{"id":"https://openalex.org/W4284973990","doi":"https://doi.org/10.1371/journal.pcbi.1010257","title":"Role of actin filaments and cis binding in cadherin clustering and patterning","display_name":"Role of actin filaments and cis binding in cadherin clustering and patterning","publication_year":2022,"publication_date":"2022-07-08","ids":{"openalex":"https://openalex.org/W4284973990","doi":"https://doi.org/10.1371/journal.pcbi.1010257","pmid":"https://pubmed.ncbi.nlm.nih.gov/35802763"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1010257","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010257","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010257&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010257&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5055678600","display_name":"Qilin Yu","orcid":"https://orcid.org/0000-0002-0120-6604"},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Qilin Yu","raw_affiliation_strings":["Department of Biomedical Engineering, University of Melbourne, Melbourne, Australia"],"raw_orcid":"https://orcid.org/0000-0002-0120-6604","affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, University of Melbourne, Melbourne, Australia","institution_ids":["https://openalex.org/I165779595"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100605440","display_name":"Taeyoon Kim","orcid":"https://orcid.org/0000-0002-5588-8532"},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Taeyoon Kim","raw_affiliation_strings":["Weldon School of Biomedical Engineering, Purdue University, West Lafayette, Indiana, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-5588-8532","affiliations":[{"raw_affiliation_string":"Weldon School of Biomedical Engineering, Purdue University, West Lafayette, Indiana, United States of America","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5051040354","display_name":"Vijay Rajagopal","orcid":"https://orcid.org/0000-0002-5509-402X"},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Vijay Rajagopal","raw_affiliation_strings":["Department of Biomedical Engineering, University of Melbourne, Melbourne, Australia"],"raw_orcid":"https://orcid.org/0000-0002-5509-402X","affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, University of Melbourne, Melbourne, Australia","institution_ids":["https://openalex.org/I165779595"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5051040354","https://openalex.org/A5100605440"],"corresponding_institution_ids":["https://openalex.org/I165779595","https://openalex.org/I219193219"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":0.5842,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.60476497,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"18","issue":"7","first_page":"e1010257","last_page":"e1010257"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10379","display_name":"Cellular Mechanics and Interactions","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10379","display_name":"Cellular Mechanics and Interactions","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10929","display_name":"Wnt/\u03b2-catenin signaling in development and cancer","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11650","display_name":"Skin and Cellular Biology Research","score":0.9747999906539917,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cadherin","display_name":"Cadherin","score":0.8699665069580078},{"id":"https://openalex.org/keywords/actin-cytoskeleton","display_name":"Actin cytoskeleton","score":0.6861838102340698},{"id":"https://openalex.org/keywords/actin","display_name":"Actin","score":0.6576516032218933},{"id":"https://openalex.org/keywords/actin-remodeling","display_name":"Actin remodeling","score":0.5563790798187256},{"id":"https://openalex.org/keywords/cytoskeleton","display_name":"Cytoskeleton","score":0.5416155457496643},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.5317175388336182},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.45719754695892334},{"id":"https://openalex.org/keywords/biophysics","display_name":"Biophysics","score":0.45245134830474854},{"id":"https://openalex.org/keywords/actin-binding-protein","display_name":"Actin-binding protein","score":0.45167818665504456},{"id":"https://openalex.org/keywords/cell","display_name":"Cell","score":0.15852731466293335},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.14788392186164856}],"concepts":[{"id":"https://openalex.org/C149402561","wikidata":"https://www.wikidata.org/wiki/Q24776048","display_name":"Cadherin","level":3,"score":0.8699665069580078},{"id":"https://openalex.org/C2993400109","wikidata":"https://www.wikidata.org/wiki/Q329638","display_name":"Actin cytoskeleton","level":4,"score":0.6861838102340698},{"id":"https://openalex.org/C125705527","wikidata":"https://www.wikidata.org/wiki/Q185269","display_name":"Actin","level":2,"score":0.6576516032218933},{"id":"https://openalex.org/C3620293","wikidata":"https://www.wikidata.org/wiki/Q14908027","display_name":"Actin remodeling","level":5,"score":0.5563790798187256},{"id":"https://openalex.org/C142669718","wikidata":"https://www.wikidata.org/wiki/Q154626","display_name":"Cytoskeleton","level":3,"score":0.5416155457496643},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.5317175388336182},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.45719754695892334},{"id":"https://openalex.org/C12554922","wikidata":"https://www.wikidata.org/wiki/Q7100","display_name":"Biophysics","level":1,"score":0.45245134830474854},{"id":"https://openalex.org/C130861313","wikidata":"https://www.wikidata.org/wiki/Q3775363","display_name":"Actin-binding protein","level":5,"score":0.45167818665504456},{"id":"https://openalex.org/C1491633281","wikidata":"https://www.wikidata.org/wiki/Q7868","display_name":"Cell","level":2,"score":0.15852731466293335},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.14788392186164856}],"mesh":[{"descriptor_ui":"D000199","descriptor_name":"Actins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D000199","descriptor_name":"Actins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D000199","descriptor_name":"Actins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D002448","descriptor_name":"Cell Adhesion","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D002448","descriptor_name":"Cell Adhesion","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D002448","descriptor_name":"Cell Adhesion","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D002462","descriptor_name":"Cell Membrane","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002462","descriptor_name":"Cell Membrane","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002462","descriptor_name":"Cell Membrane","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008841","descriptor_name":"Actin Cytoskeleton","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008841","descriptor_name":"Actin Cytoskeleton","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008841","descriptor_name":"Actin Cytoskeleton","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015820","descriptor_name":"Cadherins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D015820","descriptor_name":"Cadherins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D015820","descriptor_name":"Cadherins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1371/journal.pcbi.1010257","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010257","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010257&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:35802763","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35802763","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:doaj.org/article:e3e35065ccbc4ced9f36461848688b75","is_oa":true,"landing_page_url":"https://doaj.org/article/e3e35065ccbc4ced9f36461848688b75","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 18, Iss 7, p e1010257 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9299298","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9299298","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1010257","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010257","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010257&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4560267733","display_name":null,"funder_award_id":"1R01GM126256","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320320974","display_name":"University of Melbourne","ror":"https://ror.org/01ej9dk98"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4284973990.pdf","grobid_xml":"https://content.openalex.org/works/W4284973990.grobid-xml"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W1494453148","https://openalex.org/W1968196398","https://openalex.org/W1981184799","https://openalex.org/W1998553096","https://openalex.org/W2001869472","https://openalex.org/W2009688266","https://openalex.org/W2010745787","https://openalex.org/W2015223335","https://openalex.org/W2021246320","https://openalex.org/W2021916807","https://openalex.org/W2033235634","https://openalex.org/W2044540369","https://openalex.org/W2050612706","https://openalex.org/W2055106914","https://openalex.org/W2081873450","https://openalex.org/W2089124011","https://openalex.org/W2093600176","https://openalex.org/W2095397788","https://openalex.org/W2098764065","https://openalex.org/W2101658540","https://openalex.org/W2120446093","https://openalex.org/W2138687527","https://openalex.org/W2140908580","https://openalex.org/W2141834663","https://openalex.org/W2145069321","https://openalex.org/W2152802507","https://openalex.org/W2163423429","https://openalex.org/W2166144417","https://openalex.org/W2169122887","https://openalex.org/W2336839321","https://openalex.org/W2528124245","https://openalex.org/W2563098669","https://openalex.org/W2749092846","https://openalex.org/W2792341287","https://openalex.org/W2800441963","https://openalex.org/W2800679771","https://openalex.org/W2897895525","https://openalex.org/W3008414954","https://openalex.org/W3081518224","https://openalex.org/W3208565538","https://openalex.org/W4205614716","https://openalex.org/W4207074572"],"related_works":["https://openalex.org/W1502937706","https://openalex.org/W2508393743","https://openalex.org/W3022680007","https://openalex.org/W2065899592","https://openalex.org/W4286855040","https://openalex.org/W1999579439","https://openalex.org/W2094297572","https://openalex.org/W2011544204","https://openalex.org/W2167877315","https://openalex.org/W2433285152"],"abstract_inverted_index":{"Cadherins":[0],"build":[1],"up":[2],"clusters":[3],"to":[4,178],"maintain":[5],"intercellular":[6],"contact":[7],"through":[8,22],"trans":[9,148],"and":[10,18,31,47,72,115,135,149,169,180],"cis":[11,89,150,170],"(lateral)":[12],"bindings.":[13],"Meanwhile,":[14],"interactions":[15,50,151],"between":[16,92,166],"cadherin":[17,27,33,46,52,70,93,104,125,140,155,175,182],"the":[19,76,80,113],"actin":[20,48,77,108,118],"cytoskeleton":[21,49],"cadherin/F-actin":[23],"linkers":[24],"can":[25,95,146],"affect":[26],"dynamics":[28,71],"by":[29,107,130],"corralling":[30,109],"tethering":[32],"molecules":[34,94],"locally.":[35],"Despite":[36],"many":[37],"experimental":[38],"studies,":[39],"a":[40,65,164,173],"quantitative,":[41],"mechanistic":[42],"understanding":[43],"of":[44,69,117],"how":[45],"regulate":[51],"clustering":[53,126],"does":[54],"not":[55],"exist.":[56],"To":[57],"address":[58],"this":[59],"gap":[60],"in":[61,122,124,132],"knowledge,":[62],"we":[63],"developed":[64],"coarse-grained":[66],"computational":[67],"model":[68],"their":[73],"interaction":[74],"with":[75,159],"cortex":[78],"underlying":[79],"cell":[81],"membrane.":[82],"Our":[83],"simulation":[84],"predictions":[85],"suggest":[86],"that":[87,103],"weak":[88,160],"binding":[90,145,162,168,171],"affinity":[91],"facilitate":[96],"large":[97],"cluster":[98,133],"formation.":[99],"We":[100],"also":[101],"found":[102],"movement":[105],"inhibition":[106],"is":[110],"dependent":[111],"on":[112],"concentration":[114],"length":[116],"filaments.":[119],"This":[120],"results":[121],"changes":[123],"behaviors,":[127],"as":[128,137,139,152,154],"reflected":[129],"differences":[131],"size":[134],"distribution":[136],"well":[138,153],"monomer":[141],"trajectory.":[142],"Strong":[143],"cadherin/actin":[144,161],"enhance":[147],"clustering.":[156],"By":[157],"contrast,":[158],"affinity,":[163],"competition":[165],"cadherin-actin":[167],"for":[172],"limited":[174],"pool":[176],"leads":[177],"temporary":[179],"unstable":[181],"clusters.":[183]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
