{"id":"https://openalex.org/W4305082628","doi":"https://doi.org/10.1371/journal.pcbi.1010614","title":"CNAViz: An interactive webtool for user-guided segmentation of tumor DNA sequencing data","display_name":"CNAViz: An interactive webtool for user-guided segmentation of tumor DNA sequencing data","publication_year":2022,"publication_date":"2022-10-13","ids":{"openalex":"https://openalex.org/W4305082628","doi":"https://doi.org/10.1371/journal.pcbi.1010614","pmid":"https://pubmed.ncbi.nlm.nih.gov/36228003"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1010614","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010614","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1371/journal.pcbi.1010614","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5091616063","display_name":"Zubair Lalani","orcid":null},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zubair Lalani","raw_affiliation_strings":["Department of Computer Science, University of Illinois Urbana-Champaign, Urbana, Illinois, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Illinois Urbana-Champaign, Urbana, Illinois, United States of America","institution_ids":["https://openalex.org/I157725225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006996313","display_name":"Gillian Chu","orcid":"https://orcid.org/0000-0003-2205-730X"},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gillian Chu","raw_affiliation_strings":["Department of Computer Science, University of Illinois Urbana-Champaign, Urbana, Illinois, United States of America"],"raw_orcid":"https://orcid.org/0000-0003-2205-730X","affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Illinois Urbana-Champaign, Urbana, Illinois, United States of America","institution_ids":["https://openalex.org/I157725225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068065913","display_name":"Silas Hsu","orcid":"https://orcid.org/0000-0001-8268-5864"},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Silas Hsu","raw_affiliation_strings":["Department of Computer Science, University of Illinois Urbana-Champaign, Urbana, Illinois, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Illinois Urbana-Champaign, Urbana, Illinois, United States of America","institution_ids":["https://openalex.org/I157725225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020984741","display_name":"Shaw Kagawa","orcid":"https://orcid.org/0000-0002-9943-3855"},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shaw Kagawa","raw_affiliation_strings":["Department of Computer Science, University of Illinois Urbana-Champaign, Urbana, Illinois, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Illinois Urbana-Champaign, Urbana, Illinois, United States of America","institution_ids":["https://openalex.org/I157725225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020809971","display_name":"Michael Xiang","orcid":"https://orcid.org/0000-0003-0170-9321"},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael Xiang","raw_affiliation_strings":["Department of Computer Science, University of Illinois Urbana-Champaign, Urbana, Illinois, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Illinois Urbana-Champaign, Urbana, Illinois, United States of America","institution_ids":["https://openalex.org/I157725225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015317678","display_name":"Simone Zaccaria","orcid":"https://orcid.org/0000-0002-5265-7392"},"institutions":[{"id":"https://openalex.org/I2801316944","display_name":"Cancer Research UK","ror":"https://ror.org/054225q67","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2801316944"]},{"id":"https://openalex.org/I4210088881","display_name":"London Cancer","ror":"https://ror.org/005kpb876","country_code":"GB","type":"other","lineage":["https://openalex.org/I4210088881"]},{"id":"https://openalex.org/I4210147892","display_name":"CRUK Lung Cancer Centre of Excellence","ror":"https://ror.org/04nm2mq63","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210147892"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Simone Zaccaria","raw_affiliation_strings":["Cancer Research UK Lung Cancer Centre of Excellence, University College London Cancer Institute, London, United Kingdom","Computational Cancer Genomics Research Group, University College London Cancer Institute, London, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cancer Research UK Lung Cancer Centre of Excellence, University College London Cancer Institute, London, United Kingdom","institution_ids":["https://openalex.org/I2801316944","https://openalex.org/I4210088881","https://openalex.org/I4210147892","https://openalex.org/I45129253"]},{"raw_affiliation_string":"Computational Cancer Genomics Research Group, University College London Cancer Institute, London, United Kingdom","institution_ids":["https://openalex.org/I4210088881","https://openalex.org/I45129253"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089040838","display_name":"Mohammed El-Kebir","orcid":"https://orcid.org/0000-0002-1468-2407"},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Mohammed El-Kebir","raw_affiliation_strings":["Cancer Center at Illinois, University of Illinois Urbana-Champaign, Urbana, Illinois, United States of America","Department of Computer Science, University of Illinois Urbana-Champaign, Urbana, Illinois, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-1468-2407","affiliations":[{"raw_affiliation_string":"Cancer Center at Illinois, University of Illinois Urbana-Champaign, Urbana, Illinois, United States of America","institution_ids":["https://openalex.org/I157725225"]},{"raw_affiliation_string":"Department of Computer Science, University of Illinois Urbana-Champaign, Urbana, Illinois, United States of America","institution_ids":["https://openalex.org/I157725225"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5015317678","https://openalex.org/A5089040838"],"corresponding_institution_ids":["https://openalex.org/I157725225","https://openalex.org/I2801316944","https://openalex.org/I4210088881","https://openalex.org/I4210147892","https://openalex.org/I45129253"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":0.1899,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.46288464,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":95},"biblio":{"volume":"18","issue":"10","first_page":"e1010614","last_page":"e1010614"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.8453898429870605},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6167568564414978},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.5187885165214539},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.48184454441070557},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.42101776599884033},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4005157947540283},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3772469162940979},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.35994070768356323},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.27318984270095825},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2374122142791748},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.1904546320438385}],"concepts":[{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.8453898429870605},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6167568564414978},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.5187885165214539},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.48184454441070557},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.42101776599884033},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4005157947540283},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3772469162940979},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.35994070768356323},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.27318984270095825},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2374122142791748},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.1904546320438385},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D004273","descriptor_name":"DNA, Neoplasm","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004273","descriptor_name":"DNA, Neoplasm","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004273","descriptor_name":"DNA, Neoplasm","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1371/journal.pcbi.1010614","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010614","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:36228003","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36228003","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:boa.unimib.it:10281/508659","is_oa":true,"landing_page_url":"https://hdl.handle.net/10281/508659","pdf_url":null,"source":{"id":"https://openalex.org/S4306401259","display_name":"BOA (University of Milano-Bicocca)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I66752286","host_organization_name":"University of Milano-Bicocca","host_organization_lineage":["https://openalex.org/I66752286"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:3ba307731d514e508b2b02240cbaa334","is_oa":true,"landing_page_url":"https://doaj.org/article/3ba307731d514e508b2b02240cbaa334","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 18, Iss 10, p e1010614 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9595559","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9595559","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1010614","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010614","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.4099999964237213}],"awards":[{"id":"https://openalex.org/G2489399592","display_name":null,"funder_award_id":"CCF-2046488","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G474467374","display_name":null,"funder_award_id":"2046488","funder_id":"https://openalex.org/F4320337387","funder_display_name":"Division of Computing and Communication Foundations"},{"id":"https://openalex.org/G6215854850","display_name":null,"funder_award_id":"1746047","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6296162328","display_name":null,"funder_award_id":"1850502","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8479618618","display_name":null,"funder_award_id":"1850502","funder_id":"https://openalex.org/F4320337387","funder_display_name":"Division of Computing and Communication Foundations"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320320320","display_name":"Rosetrees Trust","ror":"https://ror.org/04e3zg361"},{"id":"https://openalex.org/F4320337387","display_name":"Division of Computing and Communication Foundations","ror":"https://ror.org/01mng8331"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":45,"referenced_works":["https://openalex.org/W884650706","https://openalex.org/W1978309142","https://openalex.org/W1987971958","https://openalex.org/W2006288875","https://openalex.org/W2016661249","https://openalex.org/W2050146329","https://openalex.org/W2073338313","https://openalex.org/W2086433997","https://openalex.org/W2096746187","https://openalex.org/W2101151845","https://openalex.org/W2103441770","https://openalex.org/W2121144826","https://openalex.org/W2121743948","https://openalex.org/W2123303153","https://openalex.org/W2138615112","https://openalex.org/W2151530263","https://openalex.org/W2153056550","https://openalex.org/W2155729465","https://openalex.org/W2170490448","https://openalex.org/W2171073562","https://openalex.org/W2405513305","https://openalex.org/W2531887049","https://openalex.org/W2609243345","https://openalex.org/W2617530335","https://openalex.org/W2781608882","https://openalex.org/W2884903585","https://openalex.org/W2898789672","https://openalex.org/W2952708922","https://openalex.org/W2985155561","https://openalex.org/W3006500278","https://openalex.org/W3027643991","https://openalex.org/W3081916416","https://openalex.org/W3082136743","https://openalex.org/W3082714866","https://openalex.org/W3119672763","https://openalex.org/W3124945471","https://openalex.org/W3125673614","https://openalex.org/W3137654632","https://openalex.org/W3142571537","https://openalex.org/W3162847526","https://openalex.org/W3180955285","https://openalex.org/W4210516674","https://openalex.org/W4235169531","https://openalex.org/W4242628327","https://openalex.org/W4256522398"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2898732673","https://openalex.org/W4379231730","https://openalex.org/W2410053581","https://openalex.org/W2383658677","https://openalex.org/W3123203398","https://openalex.org/W4389858081","https://openalex.org/W2501551404","https://openalex.org/W4298131179","https://openalex.org/W1972473893"],"abstract_inverted_index":{"Copy-number":[0],"aberrations":[1],"(CNAs)":[2],"are":[3,20,84],"genetic":[4],"alterations":[5],"that":[6,56,83,157,180,228],"amplify":[7],"or":[8,77,105],"delete":[9],"the":[10,46,52,70,90,100,106,115,159,170,186,223],"number":[11],"of":[12,14,29,45,102,108,117,128,141,172],"copies":[13],"large":[15],"genomic":[16,75,81],"segments.":[17],"Although":[18],"they":[19],"ubiquitous":[21],"in":[22,99,114,244],"cancer":[23,31,212],"and,":[24],"thus,":[25],"a":[26,154],"critical":[27],"area":[28],"current":[30],"research,":[32],"CNA":[33],"identification":[34,127],"from":[35,209,222],"DNA":[36,206,219],"sequencing":[37,207,220],"data":[38,221],"is":[39],"challenging":[40],"because":[41],"it":[42],"requires":[43],"partitioning":[44],"genome":[47],"into":[48],"complex":[49],"segments":[50],"with":[51,216],"same":[53,224],"copy-number":[54,149,246],"states":[55],"may":[57],"not":[58],"be":[59],"contiguous.":[60],"Existing":[61],"segmentation":[62,122,192,199,240],"algorithms":[63],"address":[64],"these":[65],"challenges":[66],"either":[67],"by":[68,78,86,181,229],"leveraging":[69],"local":[71,103,164,196],"information":[72],"among":[73],"neighboring":[74],"regions,":[76],"globally":[79],"grouping":[80],"regions":[82],"affected":[85],"similar":[87],"CNAs":[88,113],"across":[89],"entire":[91],"genome.":[92],"However,":[93],"both":[94],"approaches":[95],"have":[96],"limitations:":[97],"overclustering":[98],"case":[101,116],"segmentation,":[104,150,167],"omission":[107],"clusters":[109],"corresponding":[110],"to":[111,125,161,188,194,236],"focal":[112],"global":[118,166,198],"segmentation.":[119],"Importantly,":[120],"inaccurate":[121,126],"will":[123],"lead":[124],"CNAs.":[129],"For":[130],"this":[131],"reason,":[132],"most":[133],"pan-cancer":[134],"research":[135],"studies":[136],"rely":[137],"on":[138],"manual":[139],"procedures":[140],"quality":[142],"control":[143],"and":[144,165,197,241],"anomaly":[145],"correction.":[146],"To":[147],"improve":[148],"we":[151,178,202,226],"introduce":[152],"CNAViz,":[153,231],"web-based":[155],"tool":[156],"enables":[158],"user":[160,187,233],"simultaneously":[162],"perform":[163],"thus":[168],"overcoming":[169],"limitations":[171],"each":[173],"approach.":[174],"Using":[175],"simulated":[176],"data,":[177],"demonstrate":[179],"several":[182],"metrics,":[183],"CNAViz":[184],"allows":[185],"obtain":[189,237],"more":[190,238],"accurate":[191,239],"relative":[193],"existing":[195],"methods.":[200],"Moreover,":[201],"analyze":[203],"six":[204],"bulk":[205],"samples":[208],"three":[210],"breast":[211],"patients.":[213],"By":[214],"validating":[215],"parallel":[217],"single-cell":[218],"samples,":[225],"show":[227],"using":[230],"our":[232],"was":[234],"able":[235],"improved":[242],"accuracy":[243],"downstream":[245],"calling.":[247]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
