{"id":"https://openalex.org/W4223570860","doi":"https://doi.org/10.1371/journal.pcbi.1010013","title":"Are transient protein-protein interactions more dispensable?","display_name":"Are transient protein-protein interactions more dispensable?","publication_year":2022,"publication_date":"2022-04-11","ids":{"openalex":"https://openalex.org/W4223570860","doi":"https://doi.org/10.1371/journal.pcbi.1010013","pmid":"https://pubmed.ncbi.nlm.nih.gov/35404956"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1010013","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010013","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1371/journal.pcbi.1010013","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5088137705","display_name":"Mohamed Ghadie","orcid":"https://orcid.org/0000-0001-8300-7360"},"institutions":[{"id":"https://openalex.org/I5023651","display_name":"McGill University","ror":"https://ror.org/01pxwe438","country_code":"CA","type":"education","lineage":["https://openalex.org/I5023651"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Mohamed Ali Ghadie","raw_affiliation_strings":["Department of Bioengineering, McGill University, Montreal, Canada"],"raw_orcid":"https://orcid.org/0000-0001-8300-7360","affiliations":[{"raw_affiliation_string":"Department of Bioengineering, McGill University, Montreal, Canada","institution_ids":["https://openalex.org/I5023651"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5011892455","display_name":"Yu Xia","orcid":"https://orcid.org/0000-0002-5596-5518"},"institutions":[{"id":"https://openalex.org/I5023651","display_name":"McGill University","ror":"https://ror.org/01pxwe438","country_code":"CA","type":"education","lineage":["https://openalex.org/I5023651"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Yu Xia","raw_affiliation_strings":["Department of Bioengineering, McGill University, Montreal, Canada"],"raw_orcid":"https://orcid.org/0000-0002-5596-5518","affiliations":[{"raw_affiliation_string":"Department of Bioengineering, McGill University, Montreal, Canada","institution_ids":["https://openalex.org/I5023651"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5011892455"],"corresponding_institution_ids":["https://openalex.org/I5023651"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":1.3019,"has_fulltext":false,"cited_by_count":18,"citation_normalized_percentile":{"value":0.78997467,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"18","issue":"4","first_page":"e1010013","last_page":"e1010013"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.98580002784729,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9825999736785889,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interactome","display_name":"Interactome","score":0.9852256774902344},{"id":"https://openalex.org/keywords/transient","display_name":"Transient (computer programming)","score":0.6579431295394897},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6089552044868469},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.4825155436992645},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4539016783237457},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.441249281167984},{"id":"https://openalex.org/keywords/structural-bioinformatics","display_name":"Structural bioinformatics","score":0.4357254207134247},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.32489103078842163},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3205888271331787},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2907613515853882},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.2759799361228943},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.14937862753868103},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.11291053891181946}],"concepts":[{"id":"https://openalex.org/C9760119","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interactome","level":3,"score":0.9852256774902344},{"id":"https://openalex.org/C2780799671","wikidata":"https://www.wikidata.org/wiki/Q17087362","display_name":"Transient (computer programming)","level":2,"score":0.6579431295394897},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6089552044868469},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4825155436992645},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4539016783237457},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.441249281167984},{"id":"https://openalex.org/C69131567","wikidata":"https://www.wikidata.org/wiki/Q2068215","display_name":"Structural bioinformatics","level":3,"score":0.4357254207134247},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.32489103078842163},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3205888271331787},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2907613515853882},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.2759799361228943},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.14937862753868103},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.11291053891181946},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1371/journal.pcbi.1010013","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010013","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:35404956","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35404956","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:doaj.org/article:255265dfa8474f71a1c875f57ef633a1","is_oa":true,"landing_page_url":"https://doaj.org/article/255265dfa8474f71a1c875f57ef633a1","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 18, Iss 4 (2022)","raw_type":"article"},{"id":"pmh:oai:doaj.org/article:e1c7a9b60ba34acf9f3a58caf24552d5","is_oa":true,"landing_page_url":"https://doaj.org/article/e1c7a9b60ba34acf9f3a58caf24552d5","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 18, Iss 4, p e1010013 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9000134","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9000134","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1010013","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010013","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6523731343","display_name":null,"funder_award_id":"RGPAS-2019-00012","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G7337281742","display_name":null,"funder_award_id":"JELF-33732","funder_id":"https://openalex.org/F4320319952","funder_display_name":"Canada Foundation for Innovation"},{"id":"https://openalex.org/G7907496986","display_name":null,"funder_award_id":"RGPIN-2019-05952","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G832689143","display_name":null,"funder_award_id":"RGPIN-2019","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"}],"funders":[{"id":"https://openalex.org/F4320319952","display_name":"Canada Foundation for Innovation","ror":"https://ror.org/000az4664"},{"id":"https://openalex.org/F4320320994","display_name":"Canada Research Chairs","ror":"https://ror.org/0517h6h17"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":101,"referenced_works":["https://openalex.org/W78816759","https://openalex.org/W1030883578","https://openalex.org/W1607931568","https://openalex.org/W1617947194","https://openalex.org/W1777916189","https://openalex.org/W1926568554","https://openalex.org/W1965379872","https://openalex.org/W1966841369","https://openalex.org/W1974156712","https://openalex.org/W1979601325","https://openalex.org/W1980800453","https://openalex.org/W1981409633","https://openalex.org/W1984230217","https://openalex.org/W1984567848","https://openalex.org/W1986223165","https://openalex.org/W1987471534","https://openalex.org/W1987749411","https://openalex.org/W1992983658","https://openalex.org/W1995808589","https://openalex.org/W2009405916","https://openalex.org/W2012852001","https://openalex.org/W2015094506","https://openalex.org/W2022519211","https://openalex.org/W2023490488","https://openalex.org/W2025658961","https://openalex.org/W2031616673","https://openalex.org/W2036402252","https://openalex.org/W2037048830","https://openalex.org/W2043764521","https://openalex.org/W2044305584","https://openalex.org/W2045501270","https://openalex.org/W2050526879","https://openalex.org/W2055043387","https://openalex.org/W2056782561","https://openalex.org/W2061439657","https://openalex.org/W2063810968","https://openalex.org/W2074205615","https://openalex.org/W2075361934","https://openalex.org/W2078663610","https://openalex.org/W2078964925","https://openalex.org/W2079048469","https://openalex.org/W2081375228","https://openalex.org/W2082753694","https://openalex.org/W2085037886","https://openalex.org/W2098869926","https://openalex.org/W2098979213","https://openalex.org/W2100070946","https://openalex.org/W2101370506","https://openalex.org/W2113834377","https://openalex.org/W2118258530","https://openalex.org/W2119097398","https://openalex.org/W2122732537","https://openalex.org/W2123357765","https://openalex.org/W2131947487","https://openalex.org/W2136525667","https://openalex.org/W2140952049","https://openalex.org/W2149285542","https://openalex.org/W2150066952","https://openalex.org/W2157989234","https://openalex.org/W2162128823","https://openalex.org/W2164683872","https://openalex.org/W2165489841","https://openalex.org/W2165534020","https://openalex.org/W2165997736","https://openalex.org/W2166496883","https://openalex.org/W2174602966","https://openalex.org/W2239238081","https://openalex.org/W2258573009","https://openalex.org/W2320983896","https://openalex.org/W2338649679","https://openalex.org/W2530330401","https://openalex.org/W2554576124","https://openalex.org/W2579204739","https://openalex.org/W2594030753","https://openalex.org/W2603587832","https://openalex.org/W2605068739","https://openalex.org/W2611573275","https://openalex.org/W2616561032","https://openalex.org/W2619280902","https://openalex.org/W2624021832","https://openalex.org/W2749136581","https://openalex.org/W2766113956","https://openalex.org/W2766290879","https://openalex.org/W2890783151","https://openalex.org/W2903777166","https://openalex.org/W2909255640","https://openalex.org/W2945403072","https://openalex.org/W2953103783","https://openalex.org/W2954926994","https://openalex.org/W2964314049","https://openalex.org/W2981854429","https://openalex.org/W2988357750","https://openalex.org/W2988808535","https://openalex.org/W3015964336","https://openalex.org/W3083008290","https://openalex.org/W3087371631","https://openalex.org/W3197206719","https://openalex.org/W4211196614","https://openalex.org/W4248175757","https://openalex.org/W4252232449","https://openalex.org/W6770400242"],"related_works":["https://openalex.org/W2152546257","https://openalex.org/W1500663296","https://openalex.org/W2018720220","https://openalex.org/W4252442860","https://openalex.org/W3159731292","https://openalex.org/W2178844921","https://openalex.org/W2162117109","https://openalex.org/W2392586760","https://openalex.org/W4319230148","https://openalex.org/W2121928892"],"abstract_inverted_index":{"Protein-protein":[0],"interactions":[1,157],"(PPIs)":[2],"are":[3,20,31,145,158],"key":[4],"drivers":[5],"of":[6,103,139],"cell":[7],"function":[8],"and":[9,37,44,71,82,92,99,113,125,142,155],"evolution.":[10],"While":[11],"it":[12,25],"is":[13],"widely":[14],"assumed":[15],"that":[16,133],"most":[17],"permanent":[18,45,77,126,143,156],"PPIs":[19,30,43,46,75,78,124,144],"important":[21],"for":[22,69,106],"cellular":[23],"function,":[24],"remains":[26],"unclear":[27],"whether":[28],"transient":[29,42,74,123,141,154],"equally":[32],"important.":[33],"Here,":[34],"we":[35,58,131],"estimate":[36,132],"compare":[38],"dispensable":[39],"content":[40],"among":[41],"in":[47,165],"human.":[48],"Starting":[49],"with":[50],"a":[51,60,134],"human":[52,61,167],"reference":[53],"interactome":[54,63],"mapped":[55],"by":[56,64],"experiments,":[57],"construct":[59],"structural":[62,67,81,97],"building":[65],"three-dimensional":[66],"models":[68],"PPIs,":[70],"then":[72],"distinguish":[73],"from":[76,89],"using":[79],"several":[80],"biophysical":[83],"properties.":[84],"We":[85],"map":[86],"common":[87,107],"mutations":[88,94,108,115],"healthy":[90],"individuals":[91],"disease-causing":[93],"onto":[95],"the":[96,104,166],"interactome,":[98],"perform":[100],"structure-based":[101],"calculations":[102],"probabilities":[105],"(assumed":[109,116],"to":[110,117,121,160],"be":[111,118],"neutral)":[112],"disease":[114],"mildly":[119],"deleterious)":[120],"disrupt":[122],"PPIs.":[127],"Using":[128],"Bayes'":[129],"theorem":[130],"similarly":[135,161],"small":[136],"fraction":[137],"(<~20%)":[138],"both":[140],"completely":[146],"dispensable,":[147],"i.e.,":[148],"effectively":[149],"neutral":[150],"upon":[151],"disruption.":[152],"Hence,":[153],"subject":[159],"strong":[162],"selective":[163],"constraints":[164],"interactome.":[168]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":3}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
