{"id":"https://openalex.org/W4229458626","doi":"https://doi.org/10.1371/journal.pcbi.1010125","title":"Superinfection exclusion: A viral strategy with short-term benefits and long-term drawbacks","display_name":"Superinfection exclusion: A viral strategy with short-term benefits and long-term drawbacks","publication_year":2022,"publication_date":"2022-05-10","ids":{"openalex":"https://openalex.org/W4229458626","doi":"https://doi.org/10.1371/journal.pcbi.1010125","pmid":"https://pubmed.ncbi.nlm.nih.gov/35536864"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1010125","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010125","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1371/journal.pcbi.1010125","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101679474","display_name":"Michael Hunter","orcid":"https://orcid.org/0000-0001-5439-2896"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Michael Hunter","raw_affiliation_strings":["Cavendish Laboratory, University of Cambridge, Cambridge, United Kingdom"],"raw_orcid":"https://orcid.org/0000-0001-5439-2896","affiliations":[{"raw_affiliation_string":"Cavendish Laboratory, University of Cambridge, Cambridge, United Kingdom","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5063818318","display_name":"Diana Fusco","orcid":"https://orcid.org/0000-0002-1505-7160"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Diana Fusco","raw_affiliation_strings":["Cavendish Laboratory, University of Cambridge, Cambridge, United Kingdom"],"raw_orcid":"https://orcid.org/0000-0002-1505-7160","affiliations":[{"raw_affiliation_string":"Cavendish Laboratory, University of Cambridge, Cambridge, United Kingdom","institution_ids":["https://openalex.org/I241749"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5063818318","https://openalex.org/A5101679474"],"corresponding_institution_ids":["https://openalex.org/I241749"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":10.8951,"has_fulltext":false,"cited_by_count":62,"citation_normalized_percentile":{"value":0.98777263,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"18","issue":"5","first_page":"e1010125","last_page":"e1010125"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10482","display_name":"Mathematical and Theoretical Epidemiology and Ecology Models","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10494","display_name":"Plant Virus Research Studies","score":0.986299991607666,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/superinfection","display_name":"Superinfection","score":0.9800686836242676},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7883681654930115},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.6297692656517029},{"id":"https://openalex.org/keywords/viral-evolution","display_name":"Viral evolution","score":0.5929407477378845},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.481486439704895},{"id":"https://openalex.org/keywords/viral-replication","display_name":"Viral replication","score":0.4150620698928833},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.36061835289001465},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3302079141139984},{"id":"https://openalex.org/keywords/virus","display_name":"Virus","score":0.2928614616394043},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.14080846309661865},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.13028204441070557}],"concepts":[{"id":"https://openalex.org/C2779617845","wikidata":"https://www.wikidata.org/wiki/Q1563808","display_name":"Superinfection","level":3,"score":0.9800686836242676},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7883681654930115},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.6297692656517029},{"id":"https://openalex.org/C8769409","wikidata":"https://www.wikidata.org/wiki/Q2066554","display_name":"Viral evolution","level":4,"score":0.5929407477378845},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.481486439704895},{"id":"https://openalex.org/C140704245","wikidata":"https://www.wikidata.org/wiki/Q3933202","display_name":"Viral replication","level":3,"score":0.4150620698928833},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.36061835289001465},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3302079141139984},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.2928614616394043},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.14080846309661865},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13028204441070557},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015163","descriptor_name":"Superinfection","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015163","descriptor_name":"Superinfection","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015163","descriptor_name":"Superinfection","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015163","descriptor_name":"Superinfection","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1371/journal.pcbi.1010125","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010125","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:35536864","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35536864","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:doaj.org/article:637a13ae50ad430f86dfbd89979e4f2e","is_oa":true,"landing_page_url":"https://doaj.org/article/637a13ae50ad430f86dfbd89979e4f2e","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 18, Iss 5, p e1010125 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9122224","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9122224","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1010125","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010125","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Reduced inequalities","id":"https://metadata.un.org/sdg/10","score":0.8199999928474426}],"awards":[{"id":"https://openalex.org/G2465893628","display_name":"Peta-5: A National Facility for Petascale Data Intensive Computation and Analytics","funder_award_id":"EP/P020259/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G3688903959","display_name":"DTP 2018-19 University of Cambridge","funder_award_id":"EP/R513180/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G5258663329","display_name":null,"funder_award_id":"EP/P020259/","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G5368029276","display_name":null,"funder_award_id":"EP/P020259/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G6661763476","display_name":null,"funder_award_id":"EP/P020259/1","funder_id":"https://openalex.org/F4320320273","funder_display_name":"University of Cambridge"},{"id":"https://openalex.org/G6875110320","display_name":null,"funder_award_id":"R513180/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G7282250571","display_name":null,"funder_award_id":"EP/R513180/1","funder_id":"https://openalex.org/F4320320273","funder_display_name":"University of Cambridge"}],"funders":[{"id":"https://openalex.org/F4320312927","display_name":"Dell EMC","ror":"https://ror.org/05rejmm18"},{"id":"https://openalex.org/F4320320273","display_name":"University of Cambridge","ror":"https://ror.org/013meh722"},{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"},{"id":"https://openalex.org/F4320334632","display_name":"Science and Technology Facilities Council","ror":"https://ror.org/057g20z61"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":72,"referenced_works":["https://openalex.org/W629058036","https://openalex.org/W1511920017","https://openalex.org/W1552465021","https://openalex.org/W1573787851","https://openalex.org/W1575475442","https://openalex.org/W1851737710","https://openalex.org/W1965415085","https://openalex.org/W1966522287","https://openalex.org/W1966976585","https://openalex.org/W1983261546","https://openalex.org/W1984260683","https://openalex.org/W1985693980","https://openalex.org/W1985724518","https://openalex.org/W2007320717","https://openalex.org/W2013595098","https://openalex.org/W2019197162","https://openalex.org/W2030596540","https://openalex.org/W2033084767","https://openalex.org/W2033347044","https://openalex.org/W2038926948","https://openalex.org/W2051063688","https://openalex.org/W2056137486","https://openalex.org/W2057742269","https://openalex.org/W2064052093","https://openalex.org/W2065731160","https://openalex.org/W2068491167","https://openalex.org/W2070190014","https://openalex.org/W2070503618","https://openalex.org/W2077613383","https://openalex.org/W2078770871","https://openalex.org/W2080647790","https://openalex.org/W2088451270","https://openalex.org/W2098049098","https://openalex.org/W2099212793","https://openalex.org/W2099325940","https://openalex.org/W2100690809","https://openalex.org/W2113602085","https://openalex.org/W2115095238","https://openalex.org/W2118344980","https://openalex.org/W2119044344","https://openalex.org/W2122723212","https://openalex.org/W2124139689","https://openalex.org/W2124365537","https://openalex.org/W2124595626","https://openalex.org/W2129541947","https://openalex.org/W2131382016","https://openalex.org/W2140926876","https://openalex.org/W2140951186","https://openalex.org/W2153587490","https://openalex.org/W2158548907","https://openalex.org/W2159275109","https://openalex.org/W2161108750","https://openalex.org/W2162914513","https://openalex.org/W2163435738","https://openalex.org/W2166147286","https://openalex.org/W2169899471","https://openalex.org/W2347030981","https://openalex.org/W2465903376","https://openalex.org/W2763932617","https://openalex.org/W2894832019","https://openalex.org/W2950947371","https://openalex.org/W2951404000","https://openalex.org/W2953910048","https://openalex.org/W2959231597","https://openalex.org/W3011709063","https://openalex.org/W3088070171","https://openalex.org/W3131112900","https://openalex.org/W3173320682","https://openalex.org/W4235416980","https://openalex.org/W4239089151","https://openalex.org/W4388153632","https://openalex.org/W6619962881"],"related_works":["https://openalex.org/W2084049772","https://openalex.org/W2089906827","https://openalex.org/W4229458626","https://openalex.org/W3033359651","https://openalex.org/W2090302847","https://openalex.org/W2093342101","https://openalex.org/W17971944","https://openalex.org/W4210403379","https://openalex.org/W1597399711","https://openalex.org/W2145449008"],"abstract_inverted_index":{"Viral":[0],"superinfection":[1,26,56,109,132],"occurs":[2],"when":[3,55],"multiple":[4],"viral":[5,15,41,92,142],"particles":[6],"subsequently":[7],"infect":[8],"the":[9,35,40,60,66,76,91,119,137,145],"same":[10],"host.":[11],"In":[12],"nature,":[13],"several":[14],"species":[16],"are":[17],"found":[18],"to":[19,24],"have":[20],"evolved":[21],"diverse":[22],"mechanisms":[23],"prevent":[25],"(superinfection":[27],"exclusion)":[28],"but":[29],"how":[30],"this":[31],"strategic":[32],"choice":[33],"impacts":[34],"fate":[36],"of":[37,62,68,140],"mutations":[38,64],"in":[39,82,144],"population":[42,116],"remains":[43],"unclear.":[44],"Using":[45],"stochastic":[46],"simulations,":[47],"we":[48,72,102],"find":[49,74],"that":[50,75,105,130],"genetic":[51],"drift":[52],"is":[53,86,148],"suppressed":[54],"occurs,":[57],"thus":[58],"facilitating":[59],"fixation":[61],"beneficial":[63],"and":[65],"removal":[67],"deleterious":[69],"ones.":[70],"Interestingly,":[71],"also":[73],"competitive":[77],"(dis)advantage":[78],"associated":[79],"with":[80,108],"variations":[81],"life":[83],"history":[84],"parameters":[85],"not":[87],"necessarily":[88],"captured":[89],"by":[90],"growth":[93,125],"rate":[94],"for":[95],"either":[96],"infection":[97],"strategy.":[98,152],"Putting":[99],"these":[100],"together,":[101],"then":[103],"show":[104],"a":[106,114,122,141,150],"mutant":[107],"exclusion":[110,133],"will":[111],"easily":[112],"overtake":[113],"superinfecting":[115],"even":[117],"if":[118],"latter":[120],"has":[121],"much":[123],"higher":[124],"rate.":[126],"Our":[127],"findings":[128],"suggest":[129],"while":[131],"can":[134],"negatively":[135],"impact":[136],"long-term":[138],"adaptation":[139],"population,":[143],"short-term":[146],"it":[147],"ultimately":[149],"winning":[151]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":19},{"year":2024,"cited_by_count":22},{"year":2023,"cited_by_count":13},{"year":2022,"cited_by_count":4}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
