{"id":"https://openalex.org/W4287510214","doi":"https://doi.org/10.1371/journal.pcbi.1010310","title":"Graphia: A platform for the graph-based visualisation and analysis of high dimensional data","display_name":"Graphia: A platform for the graph-based visualisation and analysis of high dimensional data","publication_year":2022,"publication_date":"2022-07-25","ids":{"openalex":"https://openalex.org/W4287510214","doi":"https://doi.org/10.1371/journal.pcbi.1010310","pmid":"https://pubmed.ncbi.nlm.nih.gov/35877685"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1010310","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010310","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010310&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010310&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5047471475","display_name":"Tom C. Freeman","orcid":"https://orcid.org/0000-0001-5235-8483"},"institutions":[{"id":"https://openalex.org/I133960621","display_name":"Roslin Institute","ror":"https://ror.org/01920rj20","country_code":"GB","type":"facility","lineage":["https://openalex.org/I133960621","https://openalex.org/I2799693246","https://openalex.org/I4210087105","https://openalex.org/I98677209"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Tom C. Freeman","raw_affiliation_strings":["Kajeka Limited, Roslin Innovation Centre, Easter Bush Campus, The University of Edinburgh, Edinburgh, United Kingdom","The Roslin Institute, Easter Bush Campus, The University of Edinburgh, Edinburgh, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Kajeka Limited, Roslin Innovation Centre, Easter Bush Campus, The University of Edinburgh, Edinburgh, United Kingdom","institution_ids":["https://openalex.org/I98677209"]},{"raw_affiliation_string":"The Roslin Institute, Easter Bush Campus, The University of Edinburgh, Edinburgh, United Kingdom","institution_ids":["https://openalex.org/I133960621","https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077110556","display_name":"Sebastian Horsewell","orcid":"https://orcid.org/0000-0001-8420-4067"},"institutions":[{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Sebastian Horsewell","raw_affiliation_strings":["Kajeka Limited, Roslin Innovation Centre, Easter Bush Campus, The University of Edinburgh, Edinburgh, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Kajeka Limited, Roslin Innovation Centre, Easter Bush Campus, The University of Edinburgh, Edinburgh, United Kingdom","institution_ids":["https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028303574","display_name":"Anirudh Patir","orcid":"https://orcid.org/0000-0001-6980-0100"},"institutions":[{"id":"https://openalex.org/I133960621","display_name":"Roslin Institute","ror":"https://ror.org/01920rj20","country_code":"GB","type":"facility","lineage":["https://openalex.org/I133960621","https://openalex.org/I2799693246","https://openalex.org/I4210087105","https://openalex.org/I98677209"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Anirudh Patir","raw_affiliation_strings":["The Roslin Institute, Easter Bush Campus, The University of Edinburgh, Edinburgh, United Kingdom"],"affiliations":[{"raw_affiliation_string":"The Roslin Institute, Easter Bush Campus, The University of Edinburgh, Edinburgh, United Kingdom","institution_ids":["https://openalex.org/I133960621","https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071345619","display_name":"Joshua D. Harling-Lee","orcid":"https://orcid.org/0000-0003-1568-8250"},"institutions":[{"id":"https://openalex.org/I133960621","display_name":"Roslin Institute","ror":"https://ror.org/01920rj20","country_code":"GB","type":"facility","lineage":["https://openalex.org/I133960621","https://openalex.org/I2799693246","https://openalex.org/I4210087105","https://openalex.org/I98677209"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Josh Harling-Lee","raw_affiliation_strings":["The Roslin Institute, Easter Bush Campus, The University of Edinburgh, Edinburgh, United Kingdom"],"affiliations":[{"raw_affiliation_string":"The Roslin Institute, Easter Bush Campus, The University of Edinburgh, Edinburgh, United Kingdom","institution_ids":["https://openalex.org/I133960621","https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089370410","display_name":"Tim Regan","orcid":"https://orcid.org/0000-0002-0979-7875"},"institutions":[{"id":"https://openalex.org/I133960621","display_name":"Roslin Institute","ror":"https://ror.org/01920rj20","country_code":"GB","type":"facility","lineage":["https://openalex.org/I133960621","https://openalex.org/I2799693246","https://openalex.org/I4210087105","https://openalex.org/I98677209"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Tim Regan","raw_affiliation_strings":["The Roslin Institute, Easter Bush Campus, The University of Edinburgh, Edinburgh, United Kingdom"],"affiliations":[{"raw_affiliation_string":"The Roslin Institute, Easter Bush Campus, The University of Edinburgh, Edinburgh, United Kingdom","institution_ids":["https://openalex.org/I133960621","https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058395034","display_name":"Barbara Shih","orcid":"https://orcid.org/0000-0002-3676-3304"},"institutions":[{"id":"https://openalex.org/I133960621","display_name":"Roslin Institute","ror":"https://ror.org/01920rj20","country_code":"GB","type":"facility","lineage":["https://openalex.org/I133960621","https://openalex.org/I2799693246","https://openalex.org/I4210087105","https://openalex.org/I98677209"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Barbara B. Shih","raw_affiliation_strings":["The Roslin Institute, Easter Bush Campus, The University of Edinburgh, Edinburgh, United Kingdom"],"affiliations":[{"raw_affiliation_string":"The Roslin Institute, Easter Bush Campus, The University of Edinburgh, Edinburgh, United Kingdom","institution_ids":["https://openalex.org/I133960621","https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086435813","display_name":"James Prendergast","orcid":"https://orcid.org/0000-0001-8916-018X"},"institutions":[{"id":"https://openalex.org/I133960621","display_name":"Roslin Institute","ror":"https://ror.org/01920rj20","country_code":"GB","type":"facility","lineage":["https://openalex.org/I133960621","https://openalex.org/I2799693246","https://openalex.org/I4210087105","https://openalex.org/I98677209"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"James Prendergast","raw_affiliation_strings":["The Roslin Institute, Easter Bush Campus, The University of Edinburgh, Edinburgh, United Kingdom"],"affiliations":[{"raw_affiliation_string":"The Roslin Institute, Easter Bush Campus, The University of Edinburgh, Edinburgh, United Kingdom","institution_ids":["https://openalex.org/I133960621","https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086500057","display_name":"David Hume","orcid":"https://orcid.org/0000-0002-2615-1478"},"institutions":[{"id":"https://openalex.org/I1308309334","display_name":"Translational Research Institute","ror":"https://ror.org/00v807439","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1308309334"]},{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]},{"id":"https://openalex.org/I4210092543","display_name":"Mater Research","ror":"https://ror.org/00nx6aa03","country_code":"AU","type":"facility","lineage":["https://openalex.org/I4210092543"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"David A. Hume","raw_affiliation_strings":["Mater Research Institute-University of Queensland, Translational Research Institute, Woolloongabba, Queensland, Australia"],"affiliations":[{"raw_affiliation_string":"Mater Research Institute-University of Queensland, Translational Research Institute, Woolloongabba, Queensland, Australia","institution_ids":["https://openalex.org/I1308309334","https://openalex.org/I165143802","https://openalex.org/I4210092543"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060664077","display_name":"Tim Angus","orcid":"https://orcid.org/0000-0003-1736-9456"},"institutions":[{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Tim Angus","raw_affiliation_strings":["Kajeka Limited, Roslin Innovation Centre, Easter Bush Campus, The University of Edinburgh, Edinburgh, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Kajeka Limited, Roslin Innovation Centre, Easter Bush Campus, The University of Edinburgh, Edinburgh, United Kingdom","institution_ids":["https://openalex.org/I98677209"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5047471475"],"corresponding_institution_ids":["https://openalex.org/I133960621","https://openalex.org/I98677209"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":6.6831,"has_fulltext":true,"cited_by_count":91,"citation_normalized_percentile":{"value":0.97963811,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"18","issue":"7","first_page":"e1010310","last_page":"e1010310"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9884999990463257,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9685999751091003,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7393299341201782},{"id":"https://openalex.org/keywords/adjacency-matrix","display_name":"Adjacency matrix","score":0.7196938395500183},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6777525544166565},{"id":"https://openalex.org/keywords/plug-in","display_name":"Plug-in","score":0.6131297945976257},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5750169157981873},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.5465828776359558},{"id":"https://openalex.org/keywords/graph-drawing","display_name":"Graph drawing","score":0.5229164361953735},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4651886522769928},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.46171948313713074},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.43913233280181885},{"id":"https://openalex.org/keywords/graph-database","display_name":"Graph database","score":0.4256061911582947},{"id":"https://openalex.org/keywords/graph-theory","display_name":"Graph theory","score":0.42511245608329773},{"id":"https://openalex.org/keywords/graph-rewriting","display_name":"Graph rewriting","score":0.41878604888916016},{"id":"https://openalex.org/keywords/power-graph-analysis","display_name":"Power graph analysis","score":0.41567832231521606},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.21893543004989624},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.10682091116905212}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7393299341201782},{"id":"https://openalex.org/C180356752","wikidata":"https://www.wikidata.org/wiki/Q727035","display_name":"Adjacency matrix","level":3,"score":0.7196938395500183},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6777525544166565},{"id":"https://openalex.org/C4924752","wikidata":"https://www.wikidata.org/wiki/Q184148","display_name":"Plug-in","level":2,"score":0.6131297945976257},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5750169157981873},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.5465828776359558},{"id":"https://openalex.org/C112953755","wikidata":"https://www.wikidata.org/wiki/Q739462","display_name":"Graph drawing","level":3,"score":0.5229164361953735},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4651886522769928},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.46171948313713074},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.43913233280181885},{"id":"https://openalex.org/C176225458","wikidata":"https://www.wikidata.org/wiki/Q595971","display_name":"Graph database","level":3,"score":0.4256061911582947},{"id":"https://openalex.org/C88230418","wikidata":"https://www.wikidata.org/wiki/Q131476","display_name":"Graph theory","level":2,"score":0.42511245608329773},{"id":"https://openalex.org/C558772884","wikidata":"https://www.wikidata.org/wiki/Q1508564","display_name":"Graph rewriting","level":3,"score":0.41878604888916016},{"id":"https://openalex.org/C106937863","wikidata":"https://www.wikidata.org/wiki/Q7236518","display_name":"Power graph analysis","level":3,"score":0.41567832231521606},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.21893543004989624},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.10682091116905212},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":8,"locations":[{"id":"doi:10.1371/journal.pcbi.1010310","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010310","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010310&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:35877685","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35877685","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:RePEc:plo:pcbi00:1010310","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1010310","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:f533845cc82a42d0bf6e90d92806441d","is_oa":true,"landing_page_url":"https://doaj.org/article/f533845cc82a42d0bf6e90d92806441d","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 18, Iss 7, p e1010310 (2022)","raw_type":"article"},{"id":"pmh:oai:eprints.lancs.ac.uk:211726","is_oa":false,"landing_page_url":"https://eprints.lancs.ac.uk/id/eprint/211726/","pdf_url":null,"source":{"id":"https://openalex.org/S4306401916","display_name":"Lancaster EPrints (Lancaster University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67415387","host_organization_name":"Lancaster University","host_organization_lineage":["https://openalex.org/I67415387"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9352203","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9352203","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"},{"id":"pmh:oai:pure.ed.ac.uk:openaire/c48b6a84-ba62-4dd7-baae-0633b470af86","is_oa":true,"landing_page_url":"https://www.research.ed.ac.uk/en/publications/c48b6a84-ba62-4dd7-baae-0633b470af86","pdf_url":null,"source":{"id":"https://openalex.org/S4306400321","display_name":"Edinburgh Research Explorer (University of Edinburgh)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I98677209","host_organization_name":"University of Edinburgh","host_organization_lineage":["https://openalex.org/I98677209"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Freeman, T C, Horsewell, S, Patir, A, Harling-Lee, J, Regan, T, Shih, B B, Prendergast, J, Hume, D A & Angus, T 2022, 'Graphia : A platform for the graph-based visualisation and analysis of high dimensional data', PLoS Computational Biology, vol. 18, no. 7, e1010310. https://doi.org/10.1371/journal.pcbi.1010310","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pure.ed.ac.uk:publications/c48b6a84-ba62-4dd7-baae-0633b470af86","is_oa":true,"landing_page_url":"https://hdl.handle.net/20.500.11820/c48b6a84-ba62-4dd7-baae-0633b470af86","pdf_url":null,"source":{"id":"https://openalex.org/S4306400321","display_name":"Edinburgh Research Explorer (University of Edinburgh)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I98677209","host_organization_name":"University of Edinburgh","host_organization_lineage":["https://openalex.org/I98677209"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1010310","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010310","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010310&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4699999988079071,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G153372842","display_name":null,"funder_award_id":"BBS/E/D/10002071","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G5505064558","display_name":null,"funder_award_id":"SMART/14/034 / 14/9168","funder_id":"https://openalex.org/F4320316977","funder_display_name":"Scottish Enterprise"},{"id":"https://openalex.org/G7472412475","display_name":null,"funder_award_id":"Core funding","funder_id":"https://openalex.org/F4320337415","funder_display_name":"Janssen Research and Development"}],"funders":[{"id":"https://openalex.org/F4320316977","display_name":"Scottish Enterprise","ror":"https://ror.org/015yt6k87"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"},{"id":"https://openalex.org/F4320337415","display_name":"Janssen Research and Development","ror":"https://ror.org/03qd7mz70"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4287510214.pdf","grobid_xml":"https://content.openalex.org/works/W4287510214.grobid-xml"},"referenced_works_count":44,"referenced_works":["https://openalex.org/W634834491","https://openalex.org/W1871096589","https://openalex.org/W1966327575","https://openalex.org/W2009405916","https://openalex.org/W2031006817","https://openalex.org/W2088412871","https://openalex.org/W2096093282","https://openalex.org/W2096525273","https://openalex.org/W2104549677","https://openalex.org/W2111605665","https://openalex.org/W2116856566","https://openalex.org/W2123500593","https://openalex.org/W2124166542","https://openalex.org/W2124649441","https://openalex.org/W2125910575","https://openalex.org/W2130439971","https://openalex.org/W2137522673","https://openalex.org/W2153325555","https://openalex.org/W2159675211","https://openalex.org/W2162166699","https://openalex.org/W2187089797","https://openalex.org/W2469279958","https://openalex.org/W2479009306","https://openalex.org/W2594030753","https://openalex.org/W2767490506","https://openalex.org/W2883420974","https://openalex.org/W2889683763","https://openalex.org/W2892597528","https://openalex.org/W2894687190","https://openalex.org/W2899391746","https://openalex.org/W2901778940","https://openalex.org/W2902652978","https://openalex.org/W2951942625","https://openalex.org/W2961310917","https://openalex.org/W2970408178","https://openalex.org/W2979549191","https://openalex.org/W3009701588","https://openalex.org/W3012393121","https://openalex.org/W3040107810","https://openalex.org/W3045244624","https://openalex.org/W4230903726","https://openalex.org/W4241070296","https://openalex.org/W6675824659","https://openalex.org/W7052812575"],"related_works":["https://openalex.org/W1862343760","https://openalex.org/W2173996149","https://openalex.org/W4293657129","https://openalex.org/W2955986971","https://openalex.org/W4211081216","https://openalex.org/W1579593503","https://openalex.org/W2182728651","https://openalex.org/W91435914","https://openalex.org/W2783397217","https://openalex.org/W2413217151"],"abstract_inverted_index":{"Graphia":[0,135,150],"is":[1,36,56,158,166],"an":[2,76],"open-source":[3],"platform":[4],"created":[5],"for":[6,38,83,88,98,109],"the":[7,11,23,39,54,61,89,110,122,146,161],"graph-based":[8],"analysis":[9,147],"of":[10,14,25,41,48,79,91,112,124,134,143,163],"huge":[12],"amounts":[13],"quantitative":[15],"and":[16,30,86,93,101,165],"qualitative":[17],"data":[18,114,119],"currently":[19],"being":[20],"generated":[21],"from":[22,44,115,171],"study":[24],"genomes,":[26],"genes,":[27],"proteins":[28],"metabolites":[29],"cells.":[31],"Core":[32],"to":[33,58,138,169],"Graphia's":[34],"functionality":[35],"support":[37],"calculation":[40],"correlation":[42],"matrices":[43],"any":[45],"tabular":[46],"matrix":[47],"continuous":[49],"or":[50,70,118,127],"discrete":[51],"values,":[52],"whereupon":[53],"software":[55],"designed":[57],"rapidly":[59],"visualise":[60],"often":[62],"very":[63],"large":[64],"graphs":[65],"that":[66],"result":[67],"in":[68,121,145],"2D":[69],"3D":[71],"space.":[72],"Following":[73],"graph":[74,84,99],"construction,":[75],"extensive":[77],"range":[78,142],"measurement":[80],"algorithms,":[81],"routines":[82],"transformation,":[85],"options":[87],"visualisation":[90],"node":[92],"edge":[94],"attributes":[95],"are":[96,136],"available,":[97],"exploration":[100],"analysis.":[102],"Combined,":[103],"these":[104],"provide":[105],"a":[106,125],"powerful":[107],"solution":[108],"interpretation":[111],"high-dimensional":[113],"many":[116],"sources,":[117],"already":[120],"form":[123],"network":[126],"equivalent":[128],"adjacency":[129],"matrix.":[130],"Several":[131],"use":[132],"cases":[133],"described,":[137],"showcase":[139],"its":[140],"wide":[141],"applications":[144],"biological":[148],"data.":[149],"runs":[151],"on":[152],"all":[153],"major":[154],"desktop":[155],"operating":[156],"systems,":[157],"extensible":[159],"through":[160],"deployment":[162],"plugins":[164],"freely":[167],"available":[168],"download":[170],"https://graphia.app/.":[172]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":28},{"year":2024,"cited_by_count":21},{"year":2023,"cited_by_count":19},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
