdf_url":null,"source":{"id":"https://openalex.org/S4306402055","display_name":"CGSPace A Repository of Agricultural Research Outputs (Consultative Group for International Agricultural Research)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1286583668","host_organization_name":"CGIAR","host_organization_lineage":["https://openalex.org/I1286583668"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLOS Computational Biology","raw_type":"Journal Article"},{"id":"pmh:oai:doaj.org/article:53ad2d64d783419ead065c642c29d679","is_oa":false,"landing_page_url":"https://doaj.org/article/53ad2d64d783419ead065c642c29d679","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 18, Iss 11, p e1010622 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9648702","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9648702","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1010622","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010622","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010622&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4399999976158142,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4308708629.pdf","grobid_xml":"https://content.openalex.org/works/W4308708629.grobid-xml"},"referenced_works_count":58,"referenced_works":["https://openalex.org/W52809394","https://openalex.org/W884650706","https://openalex.org/W1574680346","https://openalex.org/W1887724846","https://openalex.org/W1902503727","https://openalex.org/W1970569592","https://openalex.org/W1973012451","https://openalex.org/W2069266228","https://openalex.org/W2088960431","https://openalex.org/W2104846587","https://openalex.org/W2117131162","https://openalex.org/W2134517855","https://openalex.org/W2138199375","https://openalex.org/W2159675211","https://openalex.org/W2336957559","https://openalex.org/W2555946111","https://openalex.org/W2613409207","https://openalex.org/W2740580754","https://openalex.org/W2765745983","https://openalex.org/W2942849560","https://openalex.org/W2944634251","https://openalex.org/W2951034038","https://openalex.org/W2951704474","https://openalex.org/W2952045272","https://openalex.org/W2952651570","https://openalex.org/W2971292544","https://openalex.org/W2982356064","https://openalex.org/W2986579771","https://openalex.org/W3004958483","https://openalex.org/W3013315746","https://openalex.org/W3048964825","https://openalex.org/W3092487423","https://openalex.org/W3092696550","https://openalex.org/W3139299242","https://openalex.org/W3170248800","https://openalex.org/W3174992442","https://openalex.org/W3175134991","https://openalex.org/W3175819408","https://openalex.org/W3178501946","https://openalex.org/W3190112016","https://openalex.org/W3192525768","https://openalex.org/W3202450964","https://openalex.org/W3203255635","https://openalex.org/W3215091201","https://openalex.org/W4200135473","https://openalex.org/W4200375399","https://openalex.org/W4206122360","https://openalex.org/W4210547217","https://openalex.org/W4213165903","https://openalex.org/W4226351013","https://openalex.org/W4245596076","https://openalex.org/W4280495757","https://openalex.org/W4280523692","https://openalex.org/W4280553929","https://openalex.org/W4287510214","https://openalex.org/W4291138602","https://openalex.org/W4316926479","https://openalex.org/W6741684655"],"related_works":["https://openalex.org/W1585007175","https://openalex.org/W2068608913","https://openalex.org/W2382521049","https://openalex.org/W2144385241","https://openalex.org/W3124914020","https://openalex.org/W4300101996","https://openalex.org/W2165950148","https://openalex.org/W4253593777","https://openalex.org/W2951497643","https://openalex.org/W2053972265"],"abstract_inverted_index":{"Visualization":[0],"is":[1,17],"key":[2],"for":[3],"expanding":[4],"and":[5,11,72,83],"communicating":[6],"knowledge":[7],"to":[8,56],"both":[9],"specialized":[10],"broad":[12],"audiences-after":[13],"all,":[14],"\"a":[15],"picture":[16],"worth":[18],"a":[19,45,91],"thousand":[20],"words,\"":[21],"right?":[22],"That":[23],"much":[24],"has":[25],"become":[26],"clear":[27],"during":[28],"the":[29,40,49,57,62,78],"Severe":[30],"Acute":[31],"Respiratory":[32],"Syndrome":[33],"Coronavirus":[34,66],"2":[35],"(SARS-CoV-2)":[36],"outbreak":[37],"when":[38],"\"Flatten":[39],"curve!\"":[41],"[1]":[42],"turned":[43],"into":[44],"catchier":[46],"watchword":[47],"than":[48,61],"usual":[50],"\"Wash":[51],"your":[52],"hands!,\"":[53],"by":[54],"referring":[55],"related":[58],"graphics":[59],"rather":[60],"health":[63],"discourses":[64],"themselves.":[65],"Disease":[67],"2019":[68],"(COVID-19)":[69],"visualizations,":[70],"good":[71],"bad":[73],"[2],":[74],"became":[75],"omnipresent":[76],"in":[77],"public":[79],"debates,":[80],"with":[81],"interactive":[82],"dynamic":[84],"visualization":[85],"platforms":[86],"like":[87],"Nextstrain":[88],"[3]":[89],"gaining":[90],"lot":[92],"of":[93],"popularity.":[94]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1}],"updated_date":"2026-05-12T08:28:47.272897","created_date":"2025-10-10T00:00:00"}
