{"id":"https://openalex.org/W4220726519","doi":"https://doi.org/10.1371/journal.pcbi.1009953","title":"Investigating key cell types and molecules dynamics in PyMT mice model of breast cancer through a mathematical model","display_name":"Investigating key cell types and molecules dynamics in PyMT mice model of breast cancer through a mathematical model","publication_year":2022,"publication_date":"2022-03-16","ids":{"openalex":"https://openalex.org/W4220726519","doi":"https://doi.org/10.1371/journal.pcbi.1009953","pmid":"https://pubmed.ncbi.nlm.nih.gov/35294447"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1009953","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1009953","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1009953&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1009953&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044847907","display_name":"Navid Mohammad Mirzaei","orcid":"https://orcid.org/0000-0002-0971-0514"},"institutions":[{"id":"https://openalex.org/I24603500","display_name":"University of Massachusetts Amherst","ror":"https://ror.org/0072zz521","country_code":"US","type":"education","lineage":["https://openalex.org/I24603500"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Navid Mohammad Mirzaei","raw_affiliation_strings":["Department of Mathematics and Statistics, University of Massachusetts Amherst, Amherst, Massachusetts, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Statistics, University of Massachusetts Amherst, Amherst, Massachusetts, United States of America","institution_ids":["https://openalex.org/I24603500"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074987124","display_name":"Navid Changizi","orcid":"https://orcid.org/0000-0001-8003-5403"},"institutions":[{"id":"https://openalex.org/I100633361","display_name":"University of Massachusetts Dartmouth","ror":"https://ror.org/00fzmm222","country_code":"US","type":"education","lineage":["https://openalex.org/I100633361"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Navid Changizi","raw_affiliation_strings":["Department of Civil and Environmental Engineering, University of Massachusetts, Dartmouth, Massachusetts, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Civil and Environmental Engineering, University of Massachusetts, Dartmouth, Massachusetts, United States of America","institution_ids":["https://openalex.org/I100633361"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002671682","display_name":"Alireza Asadpoure","orcid":null},"institutions":[{"id":"https://openalex.org/I100633361","display_name":"University of Massachusetts Dartmouth","ror":"https://ror.org/00fzmm222","country_code":"US","type":"education","lineage":["https://openalex.org/I100633361"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alireza Asadpoure","raw_affiliation_strings":["Department of Civil and Environmental Engineering, University of Massachusetts, Dartmouth, Massachusetts, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Civil and Environmental Engineering, University of Massachusetts, Dartmouth, Massachusetts, United States of America","institution_ids":["https://openalex.org/I100633361"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082215319","display_name":"Sumeyye Su","orcid":"https://orcid.org/0000-0001-5221-413X"},"institutions":[{"id":"https://openalex.org/I24603500","display_name":"University of Massachusetts Amherst","ror":"https://ror.org/0072zz521","country_code":"US","type":"education","lineage":["https://openalex.org/I24603500"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sumeyye Su","raw_affiliation_strings":["Department of Mathematics and Statistics, University of Massachusetts Amherst, Amherst, Massachusetts, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Statistics, University of Massachusetts Amherst, Amherst, Massachusetts, United States of America","institution_ids":["https://openalex.org/I24603500"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008698219","display_name":"Dilruba Sofia","orcid":"https://orcid.org/0000-0002-1279-1626"},"institutions":[{"id":"https://openalex.org/I24603500","display_name":"University of Massachusetts Amherst","ror":"https://ror.org/0072zz521","country_code":"US","type":"education","lineage":["https://openalex.org/I24603500"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dilruba Sofia","raw_affiliation_strings":["Department of Mathematics and Statistics, University of Massachusetts Amherst, Amherst, Massachusetts, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Statistics, University of Massachusetts Amherst, Amherst, Massachusetts, United States of America","institution_ids":["https://openalex.org/I24603500"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037619159","display_name":"Zuzana Tat\u00e1rov\u00e1","orcid":"https://orcid.org/0000-0002-3128-7214"},"institutions":[{"id":"https://openalex.org/I165690674","display_name":"Oregon Health & Science University","ror":"https://ror.org/009avj582","country_code":"US","type":"education","lineage":["https://openalex.org/I165690674"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zuzana Tatarova","raw_affiliation_strings":["Department of Biomedical Engineering and OHSU Center for Spatial Systems Biomedicine (OCSSB), Oregon Health and Science University, Portland, Oregon, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering and OHSU Center for Spatial Systems Biomedicine (OCSSB), Oregon Health and Science University, Portland, Oregon, United States of America","institution_ids":["https://openalex.org/I165690674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004209082","display_name":"Ioannis K. Zervantonakis","orcid":"https://orcid.org/0000-0003-2386-9553"},"institutions":[{"id":"https://openalex.org/I4210128526","display_name":"UPMC Hillman Cancer Center","ror":"https://ror.org/03bw34a45","country_code":"US","type":"facility","lineage":["https://openalex.org/I170201317","https://openalex.org/I4210128526"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ioannis K. Zervantonakis","raw_affiliation_strings":["Department of Bioengineering, UPMC Hillman Cancer Center, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Bioengineering, UPMC Hillman Cancer Center, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America","institution_ids":["https://openalex.org/I4210128526"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003286550","display_name":"Young Hwan Chang","orcid":"https://orcid.org/0000-0001-8764-1959"},"institutions":[{"id":"https://openalex.org/I165690674","display_name":"Oregon Health & Science University","ror":"https://ror.org/009avj582","country_code":"US","type":"education","lineage":["https://openalex.org/I165690674"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Young Hwan Chang","raw_affiliation_strings":["Department of Biomedical Engineering and OHSU Center for Spatial Systems Biomedicine (OCSSB), Oregon Health and Science University, Portland, Oregon, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering and OHSU Center for Spatial Systems Biomedicine (OCSSB), Oregon Health and Science University, Portland, Oregon, United States of America","institution_ids":["https://openalex.org/I165690674"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068687664","display_name":"Leili Shahriyari","orcid":"https://orcid.org/0000-0001-6234-8449"},"institutions":[{"id":"https://openalex.org/I24603500","display_name":"University of Massachusetts Amherst","ror":"https://ror.org/0072zz521","country_code":"US","type":"education","lineage":["https://openalex.org/I24603500"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Leili Shahriyari","raw_affiliation_strings":["Department of Mathematics and Statistics, University of Massachusetts Amherst, Amherst, Massachusetts, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Statistics, University of Massachusetts Amherst, Amherst, Massachusetts, United States of America","institution_ids":["https://openalex.org/I24603500"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5068687664"],"corresponding_institution_ids":["https://openalex.org/I24603500"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":1.3696,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.77556389,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"18","issue":"3","first_page":"e1009953","last_page":"e1009953"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11829","display_name":"Mathematical Biology Tumor Growth","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/2611","display_name":"Modeling and Simulation"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11829","display_name":"Mathematical Biology Tumor Growth","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/2611","display_name":"Modeling and Simulation"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10342","display_name":"Circadian rhythm and melatonin","score":0.9825000166893005,"subfield":{"id":"https://openalex.org/subfields/2807","display_name":"Endocrine and Autonomic Systems"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/breast-cancer","display_name":"Breast cancer","score":0.6225216388702393},{"id":"https://openalex.org/keywords/dynamics","display_name":"Dynamics (music)","score":0.5379882454872131},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.5247331261634827},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.5188964009284973},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5084394812583923},{"id":"https://openalex.org/keywords/tumor-microenvironment","display_name":"Tumor microenvironment","score":0.4730861783027649},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.46477511525154114},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.45307397842407227},{"id":"https://openalex.org/keywords/cancer-cell","display_name":"Cancer cell","score":0.43572425842285156},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4305976331233978},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3985893130302429},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.37936246395111084},{"id":"https://openalex.org/keywords/cancer-research","display_name":"Cancer research","score":0.3438112735748291},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.32741856575012207},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.24865159392356873},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.2127784788608551},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.19690275192260742}],"concepts":[{"id":"https://openalex.org/C530470458","wikidata":"https://www.wikidata.org/wiki/Q128581","display_name":"Breast cancer","level":3,"score":0.6225216388702393},{"id":"https://openalex.org/C145912823","wikidata":"https://www.wikidata.org/wiki/Q113558","display_name":"Dynamics (music)","level":2,"score":0.5379882454872131},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5247331261634827},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.5188964009284973},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5084394812583923},{"id":"https://openalex.org/C2776107976","wikidata":"https://www.wikidata.org/wiki/Q1786433","display_name":"Tumor microenvironment","level":3,"score":0.4730861783027649},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.46477511525154114},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.45307397842407227},{"id":"https://openalex.org/C96232424","wikidata":"https://www.wikidata.org/wiki/Q4118072","display_name":"Cancer cell","level":3,"score":0.43572425842285156},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4305976331233978},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3985893130302429},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.37936246395111084},{"id":"https://openalex.org/C502942594","wikidata":"https://www.wikidata.org/wiki/Q3421914","display_name":"Cancer research","level":1,"score":0.3438112735748291},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.32741856575012207},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.24865159392356873},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.2127784788608551},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.19690275192260742},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D004195","descriptor_name":"Disease Models, Animal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004195","descriptor_name":"Disease Models, Animal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004195","descriptor_name":"Disease Models, Animal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004195","descriptor_name":"Disease Models, Animal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016207","descriptor_name":"Cytokines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016207","descriptor_name":"Cytokines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016207","descriptor_name":"Cytokines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016207","descriptor_name":"Cytokines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D045744","descriptor_name":"Cell Line, Tumor","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D045744","descriptor_name":"Cell Line, Tumor","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D045744","descriptor_name":"Cell Line, Tumor","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D045744","descriptor_name":"Cell Line, Tumor","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059016","descriptor_name":"Tumor Microenvironment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059016","descriptor_name":"Tumor Microenvironment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059016","descriptor_name":"Tumor Microenvironment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059016","descriptor_name":"Tumor Microenvironment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1371/journal.pcbi.1009953","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1009953","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1009953&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:35294447","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35294447","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:doaj.org/article:122095f35a6449aaaa3bbaf5e59e4063","is_oa":true,"landing_page_url":"https://doaj.org/article/122095f35a6449aaaa3bbaf5e59e4063","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 18, Iss 3, p e1009953 (2022)","raw_type":"article"},{"id":"pmh:oai:osti.gov:1855523","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1855523","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:osti.gov:1858038","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1858038","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:osti.gov:2472291","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/2472291","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8959189","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8959189","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1009953","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1009953","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1009953&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.8199999928474426,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G1065316766","display_name":null,"funder_award_id":"Award","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G1234541941","display_name":null,"funder_award_id":"75N91019D00024","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G1526780738","display_name":null,"funder_award_id":"U54CA209988","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G2132873222","display_name":null,"funder_award_id":"75N91019D00024","funder_id":"https://openalex.org/F4320313762","funder_display_name":"Frederick National Laboratory for Cancer Research"},{"id":"https://openalex.org/G2190355179","display_name":null,"funder_award_id":"U54CA209988","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2271303644","display_name":null,"funder_award_id":"75N91019D00024","funder_id":"https://openalex.org/F4320315952","funder_display_name":"Leidos"},{"id":"https://openalex.org/G2800232636","display_name":null,"funder_award_id":"Contract No. 75N91019D00024","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G3355748868","display_name":null,"funder_award_id":"Subcontract No. 21X131F part of the Leidos Biomed's prime Contract No. 75N91019D00024, Task Order No. 75N91019F00134","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G4689185066","display_name":null,"funder_award_id":"75N91019D00024","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G5061777570","display_name":null,"funder_award_id":"Contract No. 75N91019D00024","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6586383887","display_name":null,"funder_award_id":"DE-SC0021630","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G7340972926","display_name":null,"funder_award_id":"other","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G7637599077","display_name":null,"funder_award_id":"Leidos","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G8478642149","display_name":null,"funder_award_id":"CA209988","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G949985419","display_name":null,"funder_award_id":"under Subcontract No. 21X131F part of the Leidos Biomed\u2019s prime Contract No. 75N91019D00024, Task Order No. 75N91019F00134","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"}],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320313762","display_name":"Frederick National Laboratory for Cancer Research","ror":"https://ror.org/03v6m3209"},{"id":"https://openalex.org/F4320315952","display_name":"Leidos","ror":"https://ror.org/012cvds63"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4220726519.pdf","grobid_xml":"https://content.openalex.org/works/W4220726519.grobid-xml"},"referenced_works_count":160,"referenced_works":["https://openalex.org/W171177553","https://openalex.org/W1488814076","https://openalex.org/W1531194977","https://openalex.org/W1566992315","https://openalex.org/W1567302655","https://openalex.org/W1646309082","https://openalex.org/W1700373378","https://openalex.org/W1741129279","https://openalex.org/W1823780969","https://openalex.org/W1897144326","https://openalex.org/W1958804953","https://openalex.org/W1963717723","https://openalex.org/W1964346949","https://openalex.org/W1966857167","https://openalex.org/W1969305254","https://openalex.org/W1972473113","https://openalex.org/W1974839164","https://openalex.org/W1975672782","https://openalex.org/W1978099625","https://openalex.org/W1979550211","https://openalex.org/W1982467804","https://openalex.org/W1983516942","https://openalex.org/W1988945399","https://openalex.org/W1990844197","https://openalex.org/W1991602457","https://openalex.org/W1991808539","https://openalex.org/W1994190235","https://openalex.org/W1998646002","https://openalex.org/W2000201665","https://openalex.org/W2001802780","https://openalex.org/W2010111476","https://openalex.org/W2010158955","https://openalex.org/W2012739993","https://openalex.org/W2017846490","https://openalex.org/W2018408344","https://openalex.org/W2022189900","https://openalex.org/W2022873423","https://openalex.org/W2023295028","https://openalex.org/W2029068688","https://openalex.org/W2030779527","https://openalex.org/W2031188093","https://openalex.org/W2032972527","https://openalex.org/W2034141629","https://openalex.org/W2034418213","https://openalex.org/W2036087615","https://openalex.org/W2036159218","https://openalex.org/W2040957577","https://openalex.org/W2046290067","https://openalex.org/W2047470411","https://openalex.org/W2050578981","https://openalex.org/W2055568018","https://openalex.org/W2060185596","https://openalex.org/W2069027997","https://openalex.org/W2069598084","https://openalex.org/W2071069876","https://openalex.org/W2073762437","https://openalex.org/W2074958393","https://openalex.org/W2075394597","https://openalex.org/W2078643379","https://openalex.org/W2087459726","https://openalex.org/W2089238313","https://openalex.org/W2093450466","https://openalex.org/W2097862336","https://openalex.org/W2102282878","https://openalex.org/W2102458026","https://openalex.org/W2102798763","https://openalex.org/W2103816786","https://openalex.org/W2109590683","https://openalex.org/W2111104102","https://openalex.org/W2111449140","https://openalex.org/W2114933215","https://openalex.org/W2115226530","https://openalex.org/W2116760308","https://openalex.org/W2117433522","https://openalex.org/W2117796628","https://openalex.org/W2121472727","https://openalex.org/W2124145182","https://openalex.org/W2124963004","https://openalex.org/W2127035465","https://openalex.org/W2130639027","https://openalex.org/W2137018390","https://openalex.org/W2140326991","https://openalex.org/W2142530756","https://openalex.org/W2143998429","https://openalex.org/W2145207352","https://openalex.org/W2146099965","https://openalex.org/W2146758676","https://openalex.org/W2148965949","https://openalex.org/W2158195820","https://openalex.org/W2158734140","https://openalex.org/W2160908140","https://openalex.org/W2162707559","https://openalex.org/W2164381810","https://openalex.org/W2164714222","https://openalex.org/W2165685007","https://openalex.org/W2168667162","https://openalex.org/W2168887286","https://openalex.org/W2171811296","https://openalex.org/W2286493794","https://openalex.org/W2291386925","https://openalex.org/W2295810149","https://openalex.org/W2314318352","https://openalex.org/W2323572153","https://openalex.org/W2339025832","https://openalex.org/W2460544034","https://openalex.org/W2509987734","https://openalex.org/W2560035653","https://openalex.org/W2560217615","https://openalex.org/W2578402280","https://openalex.org/W2578648396","https://openalex.org/W2588557901","https://openalex.org/W2590513226","https://openalex.org/W2765398339","https://openalex.org/W2767753260","https://openalex.org/W2770898760","https://openalex.org/W2785327608","https://openalex.org/W2789200208","https://openalex.org/W2792558334","https://openalex.org/W2796493064","https://openalex.org/W2797542438","https://openalex.org/W2797866384","https://openalex.org/W2800672148","https://openalex.org/W2801459582","https://openalex.org/W2824090951","https://openalex.org/W2883101927","https://openalex.org/W2889189861","https://openalex.org/W2894776217","https://openalex.org/W2905644126","https://openalex.org/W2916435435","https://openalex.org/W2918688996","https://openalex.org/W2942610007","https://openalex.org/W2968373163","https://openalex.org/W2971896503","https://openalex.org/W2972584423","https://openalex.org/W2979647598","https://openalex.org/W3008937982","https://openalex.org/W3025420172","https://openalex.org/W3033562173","https://openalex.org/W3040802444","https://openalex.org/W3049545261","https://openalex.org/W3080129155","https://openalex.org/W3081250701","https://openalex.org/W3084867784","https://openalex.org/W3093868687","https://openalex.org/W3109445816","https://openalex.org/W3111152816","https://openalex.org/W3113452046","https://openalex.org/W3119005666","https://openalex.org/W3161179735","https://openalex.org/W3162613006","https://openalex.org/W3164349728","https://openalex.org/W3190256747","https://openalex.org/W3207884106","https://openalex.org/W4211194191","https://openalex.org/W4236831166","https://openalex.org/W4239560608","https://openalex.org/W4250883246","https://openalex.org/W6633658626","https://openalex.org/W6650481783","https://openalex.org/W6748422842"],"related_works":["https://openalex.org/W4307869277","https://openalex.org/W3109885192","https://openalex.org/W4366290863","https://openalex.org/W2148899314","https://openalex.org/W2381417252","https://openalex.org/W2778117422","https://openalex.org/W2902626376","https://openalex.org/W3207593162","https://openalex.org/W3013564512","https://openalex.org/W3006386809"],"abstract_inverted_index":{"The":[0,89,134],"most":[1],"common":[2],"kind":[3],"of":[4,42,59,68,92,102,123],"cancer":[5,51,145],"among":[6],"women":[7],"is":[8],"breast":[9,50],"cancer.":[10],"Understanding":[11],"the":[12,16,40,65,81,86,93,99,109,120,124,144],"tumor":[13],"microenvironment":[14],"and":[15,21,46,70,95,111,126,143],"interactions":[17],"between":[18,108,140],"individual":[19],"cells":[20,69,94],"cytokines":[22,47,96],"assists":[23],"us":[24],"in":[25,49],"arriving":[26],"at":[27],"more":[28],"effective":[29],"treatments.":[30],"Here,":[31],"we":[32],"develop":[33],"a":[34,60,75,105,115,129,137],"data-driven":[35],"mathematical":[36],"model":[37,62,125],"to":[38,63,79,118],"investigate":[39],"dynamics":[41,91],"key":[43],"cell":[44],"types":[45],"involved":[48],"development.":[52],"We":[53,72,113],"use":[54],"time-course":[55],"gene":[56],"expression":[57],"profiles":[58],"mouse":[61],"estimate":[64],"relative":[66],"abundance":[67],"cytokines.":[71],"then":[73,127],"employ":[74],"least-squares":[76],"optimization":[77],"method":[78],"evaluate":[80],"model's":[82],"parameters":[83,103,122],"based":[84],"on":[85,132],"mice":[87],"data.":[88],"resulting":[90],"obtained":[97],"from":[98],"optimal":[100],"set":[101],"exhibit":[104],"decent":[106],"agreement":[107],"data":[110],"predictions.":[112],"perform":[114,128],"sensitivity":[116],"analysis":[117],"identify":[119],"crucial":[121],"local":[130],"bifurcation":[131],"them.":[133],"results":[135],"reveal":[136],"strong":[138],"connection":[139],"adipocytes,":[141],"IL6,":[142],"population,":[146],"suggesting":[147],"them":[148],"as":[149],"potential":[150],"targets":[151],"for":[152],"therapies.":[153]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":3}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
