{"id":"https://openalex.org/W4312190224","doi":"https://doi.org/10.1371/journal.pcbi.1010408","title":"Metabolic reprogramming in Rheumatoid Arthritis Synovial Fibroblasts: A hybrid modeling approach","display_name":"Metabolic reprogramming in Rheumatoid Arthritis Synovial Fibroblasts: A hybrid modeling approach","publication_year":2022,"publication_date":"2022-12-12","ids":{"openalex":"https://openalex.org/W4312190224","doi":"https://doi.org/10.1371/journal.pcbi.1010408","pmid":"https://pubmed.ncbi.nlm.nih.gov/36508473"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1010408","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010408","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1371/journal.pcbi.1010408","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090135477","display_name":"Sahar Aghakhani","orcid":"https://orcid.org/0000-0002-6392-4687"},"institutions":[{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210126360","display_name":"Centre Inria de Saclay","ror":"https://ror.org/0315e5x55","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1326498283","https://openalex.org/I4210126360"]},{"id":"https://openalex.org/I4210128926","display_name":"Genopole (France)","ror":"https://ror.org/0380k9k47","country_code":"FR","type":"company","lineage":["https://openalex.org/I4210128926"]},{"id":"https://openalex.org/I88467170","display_name":"Universit\u00e9 d'\u00c9vry Val-d'Essonne","ror":"https://ror.org/00e96v939","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954","https://openalex.org/I88467170"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Sahar Aghakhani","raw_affiliation_strings":["GenHotel-Laboratoire Europ\u00e9en de Recherche pour la Polyarthrite Rhumato\u00efde, Univ. Evry, Univ. Paris-Saclay, Evry, France","Lifeware Group, Inria Saclay \u00cele-de-France, Palaiseau, France","GenHotel - Laboratoire de recherche europ\u00e9en pour la polyarthrite rhumato\u00efde (2 rue Gaston Cr\u00e9mieux, CP5727, 91057 EVRY-GENOPOLE cedex - France)","Lifeware - Computational systems biology and optimization (France)"],"raw_orcid":"https://orcid.org/0000-0002-6392-4687","affiliations":[{"raw_affiliation_string":"GenHotel-Laboratoire Europ\u00e9en de Recherche pour la Polyarthrite Rhumato\u00efde, Univ. Evry, Univ. Paris-Saclay, Evry, France","institution_ids":["https://openalex.org/I277688954","https://openalex.org/I88467170"]},{"raw_affiliation_string":"Lifeware Group, Inria Saclay \u00cele-de-France, Palaiseau, France","institution_ids":["https://openalex.org/I4210126360"]},{"raw_affiliation_string":"GenHotel - Laboratoire de recherche europ\u00e9en pour la polyarthrite rhumato\u00efde (2 rue Gaston Cr\u00e9mieux, CP5727, 91057 EVRY-GENOPOLE cedex - France)","institution_ids":["https://openalex.org/I4210128926"]},{"raw_affiliation_string":"Lifeware - Computational systems biology and optimization (France)","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003525513","display_name":"Sylvain Soliman","orcid":"https://orcid.org/0000-0001-5525-7418"},"institutions":[{"id":"https://openalex.org/I4210126360","display_name":"Centre Inria de Saclay","ror":"https://ror.org/0315e5x55","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1326498283","https://openalex.org/I4210126360"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Sylvain Soliman","raw_affiliation_strings":["Lifeware Group, Inria Saclay \u00cele-de-France, Palaiseau, France","Lifeware - Computational systems biology and optimization (France)"],"raw_orcid":"https://orcid.org/0000-0001-5525-7418","affiliations":[{"raw_affiliation_string":"Lifeware Group, Inria Saclay \u00cele-de-France, Palaiseau, France","institution_ids":["https://openalex.org/I4210126360"]},{"raw_affiliation_string":"Lifeware - Computational systems biology and optimization (France)","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5050740875","display_name":"Anna Niarakis","orcid":"https://orcid.org/0000-0002-9687-7426"},"institutions":[{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210126360","display_name":"Centre Inria de Saclay","ror":"https://ror.org/0315e5x55","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1326498283","https://openalex.org/I4210126360"]},{"id":"https://openalex.org/I4210128926","display_name":"Genopole (France)","ror":"https://ror.org/0380k9k47","country_code":"FR","type":"company","lineage":["https://openalex.org/I4210128926"]},{"id":"https://openalex.org/I88467170","display_name":"Universit\u00e9 d'\u00c9vry Val-d'Essonne","ror":"https://ror.org/00e96v939","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954","https://openalex.org/I88467170"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Anna Niarakis","raw_affiliation_strings":["GenHotel-Laboratoire Europ\u00e9en de Recherche pour la Polyarthrite Rhumato\u00efde, Univ. Evry, Univ. Paris-Saclay, Evry, France","Lifeware Group, Inria Saclay \u00cele-de-France, Palaiseau, France","Lifeware - Computational systems biology and optimization (France)","GenHotel - Laboratoire de recherche europ\u00e9en pour la polyarthrite rhumato\u00efde (2 rue Gaston Cr\u00e9mieux, CP5727, 91057 EVRY-GENOPOLE cedex - France)"],"raw_orcid":"https://orcid.org/0000-0002-9687-7426","affiliations":[{"raw_affiliation_string":"GenHotel-Laboratoire Europ\u00e9en de Recherche pour la Polyarthrite Rhumato\u00efde, Univ. Evry, Univ. Paris-Saclay, Evry, France","institution_ids":["https://openalex.org/I277688954","https://openalex.org/I88467170"]},{"raw_affiliation_string":"Lifeware Group, Inria Saclay \u00cele-de-France, Palaiseau, France","institution_ids":["https://openalex.org/I4210126360"]},{"raw_affiliation_string":"Lifeware - Computational systems biology and optimization (France)","institution_ids":[]},{"raw_affiliation_string":"GenHotel - Laboratoire de recherche europ\u00e9en pour la polyarthrite rhumato\u00efde (2 rue Gaston Cr\u00e9mieux, CP5727, 91057 EVRY-GENOPOLE cedex - France)","institution_ids":["https://openalex.org/I4210128926"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5050740875"],"corresponding_institution_ids":["https://openalex.org/I277688954","https://openalex.org/I4210126360","https://openalex.org/I4210128926","https://openalex.org/I88467170"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2490,"currency":"EUR","value_usd":2685},"fwci":3.1247,"has_fulltext":false,"cited_by_count":40,"citation_normalized_percentile":{"value":0.93042956,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"18","issue":"12","first_page":"e1010408","last_page":"e1010408"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11663","display_name":"Viral Infectious Diseases and Gene Expression in Insects","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11663","display_name":"Viral Infectious Diseases and Gene Expression in Insects","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9873999953269958,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13539","display_name":"thermodynamics and calorimetric analyses","score":0.9851999878883362,"subfield":{"id":"https://openalex.org/subfields/1606","display_name":"Physical and Theoretical Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rheumatoid-arthritis","display_name":"Rheumatoid arthritis","score":0.7837603092193604},{"id":"https://openalex.org/keywords/reprogramming","display_name":"Reprogramming","score":0.6975254416465759},{"id":"https://openalex.org/keywords/arthritis","display_name":"Arthritis","score":0.45006975531578064},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.43316197395324707},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.39041364192962646},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.37639570236206055},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.34937405586242676},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.2277265191078186},{"id":"https://openalex.org/keywords/cell","display_name":"Cell","score":0.17318779230117798},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12145712971687317}],"concepts":[{"id":"https://openalex.org/C2777575956","wikidata":"https://www.wikidata.org/wiki/Q187255","display_name":"Rheumatoid arthritis","level":2,"score":0.7837603092193604},{"id":"https://openalex.org/C77255625","wikidata":"https://www.wikidata.org/wiki/Q402093","display_name":"Reprogramming","level":3,"score":0.6975254416465759},{"id":"https://openalex.org/C2777077863","wikidata":"https://www.wikidata.org/wiki/Q170990","display_name":"Arthritis","level":2,"score":0.45006975531578064},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.43316197395324707},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.39041364192962646},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.37639570236206055},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.34937405586242676},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.2277265191078186},{"id":"https://openalex.org/C1491633281","wikidata":"https://www.wikidata.org/wiki/Q7868","display_name":"Cell","level":2,"score":0.17318779230117798},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12145712971687317}],"mesh":[{"descriptor_ui":"D001172","descriptor_name":"Arthritis, Rheumatoid","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":true},{"descriptor_ui":"D001172","descriptor_name":"Arthritis, Rheumatoid","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":true},{"descriptor_ui":"D001172","descriptor_name":"Arthritis, Rheumatoid","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":true},{"descriptor_ui":"D001172","descriptor_name":"Arthritis, Rheumatoid","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001172","descriptor_name":"Arthritis, Rheumatoid","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001172","descriptor_name":"Arthritis, Rheumatoid","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D002478","descriptor_name":"Cells, Cultured","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002478","descriptor_name":"Cells, Cultured","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002478","descriptor_name":"Cells, Cultured","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005347","descriptor_name":"Fibroblasts","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D005347","descriptor_name":"Fibroblasts","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D005347","descriptor_name":"Fibroblasts","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013583","descriptor_name":"Synovial Membrane","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D013583","descriptor_name":"Synovial Membrane","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D013583","descriptor_name":"Synovial Membrane","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D013583","descriptor_name":"Synovial Membrane","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D013583","descriptor_name":"Synovial Membrane","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D013583","descriptor_name":"Synovial Membrane","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1371/journal.pcbi.1010408","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010408","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:36508473","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36508473","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:HAL:hal-03880870v1","is_oa":true,"landing_page_url":"https://hal.inria.fr/hal-03880870","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 1553-734X","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:HAL:hal-03880870v2","is_oa":true,"landing_page_url":"https://inria.hal.science/hal-03880870","pdf_url":null,"source":{"id":"https://openalex.org/S4406922466","display_name":"SPIRE - Sciences Po Institutional REpository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, 2022, 18 (12), pp.e1010408. &#x27E8;10.1371/journal.pcbi.1010408&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:doaj.org/article:74f80b1bff9e41d58d15b7411a8cd683","is_oa":true,"landing_page_url":"https://doaj.org/article/74f80b1bff9e41d58d15b7411a8cd683","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 18, Iss 12, p e1010408 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9779668","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9779668","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1010408","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010408","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5799999833106995,"display_name":"Affordable and clean energy","id":"https://metadata.un.org/sdg/7"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320313934","display_name":"Institut national de recherche en informatique et en automatique (INRIA)","ror":"https://ror.org/02kvxyf05"},{"id":"https://openalex.org/F4320324191","display_name":"Genopole","ror":"https://ror.org/0380k9k47"},{"id":"https://openalex.org/F4320337115","display_name":"Ecoles doctorales, Universit\u00e9 Paris-Saclay","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":85,"referenced_works":["https://openalex.org/W1538894063","https://openalex.org/W1586814698","https://openalex.org/W1980810546","https://openalex.org/W1982120838","https://openalex.org/W1984683661","https://openalex.org/W1993162189","https://openalex.org/W1998716086","https://openalex.org/W2000233729","https://openalex.org/W2000468514","https://openalex.org/W2000982470","https://openalex.org/W2005246753","https://openalex.org/W2006595571","https://openalex.org/W2017575850","https://openalex.org/W2020561965","https://openalex.org/W2025416003","https://openalex.org/W2033581905","https://openalex.org/W2035036685","https://openalex.org/W2048465561","https://openalex.org/W2055605599","https://openalex.org/W2066379425","https://openalex.org/W2069157810","https://openalex.org/W2072053154","https://openalex.org/W2074543817","https://openalex.org/W2076357723","https://openalex.org/W2078355959","https://openalex.org/W2087913184","https://openalex.org/W2096025761","https://openalex.org/W2102322990","https://openalex.org/W2107844632","https://openalex.org/W2110324649","https://openalex.org/W2110555227","https://openalex.org/W2110826367","https://openalex.org/W2112066013","https://openalex.org/W2115421980","https://openalex.org/W2120857280","https://openalex.org/W2127442706","https://openalex.org/W2127927969","https://openalex.org/W2129325583","https://openalex.org/W2130690212","https://openalex.org/W2136626207","https://openalex.org/W2138460987","https://openalex.org/W2141063536","https://openalex.org/W2145522340","https://openalex.org/W2150602579","https://openalex.org/W2202347610","https://openalex.org/W2216418212","https://openalex.org/W2317266260","https://openalex.org/W2408987114","https://openalex.org/W2460126719","https://openalex.org/W2461624040","https://openalex.org/W2526695386","https://openalex.org/W2561675875","https://openalex.org/W2599275145","https://openalex.org/W2618183351","https://openalex.org/W2623605515","https://openalex.org/W2744545256","https://openalex.org/W2791033272","https://openalex.org/W2793216298","https://openalex.org/W2796191283","https://openalex.org/W2807211990","https://openalex.org/W2898555886","https://openalex.org/W2949726389","https://openalex.org/W2950427358","https://openalex.org/W2951753173","https://openalex.org/W2960795186","https://openalex.org/W2972593257","https://openalex.org/W2979732422","https://openalex.org/W3018124194","https://openalex.org/W3025361835","https://openalex.org/W3048150263","https://openalex.org/W3090947236","https://openalex.org/W3096396743","https://openalex.org/W3099614534","https://openalex.org/W3131778757","https://openalex.org/W3179903228","https://openalex.org/W3180369811","https://openalex.org/W3197136969","https://openalex.org/W3204030162","https://openalex.org/W4210968471","https://openalex.org/W4211054359","https://openalex.org/W4226334898","https://openalex.org/W4237142329","https://openalex.org/W4246780304","https://openalex.org/W4251142325","https://openalex.org/W4285013431"],"related_works":["https://openalex.org/W1631979401","https://openalex.org/W2395945797","https://openalex.org/W1497716427","https://openalex.org/W2129470469","https://openalex.org/W2368295610","https://openalex.org/W1543102035","https://openalex.org/W2946692299","https://openalex.org/W3014941007","https://openalex.org/W2183075003","https://openalex.org/W2990520546"],"abstract_inverted_index":{"Rheumatoid":[0],"Arthritis":[1],"(RA)":[2],"is":[3,36],"an":[4],"autoimmune":[5],"disease":[6],"characterized":[7],"by":[8,171],"a":[9,92,116,122],"highly":[10],"invasive":[11],"pannus":[12,21],"formation":[13],"consisting":[14],"mainly":[15],"of":[16,44,58,85,102,115,150,204,217],"Synovial":[17],"Fibroblasts":[18],"(RASFs).":[19],"This":[20,105],"leads":[22],"to":[23,98,196],"cartilage,":[24],"bone,":[25],"and":[26,48,72,78,173,207],"soft":[27],"tissue":[28],"destruction":[29],"in":[30,69,95,176,189],"the":[31,52,56,108,113,133,141,165,184,214],"affected":[32],"joint.":[33],"RASFs'":[34,67,151],"activation":[35],"associated":[37],"with":[38,121],"metabolic":[39,60,124,142,157,168,194],"alterations":[40],"resulting":[41],"from":[42],"dysregulation":[43],"extracellular":[45],"signals'":[46],"transduction":[47],"gene":[49,174],"regulation.":[50],"Deciphering":[51],"intricate":[53],"mechanisms":[54],"at":[55],"origin":[57],"this":[59],"reprogramming":[61,169,195],"may":[62,192],"provide":[63],"significant":[64],"insight":[65],"into":[66,198],"involvement":[68],"RA's":[70],"pathogenesis":[71],"offer":[73],"new":[74],"therapeutic":[75],"strategies.":[76],"Qualitative":[77],"quantitative":[79],"dynamic":[80],"modeling":[81,131],"can":[82],"address":[83],"some":[84],"these":[86],"features,":[87],"but":[88],"hybrid":[89,110,130,161],"models":[90],"represent":[91],"real":[93],"asset":[94],"their":[96,156],"ability":[97],"span":[99],"multiple":[100],"layers":[101],"biological":[103],"machinery.":[104],"work":[106],"presents":[107],"first":[109],"RASF":[111,162],"model:":[112],"combination":[114],"cell-specific":[117],"qualitative":[118],"regulatory":[119,134,152],"network":[120],"global":[123],"network.":[125,143],"The":[126,160],"automated":[127],"framework":[128],"for":[129,209],"exploits":[132],"network's":[135],"trap-spaces":[136],"as":[137],"additional":[138],"constraints":[139],"on":[140,155,183],"Subsequent":[144],"flux":[145,158],"balance":[146],"analysis":[147],"allows":[148],"assessment":[149],"outcomes'":[153],"impact":[154],"distribution.":[159],"model":[163],"reproduces":[164],"experimentally":[166],"observed":[167],"induced":[170],"signaling":[172],"regulation":[175],"RASFs.":[177],"Simulations":[178],"also":[179],"enable":[180],"further":[181],"hypotheses":[182],"potential":[185],"reverse":[186],"Warburg":[187],"effect":[188],"RA.":[190],"RASFs":[191],"undergo":[193],"turn":[197],"\"metabolic":[199],"factories\",":[200],"producing":[201],"high":[202],"levels":[203],"energy-rich":[205],"fuels":[206],"nutrients":[208],"neighboring":[210],"demanding":[211],"cells":[212],"through":[213],"crucial":[215],"role":[216],"HIF1.":[218]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":23},{"year":2022,"cited_by_count":1}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
