{"id":"https://openalex.org/W4283828568","doi":"https://doi.org/10.1371/journal.pcbi.1010211","title":"nAdder: A scale-space approach for the 3D analysis of neuronal traces","display_name":"nAdder: A scale-space approach for the 3D analysis of neuronal traces","publication_year":2022,"publication_date":"2022-07-05","ids":{"openalex":"https://openalex.org/W4283828568","doi":"https://doi.org/10.1371/journal.pcbi.1010211"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1010211","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010211","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1371/journal.pcbi.1010211","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5040928183","display_name":"Minh-Son Phan","orcid":"https://orcid.org/0000-0002-9916-1351"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I142476485","display_name":"\u00c9cole Polytechnique","ror":"https://ror.org/05hy3tk52","country_code":"FR","type":"education","lineage":["https://openalex.org/I142476485","https://openalex.org/I4210145102"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I157536573"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4210101332","display_name":"Group Image (Poland)","ror":"https://ror.org/01fba6t94","country_code":"PL","type":"company","lineage":["https://openalex.org/I4210101332"]}],"countries":["FR","PL"],"is_corresponding":false,"raw_author_name":"Minh Son Phan","raw_affiliation_strings":["Institut Pasteur, Universit\u00e9 de Paris Cit\u00e9, Image Analysis Hub,Paris, France","Laboratory for Optics and Biosciences, CNRS, INSERM, Ecole Polytechnique, IP Paris, Palaiseau, France","Laboratoire d'Optique et Biosciences","Hub d'analyse d'images - Image Analysis Hub (Platform)"],"affiliations":[{"raw_affiliation_string":"Institut Pasteur, Universit\u00e9 de Paris Cit\u00e9, Image Analysis Hub,Paris, France","institution_ids":["https://openalex.org/I204730241","https://openalex.org/I157536573"]},{"raw_affiliation_string":"Laboratory for Optics and Biosciences, CNRS, INSERM, Ecole Polytechnique, IP Paris, Palaiseau, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I142476485","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Laboratoire d'Optique et Biosciences","institution_ids":[]},{"raw_affiliation_string":"Hub d'analyse d'images - Image Analysis Hub (Platform)","institution_ids":["https://openalex.org/I4210101332"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062676612","display_name":"Katherine S. Matho","orcid":"https://orcid.org/0000-0002-6105-4219"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1340951533","display_name":"Institut de la Vision","ror":"https://ror.org/000zhpw23","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1340951533","https://openalex.org/I39804081"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I2750212522","display_name":"Cold Spring Harbor Laboratory","ror":"https://ror.org/02qz8b764","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2750212522"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]}],"countries":["FR","US"],"is_corresponding":false,"raw_author_name":"Katherine Matho","raw_affiliation_strings":["Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, United States of America","Sorbonne Universit\u00e9, INSERM, CNRS, Institut de la Vision, Paris, France","Institut de la Vision","Cold Spring Harbor Laboratory"],"affiliations":[{"raw_affiliation_string":"Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, United States of America","institution_ids":["https://openalex.org/I2750212522"]},{"raw_affiliation_string":"Sorbonne Universit\u00e9, INSERM, CNRS, Institut de la Vision, Paris, France","institution_ids":["https://openalex.org/I1340951533","https://openalex.org/I154526488","https://openalex.org/I39804081","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Institut de la Vision","institution_ids":["https://openalex.org/I1340951533"]},{"raw_affiliation_string":"Cold Spring Harbor Laboratory","institution_ids":["https://openalex.org/I2750212522"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029886936","display_name":"Emmanuel Beaurepaire","orcid":"https://orcid.org/0000-0002-2082-8214"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I142476485","display_name":"\u00c9cole Polytechnique","ror":"https://ror.org/05hy3tk52","country_code":"FR","type":"education","lineage":["https://openalex.org/I142476485","https://openalex.org/I4210145102"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Emmanuel Beaurepaire","raw_affiliation_strings":["Laboratory for Optics and Biosciences, CNRS, INSERM, Ecole Polytechnique, IP Paris, Palaiseau, France","Laboratoire d'Optique et Biosciences"],"affiliations":[{"raw_affiliation_string":"Laboratory for Optics and Biosciences, CNRS, INSERM, Ecole Polytechnique, IP Paris, Palaiseau, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I142476485","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Laboratoire d'Optique et Biosciences","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014215458","display_name":"Jean Livet","orcid":"https://orcid.org/0000-0003-3079-4908"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1340951533","display_name":"Institut de la Vision","ror":"https://ror.org/000zhpw23","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1340951533","https://openalex.org/I39804081"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Jean Livet","raw_affiliation_strings":["Sorbonne Universit\u00e9, INSERM, CNRS, Institut de la Vision, Paris, France","Institut de la Vision"],"affiliations":[{"raw_affiliation_string":"Sorbonne Universit\u00e9, INSERM, CNRS, Institut de la Vision, Paris, France","institution_ids":["https://openalex.org/I1340951533","https://openalex.org/I154526488","https://openalex.org/I39804081","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Institut de la Vision","institution_ids":["https://openalex.org/I1340951533"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023449502","display_name":"Anatole Chessel","orcid":"https://orcid.org/0000-0002-1326-6305"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I142476485","display_name":"\u00c9cole Polytechnique","ror":"https://ror.org/05hy3tk52","country_code":"FR","type":"education","lineage":["https://openalex.org/I142476485","https://openalex.org/I4210145102"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Anatole Chessel","raw_affiliation_strings":["Laboratory for Optics and Biosciences, CNRS, INSERM, Ecole Polytechnique, IP Paris, Palaiseau, France","Laboratoire d'Optique et Biosciences"],"affiliations":[{"raw_affiliation_string":"Laboratory for Optics and Biosciences, CNRS, INSERM, Ecole Polytechnique, IP Paris, Palaiseau, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I142476485","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Laboratoire d'Optique et Biosciences","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5023449502"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I142476485","https://openalex.org/I154526488"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2448,"currency":"EUR","value_usd":2640},"fwci":0.2642,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.74248085,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":"18","issue":"7","first_page":"e1010211","last_page":"e1010211"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10379","display_name":"Cellular Mechanics and Interactions","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.766933798789978},{"id":"https://openalex.org/keywords/tracing","display_name":"Tracing","score":0.6169224977493286},{"id":"https://openalex.org/keywords/metric","display_name":"Metric (unit)","score":0.6036703586578369},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5741884112358093},{"id":"https://openalex.org/keywords/connectomics","display_name":"Connectomics","score":0.5578231811523438},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.5479171872138977},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.47980716824531555},{"id":"https://openalex.org/keywords/metric-space","display_name":"Metric space","score":0.4254574477672577},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4097119867801666},{"id":"https://openalex.org/keywords/geometry","display_name":"Geometry","score":0.3606893718242645},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2981502413749695},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.2756170630455017},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.20449620485305786},{"id":"https://openalex.org/keywords/connectome","display_name":"Connectome","score":0.13762059807777405},{"id":"https://openalex.org/keywords/functional-connectivity","display_name":"Functional connectivity","score":0.09329631924629211},{"id":"https://openalex.org/keywords/mathematical-analysis","display_name":"Mathematical analysis","score":0.08922615647315979}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.766933798789978},{"id":"https://openalex.org/C138673069","wikidata":"https://www.wikidata.org/wiki/Q322229","display_name":"Tracing","level":2,"score":0.6169224977493286},{"id":"https://openalex.org/C176217482","wikidata":"https://www.wikidata.org/wiki/Q860554","display_name":"Metric (unit)","level":2,"score":0.6036703586578369},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5741884112358093},{"id":"https://openalex.org/C2779097318","wikidata":"https://www.wikidata.org/wiki/Q2993446","display_name":"Connectomics","level":4,"score":0.5578231811523438},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.5479171872138977},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.47980716824531555},{"id":"https://openalex.org/C198043062","wikidata":"https://www.wikidata.org/wiki/Q180953","display_name":"Metric space","level":2,"score":0.4254574477672577},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4097119867801666},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.3606893718242645},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2981502413749695},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.2756170630455017},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.20449620485305786},{"id":"https://openalex.org/C45715564","wikidata":"https://www.wikidata.org/wiki/Q1292103","display_name":"Connectome","level":3,"score":0.13762059807777405},{"id":"https://openalex.org/C3018011982","wikidata":"https://www.wikidata.org/wiki/Q7316120","display_name":"Functional connectivity","level":2,"score":0.09329631924629211},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.08922615647315979},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[],"locations_count":7,"locations":[{"id":"doi:10.1371/journal.pcbi.1010211","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010211","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmh:oai:repository.cshl.edu:40677","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402288","display_name":"Cold Spring Harbor Laboratory Institutional Repository (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"PeerReviewed"},{"id":"pmh:oai:HAL:hal-03874685v1","is_oa":true,"landing_page_url":"https://hal.archives-ouvertes.fr/hal-03874685","pdf_url":null,"source":{"id":"https://openalex.org/S4406922276","display_name":"INRIA a CCSD electronic archive server","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 1553-734X","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:HAL:hal-03874685v2","is_oa":true,"landing_page_url":"https://hal.science/hal-03874685","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, 2022, 18 (7), pp.e1010211. &#x27E8;10.1371/journal.pcbi.1010211&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:RePEc:plo:pcbi00:1010211","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1010211","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:f181f19580924182a895bcdc0279c0a6","is_oa":true,"landing_page_url":"https://doaj.org/article/f181f19580924182a895bcdc0279c0a6","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 18, Iss 7, p e1010211 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9286273","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9286273","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1010211","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010211","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1104483970","display_name":null,"funder_award_id":"ANR-10-LABX-6","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G1609927754","display_name":null,"funder_award_id":"ANR-11-EQPX-0029","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G1916321118","display_name":null,"funder_award_id":"ANR-10-INBS-0","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G1960712518","display_name":null,"funder_award_id":"ANR-10-INBS-04","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G1975008912","display_name":null,"funder_award_id":"ANR-11-EQPX-0029 Morphoscope2","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G2544745326","display_name":null,"funder_award_id":"11-EQPX-0029","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G4395821386","display_name":null,"funder_award_id":"ANR-10-INBS-04 France BioImaging","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G5190954876","display_name":null,"funder_award_id":"(ANR-10-LABX-65)","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G5341702794","display_name":null,"funder_award_id":"11-EQPX-00","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G5517792923","display_name":null,"funder_award_id":"ANR-10-LABX-65","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G5549440890","display_name":null,"funder_award_id":"ANR-10-LAB","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G5551520971","display_name":null,"funder_award_id":"10-LABX-65","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G5741144155","display_name":null,"funder_award_id":"11-EQPX-0029 Morphoscope2","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G6876561401","display_name":null,"funder_award_id":"ANR-18","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G7068340013","display_name":null,"funder_award_id":"951330 HOPE","funder_id":"https://openalex.org/F4320338335","funder_display_name":"H2020 European Research Council"},{"id":"https://openalex.org/G7240651115","display_name":null,"funder_award_id":"ANR-10","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G819187918","display_name":null,"funder_award_id":"ANR-18-IAHU-01","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320338335","display_name":"H2020 European Research Council","ror":"https://ror.org/0472cxd90"},{"id":"https://openalex.org/F4320338463","display_name":"CHIST-ERA","ror":"https://ror.org/00rbzpz17"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":64,"referenced_works":["https://openalex.org/W1498500832","https://openalex.org/W1513082520","https://openalex.org/W1553761880","https://openalex.org/W1556429568","https://openalex.org/W1904307646","https://openalex.org/W1964413276","https://openalex.org/W1965210407","https://openalex.org/W1993284672","https://openalex.org/W2017478274","https://openalex.org/W2017957151","https://openalex.org/W2025339136","https://openalex.org/W2031091629","https://openalex.org/W2049578043","https://openalex.org/W2055544911","https://openalex.org/W2061186544","https://openalex.org/W2062450961","https://openalex.org/W2068988203","https://openalex.org/W2084970566","https://openalex.org/W2086550814","https://openalex.org/W2097924771","https://openalex.org/W2097933570","https://openalex.org/W2105752466","https://openalex.org/W2117612778","https://openalex.org/W2121289914","https://openalex.org/W2139421798","https://openalex.org/W2148529294","https://openalex.org/W2261263381","https://openalex.org/W2274131568","https://openalex.org/W2335041440","https://openalex.org/W2488414426","https://openalex.org/W2615256066","https://openalex.org/W2734985667","https://openalex.org/W2760861884","https://openalex.org/W2774863785","https://openalex.org/W2802169546","https://openalex.org/W2810250526","https://openalex.org/W2890517390","https://openalex.org/W2895353742","https://openalex.org/W2903771707","https://openalex.org/W2904436729","https://openalex.org/W2911295867","https://openalex.org/W2922448580","https://openalex.org/W2925806435","https://openalex.org/W2937715612","https://openalex.org/W2947841579","https://openalex.org/W2951641862","https://openalex.org/W2966035017","https://openalex.org/W2971899185","https://openalex.org/W2982268628","https://openalex.org/W3015689959","https://openalex.org/W3016007634","https://openalex.org/W3043072563","https://openalex.org/W3086094719","https://openalex.org/W3091673646","https://openalex.org/W3110380072","https://openalex.org/W3148916402","https://openalex.org/W3170914969","https://openalex.org/W3171075118","https://openalex.org/W3194521325","https://openalex.org/W3202115170","https://openalex.org/W3202762561","https://openalex.org/W4249737388","https://openalex.org/W6741110370","https://openalex.org/W7055686756"],"related_works":["https://openalex.org/W2807503652","https://openalex.org/W2212379672","https://openalex.org/W2424680827","https://openalex.org/W2079675757","https://openalex.org/W2912524409","https://openalex.org/W2532575085","https://openalex.org/W4287673583","https://openalex.org/W3083399682","https://openalex.org/W3093145634","https://openalex.org/W4297851895"],"abstract_inverted_index":{"Tridimensional":[0],"microscopy":[1],"and":[2,7,93,101,128,131,140,170,175],"algorithms":[3],"for":[4,62],"automated":[5],"segmentation":[6],"tracing":[8],"are":[9,24],"revolutionizing":[10],"neuroscience":[11],"through":[12,108],"the":[13,36,68,94,97,104,109,185],"generation":[14],"of":[15,18,39,65,103,126,160,173,188],"growing":[16],"libraries":[17],"neuron":[19],"reconstructions.":[20],"Innovative":[21],"computational":[22],"methods":[23],"needed":[25],"to":[26,34,78,156,166,178],"analyze":[27],"these":[28],"neuronal":[29],"traces.":[30,142],"In":[31],"particular,":[32],"means":[33,125],"characterize":[35,157],"geometric":[37],"properties":[38],"traced":[40],"neurites":[41],"along":[42],"their":[43,179],"trajectory":[44],"have":[45],"been":[46],"lacking.":[47],"Here,":[48],"we":[49,152],"propose":[50],"a":[51,66,82,145,167],"local":[52,98,190],"tridimensional":[53],"(3D)":[54],"scale":[55],"metric":[56,91,137],"derived":[57],"from":[58],"differential":[59],"geometry,":[60],"measuring":[61],"each":[63],"point":[64],"curve":[67,105],"characteristic":[69],"length":[70],"where":[71],"it":[72],"is":[73,92],"fully":[74],"3D":[75,99],"as":[76],"opposed":[77],"being":[79],"embedded":[80],"in":[81],"2D":[83],"plane":[84],"or":[85],"1D":[86],"line.":[87],"The":[88],"larger":[89],"this":[90,119,136],"more":[95],"complex":[96],"loops":[100],"turns":[102],"are.":[106],"Available":[107],"GeNePy3D":[110],"open-source":[111],"Python":[112],"quantitative":[113],"geometry":[114],"library":[115],"(":[116],"https://genepy3d.gitlab.io":[117],"),":[118],"approach":[120],"termed":[121],"nAdder":[122],"offers":[123],"new":[124,182],"describing":[127],"comparing":[129],"axonal":[130],"dendritic":[132],"arbors.":[133],"We":[134],"validate":[135],"on":[138,184],"simulated":[139],"real":[141],"By":[143],"reanalysing":[144],"published":[146],"zebrafish":[147],"larva":[148],"whole":[149],"brain":[150],"dataset,":[151],"show":[153],"its":[154],"ability":[155],"different":[158],"population":[159],"commissural":[161],"axons,":[162],"distinguish":[163],"afferent":[164],"connections":[165],"target":[168],"region":[169],"differentiate":[171],"portions":[172],"axons":[174],"dendrites":[176],"according":[177],"behavior,":[180],"shedding":[181],"light":[183],"stereotypical":[186],"nature":[187],"neurites\u2019":[189],"geometry.":[191]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
