{"id":"https://openalex.org/W4305057907","doi":"https://doi.org/10.1371/journal.pcbi.1010533","title":"Calibrating spatiotemporal models of microbial communities to microscopy data: A review","display_name":"Calibrating spatiotemporal models of microbial communities to microscopy data: A review","publication_year":2022,"publication_date":"2022-10-13","ids":{"openalex":"https://openalex.org/W4305057907","doi":"https://doi.org/10.1371/journal.pcbi.1010533","pmid":"https://pubmed.ncbi.nlm.nih.gov/36227846"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1010533","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010533","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010533&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010533&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5051629003","display_name":"Aaron Yip","orcid":"https://orcid.org/0000-0002-4442-0432"},"institutions":[{"id":"https://openalex.org/I151746483","display_name":"University of Waterloo","ror":"https://ror.org/01aff2v68","country_code":"CA","type":"education","lineage":["https://openalex.org/I151746483"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Aaron Yip","raw_affiliation_strings":["Department of Chemical Engineering, University of Waterloo, Ontario, Canada"],"raw_orcid":"https://orcid.org/0000-0002-4442-0432","affiliations":[{"raw_affiliation_string":"Department of Chemical Engineering, University of Waterloo, Ontario, Canada","institution_ids":["https://openalex.org/I151746483"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074652664","display_name":"Julien Smith-Roberge","orcid":null},"institutions":[{"id":"https://openalex.org/I151746483","display_name":"University of Waterloo","ror":"https://ror.org/01aff2v68","country_code":"CA","type":"education","lineage":["https://openalex.org/I151746483"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Julien Smith-Roberge","raw_affiliation_strings":["Department of Applied Mathematics, University of Waterloo, Ontario, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Applied Mathematics, University of Waterloo, Ontario, Canada","institution_ids":["https://openalex.org/I151746483"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086859849","display_name":"Sara Haghayegh Khorasani","orcid":"https://orcid.org/0000-0002-8661-5326"},"institutions":[{"id":"https://openalex.org/I151746483","display_name":"University of Waterloo","ror":"https://ror.org/01aff2v68","country_code":"CA","type":"education","lineage":["https://openalex.org/I151746483"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Sara Haghayegh Khorasani","raw_affiliation_strings":["Department of Chemical Engineering, University of Waterloo, Ontario, Canada"],"raw_orcid":"https://orcid.org/0000-0002-8661-5326","affiliations":[{"raw_affiliation_string":"Department of Chemical Engineering, University of Waterloo, Ontario, Canada","institution_ids":["https://openalex.org/I151746483"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023781129","display_name":"Marc G. Aucoin","orcid":"https://orcid.org/0000-0001-9393-5558"},"institutions":[{"id":"https://openalex.org/I151746483","display_name":"University of Waterloo","ror":"https://ror.org/01aff2v68","country_code":"CA","type":"education","lineage":["https://openalex.org/I151746483"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Marc G. Aucoin","raw_affiliation_strings":["Department of Chemical Engineering, University of Waterloo, Ontario, Canada"],"raw_orcid":"https://orcid.org/0000-0001-9393-5558","affiliations":[{"raw_affiliation_string":"Department of Chemical Engineering, University of Waterloo, Ontario, Canada","institution_ids":["https://openalex.org/I151746483"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5014787617","display_name":"Brian Ingalls","orcid":"https://orcid.org/0000-0003-2118-3881"},"institutions":[{"id":"https://openalex.org/I151746483","display_name":"University of Waterloo","ror":"https://ror.org/01aff2v68","country_code":"CA","type":"education","lineage":["https://openalex.org/I151746483"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Brian P. Ingalls","raw_affiliation_strings":["Department of Applied Mathematics, University of Waterloo, Ontario, Canada","Department of Chemical Engineering, University of Waterloo, Ontario, Canada"],"raw_orcid":"https://orcid.org/0000-0003-2118-3881","affiliations":[{"raw_affiliation_string":"Department of Applied Mathematics, University of Waterloo, Ontario, Canada","institution_ids":["https://openalex.org/I151746483"]},{"raw_affiliation_string":"Department of Chemical Engineering, University of Waterloo, Ontario, Canada","institution_ids":["https://openalex.org/I151746483"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5014787617"],"corresponding_institution_ids":["https://openalex.org/I151746483"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":0.5208,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.62207451,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"18","issue":"10","first_page":"e1010533","last_page":"e1010533"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9907000064849854,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9860000014305115,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7176774144172668},{"id":"https://openalex.org/keywords/calibration","display_name":"Calibration","score":0.6986672878265381},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5232702493667603},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.49685409665107727},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.48665839433670044},{"id":"https://openalex.org/keywords/model-selection","display_name":"Model selection","score":0.42528632283210754},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3860819339752197},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.13076013326644897},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.100455641746521}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7176774144172668},{"id":"https://openalex.org/C165838908","wikidata":"https://www.wikidata.org/wiki/Q736777","display_name":"Calibration","level":2,"score":0.6986672878265381},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5232702493667603},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.49685409665107727},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.48665839433670044},{"id":"https://openalex.org/C93959086","wikidata":"https://www.wikidata.org/wiki/Q6888345","display_name":"Model selection","level":2,"score":0.42528632283210754},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3860819339752197},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.13076013326644897},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.100455641746521}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002138","descriptor_name":"Calibration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002138","descriptor_name":"Calibration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002138","descriptor_name":"Calibration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058448","descriptor_name":"Biota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058448","descriptor_name":"Biota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058448","descriptor_name":"Biota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1371/journal.pcbi.1010533","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010533","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010533&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:36227846","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36227846","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:doaj.org/article:44a4c65136144ae68ae1e1b9a9707bf3","is_oa":true,"landing_page_url":"https://doaj.org/article/44a4c65136144ae68ae1e1b9a9707bf3","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 18, Iss 10, p e1010533 (2022)","raw_type":"article"},{"id":"pmh:oai:doaj.org/article:cc4100541e9c4ac285b96a8df4605532","is_oa":true,"landing_page_url":"https://doaj.org/article/cc4100541e9c4ac285b96a8df4605532","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 18, Iss 10 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9560168","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9560168","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1010533","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010533","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010533&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2528576598","display_name":null,"funder_award_id":"RGPIN-2018-03826","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G2980479518","display_name":null,"funder_award_id":"RGPIN-2018","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G8597906072","display_name":null,"funder_award_id":"355513-2017","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"}],"funders":[{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4305057907.pdf","grobid_xml":"https://content.openalex.org/works/W4305057907.grobid-xml"},"referenced_works_count":157,"referenced_works":["https://openalex.org/W596688237","https://openalex.org/W1265389026","https://openalex.org/W1509329028","https://openalex.org/W1518783225","https://openalex.org/W1921951426","https://openalex.org/W1923542820","https://openalex.org/W1958874623","https://openalex.org/W1966431070","https://openalex.org/W1966499072","https://openalex.org/W1969782428","https://openalex.org/W1974148346","https://openalex.org/W1981892387","https://openalex.org/W1987037733","https://openalex.org/W1995291300","https://openalex.org/W1995875735","https://openalex.org/W1996666978","https://openalex.org/W1999425652","https://openalex.org/W2000060114","https://openalex.org/W2002883084","https://openalex.org/W2006012747","https://openalex.org/W2007199546","https://openalex.org/W2017260681","https://openalex.org/W2038747990","https://openalex.org/W2041105023","https://openalex.org/W2046194150","https://openalex.org/W2047734227","https://openalex.org/W2048711666","https://openalex.org/W2049106070","https://openalex.org/W2049242968","https://openalex.org/W2050229509","https://openalex.org/W2052163430","https://openalex.org/W2053830048","https://openalex.org/W2054137409","https://openalex.org/W2071004726","https://openalex.org/W2073621147","https://openalex.org/W2080001285","https://openalex.org/W2081482096","https://openalex.org/W2083983731","https://openalex.org/W2086128646","https://openalex.org/W2089468765","https://openalex.org/W2089996360","https://openalex.org/W2090304005","https://openalex.org/W2090507918","https://openalex.org/W2094705424","https://openalex.org/W2098919112","https://openalex.org/W2100779479","https://openalex.org/W2103006018","https://openalex.org/W2106944478","https://openalex.org/W2109353395","https://openalex.org/W2110966879","https://openalex.org/W2115445832","https://openalex.org/W2129823023","https://openalex.org/W2135320834","https://openalex.org/W2137502790","https://openalex.org/W2138835511","https://openalex.org/W2140862057","https://openalex.org/W2143969246","https://openalex.org/W2145139936","https://openalex.org/W2145408484","https://openalex.org/W2145945191","https://openalex.org/W2146331300","https://openalex.org/W2149922189","https://openalex.org/W2153248731","https://openalex.org/W2159482231","https://openalex.org/W2159974882","https://openalex.org/W2161946448","https://openalex.org/W2162062941","https://openalex.org/W2162539672","https://openalex.org/W2164832169","https://openalex.org/W2214324097","https://openalex.org/W2293835680","https://openalex.org/W2308235187","https://openalex.org/W2318584550","https://openalex.org/W2323024305","https://openalex.org/W2336498335","https://openalex.org/W2343359885","https://openalex.org/W2409712506","https://openalex.org/W2434315415","https://openalex.org/W2510033753","https://openalex.org/W2566890378","https://openalex.org/W2579737313","https://openalex.org/W2587248289","https://openalex.org/W2594389980","https://openalex.org/W2595761612","https://openalex.org/W2598322167","https://openalex.org/W2603195168","https://openalex.org/W2603321043","https://openalex.org/W2610000088","https://openalex.org/W2619941821","https://openalex.org/W2625497715","https://openalex.org/W2744176666","https://openalex.org/W2746744529","https://openalex.org/W2758694956","https://openalex.org/W2766085454","https://openalex.org/W2790132182","https://openalex.org/W2793562878","https://openalex.org/W2793711513","https://openalex.org/W2807369386","https://openalex.org/W2808193444","https://openalex.org/W2809204052","https://openalex.org/W2809425738","https://openalex.org/W2809585793","https://openalex.org/W2810755205","https://openalex.org/W2883057110","https://openalex.org/W2889851140","https://openalex.org/W2890235991","https://openalex.org/W2894591265","https://openalex.org/W2894617794","https://openalex.org/W2900124429","https://openalex.org/W2900643491","https://openalex.org/W2901383174","https://openalex.org/W2902681497","https://openalex.org/W2904212085","https://openalex.org/W2917868694","https://openalex.org/W2949003365","https://openalex.org/W2949592134","https://openalex.org/W2950276893","https://openalex.org/W2954419416","https://openalex.org/W2958202299","https://openalex.org/W2964524361","https://openalex.org/W2971439707","https://openalex.org/W2976185208","https://openalex.org/W2977423002","https://openalex.org/W2979347585","https://openalex.org/W2980801074","https://openalex.org/W2996352770","https://openalex.org/W3004784263","https://openalex.org/W3005423028","https://openalex.org/W3012826299","https://openalex.org/W3014671498","https://openalex.org/W3014741277","https://openalex.org/W3017688946","https://openalex.org/W3025554915","https://openalex.org/W3031013352","https://openalex.org/W3031424018","https://openalex.org/W3034164370","https://openalex.org/W3044445219","https://openalex.org/W3083316048","https://openalex.org/W3089617693","https://openalex.org/W3092361276","https://openalex.org/W3108937084","https://openalex.org/W3110126369","https://openalex.org/W3110340257","https://openalex.org/W3110764639","https://openalex.org/W3111227863","https://openalex.org/W3153751420","https://openalex.org/W3162768880","https://openalex.org/W3201390577","https://openalex.org/W3202868818","https://openalex.org/W3204234525","https://openalex.org/W3206959204","https://openalex.org/W3211359583","https://openalex.org/W4207075896","https://openalex.org/W4254772338","https://openalex.org/W6662396301","https://openalex.org/W6675276785","https://openalex.org/W6796041746"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W2114770238","https://openalex.org/W4224009465","https://openalex.org/W2365607528","https://openalex.org/W2046724649","https://openalex.org/W2555586164","https://openalex.org/W4306674287","https://openalex.org/W2030747924","https://openalex.org/W4286629047","https://openalex.org/W1499374895"],"abstract_inverted_index":{"Spatiotemporal":[0],"models":[1,43],"that":[2,96,108,144],"account":[3],"for":[4,13,112,130,147,162],"heterogeneity":[5],"within":[6],"microbial":[7,102,135],"communities":[8,103],"rely":[9],"on":[10],"single-cell":[11,93],"data":[12,38,46],"calibration":[14,78,106,119],"and":[15,23,37,58,104,158],"validation.":[16],"Such":[17],"data,":[18],"commonly":[19],"collected":[20],"via":[21],"microscopy":[22],"flow":[24],"cytometry,":[25],"have":[26,61,122],"been":[27,63],"made":[28],"more":[29],"accessible":[30],"by":[31,70],"recent":[32],"advances":[33],"in":[34,75,134],"microfluidics":[35],"platforms":[36],"processing":[39],"pipelines.":[40],"However,":[41],"validating":[42],"against":[44],"such":[45],"poses":[47],"significant":[48],"challenges.":[49],"Validation":[50],"practices":[51],"vary":[52],"widely":[53,64],"between":[54],"modelling":[55],"studies;":[56],"systematic":[57,77],"rigorous":[59],"methods":[60],"not":[62],"adopted.":[65],"Similar":[66],"challenges":[67],"are":[68,80,97,109],"faced":[69],"the":[71,105],"(macrobial)":[72],"ecology":[73],"community,":[74],"which":[76],"approaches":[79,161],"often":[81],"employed":[82,111],"to":[83,100],"improve":[84],"quantitative":[85],"predictions":[86],"from":[87],"computational":[88],"models.":[89,115],"Here,":[90],"we":[91,121,138],"review":[92],"observation":[94],"techniques":[95,143],"being":[98,110],"applied":[99],"study":[101],"strategies":[107],"accompanying":[113],"spatiotemporal":[114,132],"To":[116],"facilitate":[117],"future":[118],"efforts,":[120],"compiled":[123],"a":[124],"list":[125],"of":[126,154],"summary":[127,155],"statistics":[128],"relevant":[129],"quantifying":[131],"patterns":[133],"communities.":[136],"Finally,":[137],"highlight":[139],"some":[140],"recently":[141],"developed":[142],"hold":[145],"promise":[146],"improved":[148],"model":[149,164],"calibration,":[150],"including":[151],"algorithmic":[152],"guidance":[153],"statistic":[156],"selection":[157],"machine":[159],"learning":[160],"efficient":[163],"simulation.":[165]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
