{"id":"https://openalex.org/W4295880122","doi":"https://doi.org/10.1371/journal.pcbi.1010492","title":"RNA velocity unraveled","display_name":"RNA velocity unraveled","publication_year":2022,"publication_date":"2022-09-12","ids":{"openalex":"https://openalex.org/W4295880122","doi":"https://doi.org/10.1371/journal.pcbi.1010492","pmid":"https://pubmed.ncbi.nlm.nih.gov/36094956"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1010492","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010492","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010492&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010492&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5041010223","display_name":"Gennady Gorin","orcid":"https://orcid.org/0000-0001-6097-2029"},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Gennady Gorin","raw_affiliation_strings":["Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California, United States of America"],"raw_orcid":"https://orcid.org/0000-0001-6097-2029","affiliations":[{"raw_affiliation_string":"Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California, United States of America","institution_ids":["https://openalex.org/I122411786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058813323","display_name":"Meichen Fang","orcid":"https://orcid.org/0000-0002-8217-0710"},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Meichen Fang","raw_affiliation_strings":["Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, California, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-8217-0710","affiliations":[{"raw_affiliation_string":"Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, California, United States of America","institution_ids":["https://openalex.org/I122411786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014033824","display_name":"Tara Chari","orcid":"https://orcid.org/0000-0002-6953-4313"},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Tara Chari","raw_affiliation_strings":["Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, California, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-6953-4313","affiliations":[{"raw_affiliation_string":"Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, California, United States of America","institution_ids":["https://openalex.org/I122411786"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5020008219","display_name":"Lior Pachter","orcid":"https://orcid.org/0000-0002-9164-6231"},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Lior Pachter","raw_affiliation_strings":["Department of Computing and Mathematical Sciences, California Institute of Technology, Pasadena, California, United States of America","Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, California, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-9164-6231","affiliations":[{"raw_affiliation_string":"Department of Computing and Mathematical Sciences, California Institute of Technology, Pasadena, California, United States of America","institution_ids":["https://openalex.org/I122411786"]},{"raw_affiliation_string":"Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, California, United States of America","institution_ids":["https://openalex.org/I122411786"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5014033824","https://openalex.org/A5020008219","https://openalex.org/A5041010223","https://openalex.org/A5058813323"],"corresponding_institution_ids":["https://openalex.org/I122411786"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":14.5817,"has_fulltext":true,"cited_by_count":181,"citation_normalized_percentile":{"value":0.99510519,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"18","issue":"9","first_page":"e1010492","last_page":"e1010492"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.989799976348877,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7107793092727661},{"id":"https://openalex.org/keywords/implementation","display_name":"Implementation","score":0.633930504322052},{"id":"https://openalex.org/keywords/sensitivity","display_name":"Sensitivity (control systems)","score":0.6168792247772217},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5886152982711792},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4599560499191284},{"id":"https://openalex.org/keywords/exposition","display_name":"Exposition (narrative)","score":0.45514941215515137},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.39719197154045105},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.16225117444992065},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.09729617834091187}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7107793092727661},{"id":"https://openalex.org/C26713055","wikidata":"https://www.wikidata.org/wiki/Q245962","display_name":"Implementation","level":2,"score":0.633930504322052},{"id":"https://openalex.org/C21200559","wikidata":"https://www.wikidata.org/wiki/Q7451068","display_name":"Sensitivity (control systems)","level":2,"score":0.6168792247772217},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5886152982711792},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4599560499191284},{"id":"https://openalex.org/C2776285698","wikidata":"https://www.wikidata.org/wiki/Q2642214","display_name":"Exposition (narrative)","level":2,"score":0.45514941215515137},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.39719197154045105},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.16225117444992065},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.09729617834091187},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0},{"id":"https://openalex.org/C124952713","wikidata":"https://www.wikidata.org/wiki/Q8242","display_name":"Literature","level":1,"score":0.0},{"id":"https://openalex.org/C24326235","wikidata":"https://www.wikidata.org/wiki/Q126095","display_name":"Electronic engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1371/journal.pcbi.1010492","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010492","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010492&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:36094956","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36094956","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:authors.library.caltech.edu:116968","is_oa":false,"landing_page_url":"https://authors.library.caltech.edu/116968/","pdf_url":null,"source":{"id":"https://openalex.org/S4306402161","display_name":"CaltechAUTHORS (California Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I122411786","host_organization_name":"California Institute of Technology","host_organization_lineage":["https://openalex.org/I122411786"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:doaj.org/article:7e761d3aaae24babbd862289e8ed3f97","is_oa":true,"landing_page_url":"https://doaj.org/article/7e761d3aaae24babbd862289e8ed3f97","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 18, Iss 9, p e1010492 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9499228","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9499228","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1010492","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010492","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010492&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/13","display_name":"Climate action","score":0.4300000071525574}],"awards":[{"id":"https://openalex.org/G3683686169","display_name":null,"funder_award_id":"U19MH114830","funder_id":"https://openalex.org/F4320337346","funder_display_name":"National Institute of Mental Health"},{"id":"https://openalex.org/G4760074400","display_name":null,"funder_award_id":"U19MH114830","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337346","display_name":"National Institute of Mental Health","ror":"https://ror.org/04xeg9z08"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4295880122.pdf","grobid_xml":"https://content.openalex.org/works/W4295880122.grobid-xml"},"referenced_works_count":200,"referenced_works":["https://openalex.org/W565175910","https://openalex.org/W1510900750","https://openalex.org/W1976714996","https://openalex.org/W1984429906","https://openalex.org/W1984883254","https://openalex.org/W1988714210","https://openalex.org/W1992927069","https://openalex.org/W2001798854","https://openalex.org/W2005361347","https://openalex.org/W2018944012","https://openalex.org/W2030070978","https://openalex.org/W2036983007","https://openalex.org/W2042321087","https://openalex.org/W2066594542","https://openalex.org/W2067630518","https://openalex.org/W2068751516","https://openalex.org/W2074097219","https://openalex.org/W2075251971","https://openalex.org/W2077322578","https://openalex.org/W2080252570","https://openalex.org/W2088760574","https://openalex.org/W2099793004","https://openalex.org/W2101810447","https://openalex.org/W2102787760","https://openalex.org/W2104254083","https://openalex.org/W2113053834","https://openalex.org/W2117762572","https://openalex.org/W2121793131","https://openalex.org/W2122121413","https://openalex.org/W2123012564","https://openalex.org/W2124361485","https://openalex.org/W2127535453","https://openalex.org/W2128120736","https://openalex.org/W2130596496","https://openalex.org/W2134672468","https://openalex.org/W2137088684","https://openalex.org/W2139199979","https://openalex.org/W2141688036","https://openalex.org/W2143447881","https://openalex.org/W2145748272","https://openalex.org/W2155804510","https://openalex.org/W2157999920","https://openalex.org/W2159055782","https://openalex.org/W2167244112","https://openalex.org/W2177009097","https://openalex.org/W2181255501","https://openalex.org/W2183676805","https://openalex.org/W2211016425","https://openalex.org/W2265892941","https://openalex.org/W2268351591","https://openalex.org/W2289395881","https://openalex.org/W2323326409","https://openalex.org/W2344881354","https://openalex.org/W2345179863","https://openalex.org/W2398184959","https://openalex.org/W2518662817","https://openalex.org/W2533012945","https://openalex.org/W2582033455","https://openalex.org/W2588694271","https://openalex.org/W2594807826","https://openalex.org/W2615816755","https://openalex.org/W2621349699","https://openalex.org/W2625783081","https://openalex.org/W2746479894","https://openalex.org/W2760415787","https://openalex.org/W2760463524","https://openalex.org/W2764169974","https://openalex.org/W2766437506","https://openalex.org/W2768250222","https://openalex.org/W2785668899","https://openalex.org/W2786690691","https://openalex.org/W2791634322","https://openalex.org/W2792693509","https://openalex.org/W2795460076","https://openalex.org/W2806524706","https://openalex.org/W2809616137","https://openalex.org/W2810696621","https://openalex.org/W2811137963","https://openalex.org/W2895322450","https://openalex.org/W2895602577","https://openalex.org/W2896156331","https://openalex.org/W2899067706","https://openalex.org/W2899348912","https://openalex.org/W2901308272","https://openalex.org/W2901677030","https://openalex.org/W2901744941","https://openalex.org/W2906180136","https://openalex.org/W2927507212","https://openalex.org/W2947216895","https://openalex.org/W2948517648","https://openalex.org/W2949237386","https://openalex.org/W2950372712","https://openalex.org/W2950519970","https://openalex.org/W2950583356","https://openalex.org/W2951268343","https://openalex.org/W2951444558","https://openalex.org/W2951506174","https://openalex.org/W2951911538","https://openalex.org/W2952580930","https://openalex.org/W2952840385","https://openalex.org/W2953405766","https://openalex.org/W2953852587","https://openalex.org/W2981460971","https://openalex.org/W2989747508","https://openalex.org/W2989985381","https://openalex.org/W2997280954","https://openalex.org/W2998065416","https://openalex.org/W3000145506","https://openalex.org/W3006042561","https://openalex.org/W3006800618","https://openalex.org/W3007264533","https://openalex.org/W3009609875","https://openalex.org/W3010742608","https://openalex.org/W3013151148","https://openalex.org/W3013163248","https://openalex.org/W3013599686","https://openalex.org/W3013821085","https://openalex.org/W3013936092","https://openalex.org/W3021060601","https://openalex.org/W3040819442","https://openalex.org/W3045053780","https://openalex.org/W3047141442","https://openalex.org/W3047392293","https://openalex.org/W3048152825","https://openalex.org/W3088401235","https://openalex.org/W3098666977","https://openalex.org/W3105727837","https://openalex.org/W3106241387","https://openalex.org/W3114793313","https://openalex.org/W3119249186","https://openalex.org/W3121112961","https://openalex.org/W3125980488","https://openalex.org/W3126629478","https://openalex.org/W3130012433","https://openalex.org/W3131529660","https://openalex.org/W3134241784","https://openalex.org/W3134266784","https://openalex.org/W3136569600","https://openalex.org/W3137366663","https://openalex.org/W3145635506","https://openalex.org/W3157094484","https://openalex.org/W3157384750","https://openalex.org/W3161430171","https://openalex.org/W3161618053","https://openalex.org/W3163881056","https://openalex.org/W3164527855","https://openalex.org/W3165176581","https://openalex.org/W3165360138","https://openalex.org/W3169392527","https://openalex.org/W3169494650","https://openalex.org/W3171488579","https://openalex.org/W3174608384","https://openalex.org/W3186637316","https://openalex.org/W3194520274","https://openalex.org/W3196956068","https://openalex.org/W3197020116","https://openalex.org/W3198536560","https://openalex.org/W3199346329","https://openalex.org/W3204119535","https://openalex.org/W3206184033","https://openalex.org/W3209211486","https://openalex.org/W3214478476","https://openalex.org/W3215961257","https://openalex.org/W4200278514","https://openalex.org/W4205496949","https://openalex.org/W4205569118","https://openalex.org/W4210494137","https://openalex.org/W4210575300","https://openalex.org/W4210587306","https://openalex.org/W4210832276","https://openalex.org/W4220765701","https://openalex.org/W4225981439","https://openalex.org/W4231157025","https://openalex.org/W4239833133","https://openalex.org/W4242101099","https://openalex.org/W4245699060","https://openalex.org/W4250112963","https://openalex.org/W4283158426","https://openalex.org/W4285254634","https://openalex.org/W4299157219","https://openalex.org/W4300223101","https://openalex.org/W4301028492","https://openalex.org/W4301421397","https://openalex.org/W4311676301","https://openalex.org/W4311895189","https://openalex.org/W4313255175","https://openalex.org/W4320719433","https://openalex.org/W4362597581","https://openalex.org/W4385945347","https://openalex.org/W4387966382","https://openalex.org/W6733519689","https://openalex.org/W6756444047","https://openalex.org/W6764856668","https://openalex.org/W6781354423","https://openalex.org/W6784824514","https://openalex.org/W6796980570","https://openalex.org/W6799158615","https://openalex.org/W6800415945","https://openalex.org/W7002181973","https://openalex.org/W7039294642"],"related_works":["https://openalex.org/W2356114564","https://openalex.org/W2350151408","https://openalex.org/W2380661758","https://openalex.org/W3005974700","https://openalex.org/W3006355877","https://openalex.org/W3165905718","https://openalex.org/W3006351327","https://openalex.org/W2327984862","https://openalex.org/W1515987003","https://openalex.org/W2371230950"],"abstract_inverted_index":{"We":[0],"perform":[1,38],"a":[2,10,27,58,67],"thorough":[3],"analysis":[4,71],"of":[5,16,30,80],"RNA":[6,63],"velocity":[7],"methods,":[8],"with":[9],"view":[11],"towards":[12],"understanding":[13],"the":[14,17,31],"suitability":[15],"various":[18],"assumptions":[19],"underlying":[20,32,52],"popular":[21],"implementations.":[22],"In":[23],"addition":[24],"to":[25,44,48,62,74],"providing":[26],"self-contained":[28],"exposition":[29],"mathematics,":[33],"we":[34,55],"undertake":[35],"simulations":[36],"and":[37,51,65,78],"controlled":[39],"experiments":[40],"on":[41],"biological":[42],"datasets":[43],"assess":[45],"workflow":[46],"sensitivity":[47],"parameter":[49],"choices":[50],"biology.":[53],"Finally,":[54],"argue":[56],"for":[57,69,76],"more":[59],"rigorous":[60],"approach":[61],"velocity,":[64],"present":[66],"framework":[68],"Markovian":[70],"that":[72],"points":[73],"directions":[75],"improvement":[77],"mitigation":[79],"current":[81],"problems.":[82]},"counts_by_year":[{"year":2026,"cited_by_count":12},{"year":2025,"cited_by_count":52},{"year":2024,"cited_by_count":56},{"year":2023,"cited_by_count":49},{"year":2022,"cited_by_count":11},{"year":2021,"cited_by_count":1}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
