{"id":"https://openalex.org/W4293069966","doi":"https://doi.org/10.1371/journal.pcbi.1010422","title":"Recombination-aware phylogeographic inference using the structured coalescent with ancestral recombination","display_name":"Recombination-aware phylogeographic inference using the structured coalescent with ancestral recombination","publication_year":2022,"publication_date":"2022-08-19","ids":{"openalex":"https://openalex.org/W4293069966","doi":"https://doi.org/10.1371/journal.pcbi.1010422","pmid":"https://pubmed.ncbi.nlm.nih.gov/35984849"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1010422","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010422","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010422&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010422&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5021800636","display_name":"Fangfang Guo","orcid":"https://orcid.org/0000-0002-0759-0352"},"institutions":[{"id":"https://openalex.org/I137902535","display_name":"North Carolina State University","ror":"https://ror.org/04tj63d06","country_code":"US","type":"education","lineage":["https://openalex.org/I137902535"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Fangfang Guo","raw_affiliation_strings":["Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, North Carolina, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-0759-0352","affiliations":[{"raw_affiliation_string":"Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, North Carolina, United States of America","institution_ids":["https://openalex.org/I137902535"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015592178","display_name":"Ignazio Carbone","orcid":"https://orcid.org/0000-0003-2721-6656"},"institutions":[{"id":"https://openalex.org/I137902535","display_name":"North Carolina State University","ror":"https://ror.org/04tj63d06","country_code":"US","type":"education","lineage":["https://openalex.org/I137902535"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ignazio Carbone","raw_affiliation_strings":["Center for Integrated Fungal Research, North Carolina State University, Raleigh, North Carolina, United States of America","Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, North Carolina, United States of America"],"raw_orcid":"https://orcid.org/0000-0003-2721-6656","affiliations":[{"raw_affiliation_string":"Center for Integrated Fungal Research, North Carolina State University, Raleigh, North Carolina, United States of America","institution_ids":["https://openalex.org/I137902535"]},{"raw_affiliation_string":"Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, North Carolina, United States of America","institution_ids":["https://openalex.org/I137902535"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058082988","display_name":"David A. Rasmussen","orcid":"https://orcid.org/0000-0001-9457-7561"},"institutions":[{"id":"https://openalex.org/I137902535","display_name":"North Carolina State University","ror":"https://ror.org/04tj63d06","country_code":"US","type":"education","lineage":["https://openalex.org/I137902535"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"David A. Rasmussen","raw_affiliation_strings":["Bioinformatics Research Center, North Carolina State University, Raleigh, North Carolina, United States of America","Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, North Carolina, United States of America"],"raw_orcid":"https://orcid.org/0000-0001-9457-7561","affiliations":[{"raw_affiliation_string":"Bioinformatics Research Center, North Carolina State University, Raleigh, North Carolina, United States of America","institution_ids":["https://openalex.org/I137902535"]},{"raw_affiliation_string":"Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, North Carolina, United States of America","institution_ids":["https://openalex.org/I137902535"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5058082988"],"corresponding_institution_ids":["https://openalex.org/I137902535"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":1.402,"has_fulltext":true,"cited_by_count":12,"citation_normalized_percentile":{"value":0.78291479,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"18","issue":"8","first_page":"e1010422","last_page":"e1010422"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10825","display_name":"Plant Pathogens and Fungal Diseases","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10825","display_name":"Plant Pathogens and Fungal Diseases","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10497","display_name":"Fungal and yeast genetics research","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10733","display_name":"Wheat and Barley Genetics and Pathology","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/coalescent-theory","display_name":"Coalescent theory","score":0.9530928730964661},{"id":"https://openalex.org/keywords/phylogeography","display_name":"Phylogeography","score":0.6665838956832886},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6632995009422302},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.6558037400245667},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6519728899002075},{"id":"https://openalex.org/keywords/recombination","display_name":"Recombination","score":0.6267666816711426},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.5243732929229736},{"id":"https://openalex.org/keywords/population-genetics","display_name":"Population genetics","score":0.4964016079902649},{"id":"https://openalex.org/keywords/approximate-bayesian-computation","display_name":"Approximate Bayesian computation","score":0.47297847270965576},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4611627459526062},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.33454805612564087},{"id":"https://openalex.org/keywords/phylogenetics","display_name":"Phylogenetics","score":0.27694350481033325},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.15656283497810364},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.09444427490234375},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.08212018013000488}],"concepts":[{"id":"https://openalex.org/C2554327","wikidata":"https://www.wikidata.org/wiki/Q2698599","display_name":"Coalescent theory","level":4,"score":0.9530928730964661},{"id":"https://openalex.org/C94043034","wikidata":"https://www.wikidata.org/wiki/Q377756","display_name":"Phylogeography","level":4,"score":0.6665838956832886},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6632995009422302},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.6558037400245667},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6519728899002075},{"id":"https://openalex.org/C156695909","wikidata":"https://www.wikidata.org/wiki/Q3373825","display_name":"Recombination","level":3,"score":0.6267666816711426},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5243732929229736},{"id":"https://openalex.org/C85721925","wikidata":"https://www.wikidata.org/wiki/Q31151","display_name":"Population genetics","level":3,"score":0.4964016079902649},{"id":"https://openalex.org/C2779377595","wikidata":"https://www.wikidata.org/wiki/Q21045424","display_name":"Approximate Bayesian computation","level":3,"score":0.47297847270965576},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4611627459526062},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.33454805612564087},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.27694350481033325},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.15656283497810364},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.09444427490234375},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.08212018013000488},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011156","descriptor_name":"Population Density","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011156","descriptor_name":"Population Density","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011156","descriptor_name":"Population Density","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011156","descriptor_name":"Population Density","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011995","descriptor_name":"Recombination, Genetic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011995","descriptor_name":"Recombination, Genetic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011995","descriptor_name":"Recombination, Genetic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011995","descriptor_name":"Recombination, Genetic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058974","descriptor_name":"Phylogeography","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058974","descriptor_name":"Phylogeography","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058974","descriptor_name":"Phylogeography","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058974","descriptor_name":"Phylogeography","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1371/journal.pcbi.1010422","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010422","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010422&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:35984849","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35984849","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:doaj.org/article:2f69cc28c3de49dbb11a508ae5b16398","is_oa":true,"landing_page_url":"https://doaj.org/article/2f69cc28c3de49dbb11a508ae5b16398","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 18, Iss 8, p e1010422 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9447913","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9447913","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1010422","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010422","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010422&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/10","display_name":"Reduced inequalities","score":0.6299999952316284}],"awards":[{"id":"https://openalex.org/G3072956370","display_name":null,"funder_award_id":"2019-67021-29932","funder_id":"https://openalex.org/F4320332299","funder_display_name":"National Institute of Food and Agriculture"},{"id":"https://openalex.org/G5620962805","display_name":null,"funder_award_id":"67021","funder_id":"https://openalex.org/F4320332299","funder_display_name":"National Institute of Food and Agriculture"}],"funders":[{"id":"https://openalex.org/F4320306114","display_name":"U.S. Department of Agriculture","ror":"https://ror.org/01na82s61"},{"id":"https://openalex.org/F4320332299","display_name":"National Institute of Food and Agriculture","ror":"https://ror.org/05qx3fv49"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4293069966.pdf","grobid_xml":"https://content.openalex.org/works/W4293069966.grobid-xml"},"referenced_works_count":75,"referenced_works":["https://openalex.org/W114397555","https://openalex.org/W627565722","https://openalex.org/W1430163993","https://openalex.org/W1503883746","https://openalex.org/W1708072900","https://openalex.org/W1995072061","https://openalex.org/W2008044410","https://openalex.org/W2009596137","https://openalex.org/W2020994501","https://openalex.org/W2027778251","https://openalex.org/W2044893541","https://openalex.org/W2046041989","https://openalex.org/W2049367875","https://openalex.org/W2055041101","https://openalex.org/W2060425093","https://openalex.org/W2072436302","https://openalex.org/W2081410257","https://openalex.org/W2082967637","https://openalex.org/W2083539954","https://openalex.org/W2084377486","https://openalex.org/W2086300240","https://openalex.org/W2088715433","https://openalex.org/W2095719183","https://openalex.org/W2100295596","https://openalex.org/W2101380850","https://openalex.org/W2108675597","https://openalex.org/W2114058116","https://openalex.org/W2122195587","https://openalex.org/W2125120726","https://openalex.org/W2127713506","https://openalex.org/W2130333286","https://openalex.org/W2136817755","https://openalex.org/W2137683719","https://openalex.org/W2137706757","https://openalex.org/W2146442942","https://openalex.org/W2147911093","https://openalex.org/W2150508312","https://openalex.org/W2153149273","https://openalex.org/W2154397560","https://openalex.org/W2170093840","https://openalex.org/W2170675663","https://openalex.org/W2181675264","https://openalex.org/W2230917720","https://openalex.org/W2472378828","https://openalex.org/W2519651118","https://openalex.org/W2758843577","https://openalex.org/W2767338586","https://openalex.org/W2777140368","https://openalex.org/W2799249604","https://openalex.org/W2897873206","https://openalex.org/W2950040478","https://openalex.org/W2950720234","https://openalex.org/W2951126701","https://openalex.org/W2951641704","https://openalex.org/W2952894864","https://openalex.org/W2970459958","https://openalex.org/W2971662497","https://openalex.org/W2972225545","https://openalex.org/W2987354835","https://openalex.org/W3001567967","https://openalex.org/W3010789078","https://openalex.org/W3033814025","https://openalex.org/W3038874609","https://openalex.org/W3043281642","https://openalex.org/W3047286145","https://openalex.org/W3066121912","https://openalex.org/W3092633776","https://openalex.org/W4200124146","https://openalex.org/W4205989338","https://openalex.org/W4212983021","https://openalex.org/W4213436894","https://openalex.org/W4220684081","https://openalex.org/W4220706048","https://openalex.org/W4247464444","https://openalex.org/W4307411246"],"related_works":["https://openalex.org/W2344626677","https://openalex.org/W3003087011","https://openalex.org/W3043671492","https://openalex.org/W3011411519","https://openalex.org/W2560579881","https://openalex.org/W2896260141","https://openalex.org/W2132372414","https://openalex.org/W2045530547","https://openalex.org/W4289119314","https://openalex.org/W3100998278"],"abstract_inverted_index":{"Movement":[0],"of":[1,33,49,57,67,98,117,162,176,188,212,225,239],"individuals":[2,35,118,178],"between":[3,11,27,43,100],"populations":[4,28],"or":[5],"demes":[6],"is":[7],"often":[8],"restricted,":[9],"especially":[10],"geographically":[12],"isolated":[13],"populations.":[14,44,101],"The":[15,165],"structured":[16,154],"coalescent":[17,155],"provides":[18],"an":[19,51,78,105],"elegant":[20],"theoretical":[21],"framework":[22],"for":[23],"describing":[24],"how":[25,172],"movement":[26,99,116],"shapes":[29],"the":[30,47,71,115,139,153,160,173,181,203,208,221,226,233,244],"genealogical":[31,68],"history":[32,175],"sampled":[34,163,177,231],"and":[36,42,94,185,199,210,241],"thereby":[37],"structures":[38],"genetic":[39,191],"variation":[40],"within":[41],"However,":[45],"in":[46,64,126],"presence":[48],"recombination":[50,158,197,240],"individual":[52],"may":[53,89,130],"inherit":[54],"different":[55,61,86,91,96,128],"regions":[56,88],"their":[58],"genome":[59,182],"from":[60,119,183],"parents,":[62],"resulting":[63],"a":[65,123],"mosaic":[66],"histories":[69,93,97],"across":[70,180,232,243],"genome,":[72],"which":[73,147],"can":[74],"be":[75],"represented":[76],"by":[77,156],"Ancestral":[79,143],"Recombination":[80,102,144],"Graph":[81],"(ARG).":[82],"In":[83],"this":[84],"case,":[85],"genomic":[87],"have":[90],"ancestral":[92],"so":[95],"therefore":[103],"poses":[104],"additional":[106,132],"challenge":[107],"to":[108,113,152,170,223,236],"phylogeographic":[109,213],"methods":[110],"that":[111,127],"aim":[112],"reconstruct":[114],"genealogies,":[120],"although":[121],"also":[122],"potential":[124,209],"benefit":[125],"loci":[129],"contain":[131],"information":[133],"about":[134],"movement.":[135],"Here,":[136],"we":[137,206],"introduce":[138],"Structured":[140],"Coalescent":[141],"with":[142],"(SCAR)":[145],"model,":[146,205],"builds":[148],"on":[149],"recent":[150],"approximations":[151],"incorporating":[157],"into":[159],"ancestry":[161],"individuals.":[164],"SCAR":[166,204,222],"model":[167],"allows":[168],"us":[169],"infer":[171],"migration":[174,200,242],"varies":[179],"ARGs,":[184],"improves":[186],"estimation":[187],"key":[189],"population":[190,195],"parameters":[192],"such":[193],"as":[194],"sizes,":[196],"rates":[198],"rates.":[201],"Using":[202],"explore":[207,237],"limitations":[211],"inference":[214],"using":[215],"full":[216],"ARGs.":[217],"We":[218],"then":[219],"apply":[220],"lineages":[224],"recombining":[227],"fungus":[228],"Aspergillus":[229],"flavus":[230],"United":[234],"States":[235],"patterns":[238],"genome.":[245]},"counts_by_year":[{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}