{"id":"https://openalex.org/W4308708634","doi":"https://doi.org/10.1371/journal.pcbi.1010615","title":"Reproducibility efforts as a teaching tool: A pilot study","display_name":"Reproducibility efforts as a teaching tool: A pilot study","publication_year":2022,"publication_date":"2022-11-10","ids":{"openalex":"https://openalex.org/W4308708634","doi":"https://doi.org/10.1371/journal.pcbi.1010615","pmid":"https://pubmed.ncbi.nlm.nih.gov/36355750"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1010615","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010615","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010615&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010615&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5061175529","display_name":"Nestoras Karathanasis","orcid":"https://orcid.org/0000-0003-4119-0851"},"institutions":[{"id":"https://openalex.org/I149251103","display_name":"Thomas Jefferson University","ror":"https://ror.org/00ysqcn41","country_code":"US","type":"education","lineage":["https://openalex.org/I149251103"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Nestoras Karathanasis","raw_affiliation_strings":["Computational Medicine Center, Thomas Jefferson University, Pennsylvania, United States of America"],"affiliations":[{"raw_affiliation_string":"Computational Medicine Center, Thomas Jefferson University, Pennsylvania, United States of America","institution_ids":["https://openalex.org/I149251103"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052549120","display_name":"Daniel Hwang","orcid":"https://orcid.org/0000-0002-6071-8271"},"institutions":[{"id":"https://openalex.org/I149251103","display_name":"Thomas Jefferson University","ror":"https://ror.org/00ysqcn41","country_code":"US","type":"education","lineage":["https://openalex.org/I149251103"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniel Hwang","raw_affiliation_strings":["Department of Neurology, Thomas Jefferson University, Pennsylvania, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Neurology, Thomas Jefferson University, Pennsylvania, United States of America","institution_ids":["https://openalex.org/I149251103"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072165255","display_name":"Vibol Heng","orcid":null},"institutions":[{"id":"https://openalex.org/I149251103","display_name":"Thomas Jefferson University","ror":"https://ror.org/00ysqcn41","country_code":"US","type":"education","lineage":["https://openalex.org/I149251103"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vibol Heng","raw_affiliation_strings":["Neuroscience Department, Thomas Jefferson University, Pennsylvania, United States of America"],"affiliations":[{"raw_affiliation_string":"Neuroscience Department, Thomas Jefferson University, Pennsylvania, United States of America","institution_ids":["https://openalex.org/I149251103"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074764086","display_name":"Rimal Abhimannyu","orcid":"https://orcid.org/0000-0002-5973-8048"},"institutions":[{"id":"https://openalex.org/I149251103","display_name":"Thomas Jefferson University","ror":"https://ror.org/00ysqcn41","country_code":"US","type":"education","lineage":["https://openalex.org/I149251103"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rimal Abhimannyu","raw_affiliation_strings":["Department of Biochemistry and Molecular Biology, Thomas Jefferson University, Pennsylvania, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, Thomas Jefferson University, Pennsylvania, United States of America","institution_ids":["https://openalex.org/I149251103"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059620653","display_name":"Phillip Slogoff-Sevilla","orcid":null},"institutions":[{"id":"https://openalex.org/I149251103","display_name":"Thomas Jefferson University","ror":"https://ror.org/00ysqcn41","country_code":"US","type":"education","lineage":["https://openalex.org/I149251103"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Phillip Slogoff-Sevilla","raw_affiliation_strings":["Computational Medicine Center, Thomas Jefferson University, Pennsylvania, United States of America"],"affiliations":[{"raw_affiliation_string":"Computational Medicine Center, Thomas Jefferson University, Pennsylvania, United States of America","institution_ids":["https://openalex.org/I149251103"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034265697","display_name":"Gina Buchel","orcid":"https://orcid.org/0000-0001-5266-2477"},"institutions":[{"id":"https://openalex.org/I149251103","display_name":"Thomas Jefferson University","ror":"https://ror.org/00ysqcn41","country_code":"US","type":"education","lineage":["https://openalex.org/I149251103"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gina Buchel","raw_affiliation_strings":["Department of Biochemistry and Molecular Biology, Thomas Jefferson University, Pennsylvania, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, Thomas Jefferson University, Pennsylvania, United States of America","institution_ids":["https://openalex.org/I149251103"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018001787","display_name":"Victoria S. Frisbie","orcid":"https://orcid.org/0000-0001-7558-9006"},"institutions":[{"id":"https://openalex.org/I149251103","display_name":"Thomas Jefferson University","ror":"https://ror.org/00ysqcn41","country_code":"US","type":"education","lineage":["https://openalex.org/I149251103"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Victoria Frisbie","raw_affiliation_strings":["Department of Biochemistry and Molecular Biology, Thomas Jefferson University, Pennsylvania, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, Thomas Jefferson University, Pennsylvania, United States of America","institution_ids":["https://openalex.org/I149251103"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101774193","display_name":"Peiyao Li","orcid":"https://orcid.org/0000-0001-7829-6321"},"institutions":[{"id":"https://openalex.org/I149251103","display_name":"Thomas Jefferson University","ror":"https://ror.org/00ysqcn41","country_code":"US","type":"education","lineage":["https://openalex.org/I149251103"]},{"id":"https://openalex.org/I4210106595","display_name":"Sidney Kimmel Cancer Center","ror":"https://ror.org/010h6g454","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210106595"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Peiyao Li","raw_affiliation_strings":["Cancer Biology Department, Sidney Kimmel Cancer Center, Thomas Jefferson University, Pennsylvania, United States of America"],"affiliations":[{"raw_affiliation_string":"Cancer Biology Department, Sidney Kimmel Cancer Center, Thomas Jefferson University, Pennsylvania, United States of America","institution_ids":["https://openalex.org/I4210106595","https://openalex.org/I149251103"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010336440","display_name":"Dafni Kryoneriti","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Dafni Kryoneriti","raw_affiliation_strings":["Independent Researcher, Hamburg, Germany"],"affiliations":[{"raw_affiliation_string":"Independent Researcher, Hamburg, Germany","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5054046136","display_name":"Isidore Rigoutsos","orcid":"https://orcid.org/0000-0003-1529-8631"},"institutions":[{"id":"https://openalex.org/I149251103","display_name":"Thomas Jefferson University","ror":"https://ror.org/00ysqcn41","country_code":"US","type":"education","lineage":["https://openalex.org/I149251103"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Isidore Rigoutsos","raw_affiliation_strings":["Computational Medicine Center, Thomas Jefferson University, Pennsylvania, United States of America"],"affiliations":[{"raw_affiliation_string":"Computational Medicine Center, Thomas Jefferson University, Pennsylvania, United States of America","institution_ids":["https://openalex.org/I149251103"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5061175529"],"corresponding_institution_ids":["https://openalex.org/I149251103"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":1.9215,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.86176201,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"18","issue":"11","first_page":"e1010615","last_page":"e1010615"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11516","display_name":"Visual and Cognitive Learning Processes","score":0.9639999866485596,"subfield":{"id":"https://openalex.org/subfields/3205","display_name":"Experimental and Cognitive Psychology"},"field":{"id":"https://openalex.org/fields/32","display_name":"Psychology"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11516","display_name":"Visual and Cognitive Learning Processes","score":0.9639999866485596,"subfield":{"id":"https://openalex.org/subfields/3205","display_name":"Experimental and Cognitive Psychology"},"field":{"id":"https://openalex.org/fields/32","display_name":"Psychology"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/replicate","display_name":"Replicate","score":0.8817545771598816},{"id":"https://openalex.org/keywords/replication","display_name":"Replication (statistics)","score":0.8162257671356201},{"id":"https://openalex.org/keywords/credibility","display_name":"Credibility","score":0.733314037322998},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6787608861923218},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.5618957281112671},{"id":"https://openalex.org/keywords/curriculum","display_name":"Curriculum","score":0.5472140908241272},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4825546145439148},{"id":"https://openalex.org/keywords/relevance","display_name":"Relevance (law)","score":0.4152088761329651},{"id":"https://openalex.org/keywords/mathematics-education","display_name":"Mathematics education","score":0.3454933762550354},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.22817599773406982},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2133312225341797},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13473573327064514}],"concepts":[{"id":"https://openalex.org/C2781162219","wikidata":"https://www.wikidata.org/wiki/Q26250693","display_name":"Replicate","level":2,"score":0.8817545771598816},{"id":"https://openalex.org/C12590798","wikidata":"https://www.wikidata.org/wiki/Q3933199","display_name":"Replication (statistics)","level":2,"score":0.8162257671356201},{"id":"https://openalex.org/C2780224610","wikidata":"https://www.wikidata.org/wiki/Q1530061","display_name":"Credibility","level":2,"score":0.733314037322998},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6787608861923218},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.5618957281112671},{"id":"https://openalex.org/C47177190","wikidata":"https://www.wikidata.org/wiki/Q207137","display_name":"Curriculum","level":2,"score":0.5472140908241272},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4825546145439148},{"id":"https://openalex.org/C158154518","wikidata":"https://www.wikidata.org/wiki/Q7310970","display_name":"Relevance (law)","level":2,"score":0.4152088761329651},{"id":"https://openalex.org/C145420912","wikidata":"https://www.wikidata.org/wiki/Q853077","display_name":"Mathematics education","level":1,"score":0.3454933762550354},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.22817599773406982},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2133312225341797},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13473573327064514},{"id":"https://openalex.org/C19417346","wikidata":"https://www.wikidata.org/wiki/Q7922","display_name":"Pedagogy","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003479","descriptor_name":"Curriculum","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003479","descriptor_name":"Curriculum","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003479","descriptor_name":"Curriculum","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004500","descriptor_name":"Education, Graduate","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D004500","descriptor_name":"Education, Graduate","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D004500","descriptor_name":"Education, Graduate","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010865","descriptor_name":"Pilot Projects","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010865","descriptor_name":"Pilot Projects","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010865","descriptor_name":"Pilot Projects","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013334","descriptor_name":"Students","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013334","descriptor_name":"Students","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013334","descriptor_name":"Students","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013663","descriptor_name":"Teaching","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013663","descriptor_name":"Teaching","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013663","descriptor_name":"Teaching","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1371/journal.pcbi.1010615","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010615","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010615&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:36355750","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36355750","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:jdc.jefferson.edu:tjucompmedctrfp-1043","is_oa":true,"landing_page_url":"https://jdc.jefferson.edu/tjucompmedctrfp/43","pdf_url":null,"source":{"id":"https://openalex.org/S4210178181","display_name":"The Medicine Forum","issn_l":"2325-2863","issn":["2325-2863"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Computational Medicine Center Faculty Papers","raw_type":"article"},{"id":"pmh:oai:doaj.org/article:40248b4e44854a57ad5531c5516e8273","is_oa":true,"landing_page_url":"https://doaj.org/article/40248b4e44854a57ad5531c5516e8273","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 18, Iss 11, p e1010615 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9648701","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9648701","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1010615","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010615","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010615&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.4699999988079071}],"awards":[],"funders":[{"id":"https://openalex.org/F4320310581","display_name":"Thomas Jefferson University","ror":"https://ror.org/00ysqcn41"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4308708634.pdf","grobid_xml":"https://content.openalex.org/works/W4308708634.grobid-xml"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W1897139626","https://openalex.org/W1993266153","https://openalex.org/W2006546769","https://openalex.org/W2067833766","https://openalex.org/W2115494678","https://openalex.org/W2118070418","https://openalex.org/W2160697532","https://openalex.org/W2164005910","https://openalex.org/W2170819005","https://openalex.org/W2414283705","https://openalex.org/W2783562181","https://openalex.org/W2807609377","https://openalex.org/W2914927764","https://openalex.org/W2917207851","https://openalex.org/W2968719262","https://openalex.org/W2979908052","https://openalex.org/W3012838233","https://openalex.org/W3122709706","https://openalex.org/W4213117155","https://openalex.org/W4247184676","https://openalex.org/W6684051499","https://openalex.org/W6715561983"],"related_works":["https://openalex.org/W2053915529","https://openalex.org/W3086687521","https://openalex.org/W2378141881","https://openalex.org/W4230748207","https://openalex.org/W3013364101","https://openalex.org/W2025865172","https://openalex.org/W2962733633","https://openalex.org/W4297957245","https://openalex.org/W2746499228","https://openalex.org/W4220767635"],"abstract_inverted_index":{"The":[0,121,167,207,237],"\"replication":[1],"crisis\"":[2],"is":[3,26,123,130],"a":[4,105,221],"methodological":[5],"problem":[6],"in":[7,80,108,134],"which":[8],"many":[9],"scientific":[10,32,49,277,288],"research":[11],"findings":[12],"have":[13,141],"been":[14],"difficult":[15],"or":[16],"impossible":[17],"to":[18,60,126,143,162,171,175,211,224,274],"replicate.":[19],"Because":[20],"the":[21,31,37,54,68,101,111,148,173,186,196,214,229,235,241,249,253,263,287,290,296],"reproducibility":[22],"of":[23,30,39,48,53,67,97,110,234,252,292,298],"empirical":[24],"results":[25,63],"an":[27,159],"essential":[28],"aspect":[29],"method,":[33],"such":[34],"failures":[35],"endanger":[36],"credibility":[38],"theories":[40],"based":[41],"on":[42],"them":[43,285],"and":[44,78,88,116,129,137,184,193,199,248,260,295],"possibly":[45],"significant":[46],"portions":[47],"knowledge.":[50],"An":[51],"instance":[52],"replication":[55],"crisis,":[56],"analytic":[57],"replication,":[58],"pertains":[59],"reproducing":[61],"published":[62],"through":[64],"computational":[65,89],"reanalysis":[66],"authors'":[69],"original":[70],"data.":[71],"However,":[72],"direct":[73],"replications":[74],"are":[75],"costly,":[76],"time-consuming,":[77],"unrewarded":[79],"today's":[81],"publishing":[82],"standards.":[83],"We":[84,265],"propose":[85],"that":[86,267],"bioinformatics":[87],"biology":[90],"students":[91,133,174,230,273],"replicate":[92,225],"recent":[93],"discoveries":[94],"as":[95],"part":[96],"their":[98,204],"curriculum.":[99],"Considering":[100],"above,":[102],"we":[103,114,154],"performed":[104],"pilot":[106],"study":[107],"one":[109],"graduate-level":[112,222],"courses":[113],"developed":[115],"taught":[117],"at":[118],"our":[119,135],"University.":[120],"course":[122,149],"entitled":[124],"Intro":[125],"R":[127],"Programming":[128],"meant":[131],"for":[132,220,243],"Master's":[136],"PhD":[138],"programs":[139],"who":[140],"little":[142],"no":[144],"programming":[145,246],"skills.":[146],"As":[147],"emphasized":[150],"real-world":[151],"data":[152,178],"analysis,":[153],"thought":[155],"it":[156],"would":[157],"be":[158],"appropriate":[160,280],"setting":[161],"carry":[163],"out":[164],"this":[165,268],"study.":[166],"primary":[168],"objective":[169],"was":[170,210],"expose":[172],"real":[176],"biological":[177],"analysis":[179],"problems.":[180],"These":[181],"include":[182],"locating":[183],"downloading":[185],"needed":[187],"datasets,":[188],"understanding":[189,195],"any":[190],"underlying":[191],"conventions":[192],"annotations,":[194],"analytical":[197],"methods,":[198],"regenerating":[200],"multiple":[201],"graphs":[202],"from":[203],"assigned":[205,215],"article.":[206],"secondary":[208],"goal":[209],"determine":[212],"whether":[213],"articles":[216],"contained":[217],"sufficient":[218],"information":[219],"student":[223],"its":[226],"figures.":[227,236],"Overall,":[228],"successfully":[231],"reproduced":[232],"39%":[233],"main":[238],"obstacles":[239],"were":[240,257],"need":[242],"more":[244],"advanced":[245],"skills":[247],"incomplete":[250],"documentation":[251],"applied":[254],"methods.":[255],"Students":[256],"engaged,":[258],"enthusiastic,":[259],"focused":[261],"throughout":[262],"semester.":[264],"believe":[266],"teaching":[269],"approach":[270],"will":[271,283],"allow":[272],"make":[275],"fundamental":[276],"contributions":[278],"under":[279],"supervision.":[281],"It":[282],"teach":[284],"about":[286],"process,":[289],"importance":[291,297],"reporting":[293],"standards,":[294],"openness.":[299]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
