{"id":"https://openalex.org/W4224209549","doi":"https://doi.org/10.1371/journal.pcbi.1010066","title":"Host phenotype classification from human microbiome data is mainly driven by the presence of microbial taxa","display_name":"Host phenotype classification from human microbiome data is mainly driven by the presence of microbial taxa","publication_year":2022,"publication_date":"2022-04-21","ids":{"openalex":"https://openalex.org/W4224209549","doi":"https://doi.org/10.1371/journal.pcbi.1010066","pmid":"https://pubmed.ncbi.nlm.nih.gov/35446845"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1010066","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010066","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1371/journal.pcbi.1010066","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5043928278","display_name":"Renato Giliberti","orcid":"https://orcid.org/0000-0001-6120-1517"},"institutions":[{"id":"https://openalex.org/I4210117450","display_name":"Federico II University Hospital","ror":"https://ror.org/02jr6tp70","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210117450","https://openalex.org/I71267560"]},{"id":"https://openalex.org/I71267560","display_name":"University of Naples Federico II","ror":"https://ror.org/05290cv24","country_code":"IT","type":"education","lineage":["https://openalex.org/I71267560"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Renato Giliberti","raw_affiliation_strings":["Department of Agricultural Sciences, University of Naples Federico II, Portici, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Agricultural Sciences, University of Naples Federico II, Portici, Italy","institution_ids":["https://openalex.org/I4210117450","https://openalex.org/I71267560"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035038630","display_name":"Sara Cavali\u00e8re","orcid":"https://orcid.org/0000-0003-0939-108X"},"institutions":[{"id":"https://openalex.org/I4210117450","display_name":"Federico II University Hospital","ror":"https://ror.org/02jr6tp70","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210117450","https://openalex.org/I71267560"]},{"id":"https://openalex.org/I71267560","display_name":"University of Naples Federico II","ror":"https://ror.org/05290cv24","country_code":"IT","type":"education","lineage":["https://openalex.org/I71267560"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Sara Cavaliere","raw_affiliation_strings":["Department of Agricultural Sciences, University of Naples Federico II, Portici, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Agricultural Sciences, University of Naples Federico II, Portici, Italy","institution_ids":["https://openalex.org/I4210117450","https://openalex.org/I71267560"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048083514","display_name":"Italia Elisa Mauriello","orcid":null},"institutions":[{"id":"https://openalex.org/I4210117450","display_name":"Federico II University Hospital","ror":"https://ror.org/02jr6tp70","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210117450","https://openalex.org/I71267560"]},{"id":"https://openalex.org/I71267560","display_name":"University of Naples Federico II","ror":"https://ror.org/05290cv24","country_code":"IT","type":"education","lineage":["https://openalex.org/I71267560"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Italia Elisa Mauriello","raw_affiliation_strings":["Department of Agricultural Sciences, University of Naples Federico II, Portici, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Agricultural Sciences, University of Naples Federico II, Portici, Italy","institution_ids":["https://openalex.org/I4210117450","https://openalex.org/I71267560"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026270573","display_name":"Danilo Ercolini","orcid":"https://orcid.org/0000-0003-3061-9560"},"institutions":[{"id":"https://openalex.org/I4210117450","display_name":"Federico II University Hospital","ror":"https://ror.org/02jr6tp70","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210117450","https://openalex.org/I71267560"]},{"id":"https://openalex.org/I71267560","display_name":"University of Naples Federico II","ror":"https://ror.org/05290cv24","country_code":"IT","type":"education","lineage":["https://openalex.org/I71267560"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Danilo Ercolini","raw_affiliation_strings":["Department of Agricultural Sciences, University of Naples Federico II, Portici, Italy","Task Force on Microbiome Studies, University of Naples Federico II, Naples, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Agricultural Sciences, University of Naples Federico II, Portici, Italy","institution_ids":["https://openalex.org/I4210117450","https://openalex.org/I71267560"]},{"raw_affiliation_string":"Task Force on Microbiome Studies, University of Naples Federico II, Naples, Italy","institution_ids":["https://openalex.org/I71267560"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5075665406","display_name":"Edoardo Pasolli","orcid":"https://orcid.org/0000-0003-0799-3490"},"institutions":[{"id":"https://openalex.org/I4210117450","display_name":"Federico II University Hospital","ror":"https://ror.org/02jr6tp70","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210117450","https://openalex.org/I71267560"]},{"id":"https://openalex.org/I71267560","display_name":"University of Naples Federico II","ror":"https://ror.org/05290cv24","country_code":"IT","type":"education","lineage":["https://openalex.org/I71267560"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Edoardo Pasolli","raw_affiliation_strings":["Department of Agricultural Sciences, University of Naples Federico II, Portici, Italy","Task Force on Microbiome Studies, University of Naples Federico II, Naples, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Agricultural Sciences, University of Naples Federico II, Portici, Italy","institution_ids":["https://openalex.org/I4210117450","https://openalex.org/I71267560"]},{"raw_affiliation_string":"Task Force on Microbiome Studies, University of Naples Federico II, Naples, Italy","institution_ids":["https://openalex.org/I71267560"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5075665406"],"corresponding_institution_ids":["https://openalex.org/I4210117450","https://openalex.org/I71267560"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":2.3452,"has_fulltext":false,"cited_by_count":33,"citation_normalized_percentile":{"value":0.89258244,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"18","issue":"4","first_page":"e1010066","last_page":"e1010066"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9894000291824341,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10141","display_name":"Probiotics and Fermented Foods","score":0.9750000238418579,"subfield":{"id":"https://openalex.org/subfields/1106","display_name":"Food Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/taxon","display_name":"Taxon","score":0.7737687230110168},{"id":"https://openalex.org/keywords/microbiome","display_name":"Microbiome","score":0.7404365539550781},{"id":"https://openalex.org/keywords/relative-species-abundance","display_name":"Relative species abundance","score":0.6903136968612671},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6702415943145752},{"id":"https://openalex.org/keywords/taxonomic-rank","display_name":"Taxonomic rank","score":0.6569544672966003},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.6245301365852356},{"id":"https://openalex.org/keywords/abundance","display_name":"Abundance (ecology)","score":0.5982587933540344},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.4477812349796295},{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.42561736702919006},{"id":"https://openalex.org/keywords/statistical-power","display_name":"Statistical power","score":0.410069078207016},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3859049677848816},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.35886722803115845},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3447566330432892},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2489924132823944},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.22134563326835632},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.18424531817436218},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11631003022193909}],"concepts":[{"id":"https://openalex.org/C71640776","wikidata":"https://www.wikidata.org/wiki/Q16521","display_name":"Taxon","level":2,"score":0.7737687230110168},{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.7404365539550781},{"id":"https://openalex.org/C122325731","wikidata":"https://www.wikidata.org/wiki/Q3738459","display_name":"Relative species abundance","level":3,"score":0.6903136968612671},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6702415943145752},{"id":"https://openalex.org/C189592816","wikidata":"https://www.wikidata.org/wiki/Q427626","display_name":"Taxonomic rank","level":3,"score":0.6569544672966003},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.6245301365852356},{"id":"https://openalex.org/C77077793","wikidata":"https://www.wikidata.org/wiki/Q336019","display_name":"Abundance (ecology)","level":2,"score":0.5982587933540344},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.4477812349796295},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.42561736702919006},{"id":"https://openalex.org/C96608239","wikidata":"https://www.wikidata.org/wiki/Q1199823","display_name":"Statistical power","level":2,"score":0.410069078207016},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3859049677848816},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.35886722803115845},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3447566330432892},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2489924132823944},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.22134563326835632},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.18424531817436218},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11631003022193909},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1371/journal.pcbi.1010066","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010066","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:35446845","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35446845","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:RePEc:plo:pcbi00:1010066","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1010066","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:2d73ebacb2bf40c7bd4404b5fd321e72","is_oa":true,"landing_page_url":"https://doaj.org/article/2d73ebacb2bf40c7bd4404b5fd321e72","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 18, Iss 4, p e1010066 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9064115","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9064115","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1010066","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010066","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/16","score":0.46000000834465027,"display_name":"Peace, Justice and strong institutions"}],"awards":[{"id":"https://openalex.org/G8947524883","display_name":null,"funder_award_id":"P.O.R. Campania FSE 2014/2020","funder_id":"https://openalex.org/F4320322218","funder_display_name":"Regione Campania"}],"funders":[{"id":"https://openalex.org/F4320322218","display_name":"Regione Campania","ror":"https://ror.org/02kg21794"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":63,"referenced_works":["https://openalex.org/W1935310079","https://openalex.org/W1963994909","https://openalex.org/W1964027278","https://openalex.org/W1978709058","https://openalex.org/W2001561488","https://openalex.org/W2016073955","https://openalex.org/W2023615726","https://openalex.org/W2071841602","https://openalex.org/W2100080086","https://openalex.org/W2122825543","https://openalex.org/W2125826054","https://openalex.org/W2128769815","https://openalex.org/W2130725058","https://openalex.org/W2134809046","https://openalex.org/W2135046866","https://openalex.org/W2157159562","https://openalex.org/W2170951896","https://openalex.org/W2178425989","https://openalex.org/W2180202274","https://openalex.org/W2328023807","https://openalex.org/W2377027462","https://openalex.org/W2460413948","https://openalex.org/W2473355215","https://openalex.org/W2508175702","https://openalex.org/W2531800017","https://openalex.org/W2563720483","https://openalex.org/W2584763199","https://openalex.org/W2585920057","https://openalex.org/W2590064240","https://openalex.org/W2761865284","https://openalex.org/W2771045365","https://openalex.org/W2783601877","https://openalex.org/W2808466192","https://openalex.org/W2887410082","https://openalex.org/W2896617742","https://openalex.org/W2921789835","https://openalex.org/W2925679746","https://openalex.org/W2927453907","https://openalex.org/W2932049125","https://openalex.org/W2943091811","https://openalex.org/W2949004447","https://openalex.org/W2950868848","https://openalex.org/W2951061751","https://openalex.org/W2951934944","https://openalex.org/W2952200190","https://openalex.org/W2952557828","https://openalex.org/W2953583829","https://openalex.org/W2956719809","https://openalex.org/W2983483109","https://openalex.org/W3007138124","https://openalex.org/W3014810983","https://openalex.org/W3024771599","https://openalex.org/W3026004291","https://openalex.org/W3043729147","https://openalex.org/W3095838951","https://openalex.org/W3097003771","https://openalex.org/W3127298225","https://openalex.org/W3128236819","https://openalex.org/W3132461044","https://openalex.org/W3143324940","https://openalex.org/W3159504416","https://openalex.org/W3198822282","https://openalex.org/W4239510810"],"related_works":["https://openalex.org/W638577851","https://openalex.org/W2968354375","https://openalex.org/W2359440920","https://openalex.org/W2889550857","https://openalex.org/W3013372948","https://openalex.org/W3139084279","https://openalex.org/W200507450","https://openalex.org/W2150484441","https://openalex.org/W2176518797","https://openalex.org/W4224209549"],"abstract_inverted_index":{"Machine":[0],"learning-based":[1],"classification":[2,137],"approaches":[3],"are":[4,15,34,141,161],"widely":[5],"used":[6],"to":[7,41,72,132,143,155],"predict":[8],"host":[9],"phenotypes":[10],"from":[11,44,177],"microbiome":[12],"data.":[13],"Classifiers":[14],"typically":[16],"employed":[17],"by":[18,98,151],"considering":[19],"operational":[20],"taxonomic":[21,114,166],"units":[22],"or":[23],"relative":[24,50,126],"abundance":[25,51,68,127],"profiles":[26],"as":[27],"input":[28],"features.":[29],"Such":[30,139],"types":[31],"of":[32,52,69,128,146],"data":[33],"intrinsically":[35],"sparse,":[36],"which":[37],"opens":[38],"the":[39,45,49,58,63,67,87,121,125,144,147],"opportunity":[40],"make":[42],"predictions":[43],"presence/absence":[46],"rather":[47,65,123],"than":[48,66,124],"microbial":[53,130],"taxa.":[54,159],"This":[55],"also":[56],"poses":[57],"question":[59],"whether":[60],"it":[61,119],"is":[62,120],"presence":[64,122],"particular":[70],"taxa":[71,131],"be":[73,133],"relevant":[74],"for":[75],"discrimination":[76],"purposes,":[77],"an":[78],"aspect":[79],"that":[80,118],"has":[81],"been":[82],"so":[83],"far":[84],"overlooked":[85],"in":[86],"literature.":[88],"In":[89],"this":[90,96],"paper,":[91],"we":[92,116],"aim":[93],"at":[94,164],"filling":[95],"gap":[97],"performing":[99],"a":[100],"meta-analysis":[101],"on":[102,170],"4,128":[103],"publicly":[104],"available":[105],"metagenomes":[106],"associated":[107],"with":[108],"multiple":[109],"case-control":[110,180],"studies.":[111,181],"At":[112],"species-level":[113],"resolution,":[115],"show":[117],"specific":[129],"important":[134],"when":[135],"building":[136],"models.":[138],"findings":[140],"robust":[142],"choice":[145],"classifier":[148],"and":[149,168],"confirmed":[150,163],"statistical":[152],"tests":[153],"applied":[154],"identifying":[156],"differentially":[157],"abundant/present":[158],"Results":[160],"further":[162],"coarser":[165],"resolutions":[167],"validated":[169],"4,026":[171],"additional":[172],"16S":[173],"rRNA":[174],"samples":[175],"coming":[176],"30":[178],"public":[179]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":4}],"updated_date":"2026-04-02T15:55:50.835912","created_date":"2025-10-10T00:00:00"}
