{"id":"https://openalex.org/W4220806121","doi":"https://doi.org/10.1371/journal.pcbi.1009947","title":"Comprehensive mouse microbiota genome catalog reveals major difference to its human counterpart","display_name":"Comprehensive mouse microbiota genome catalog reveals major difference to its human counterpart","publication_year":2022,"publication_date":"2022-03-08","ids":{"openalex":"https://openalex.org/W4220806121","doi":"https://doi.org/10.1371/journal.pcbi.1009947","pmid":"https://pubmed.ncbi.nlm.nih.gov/35259160"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1009947","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1009947","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1009947&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1009947&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042814828","display_name":"Silas Kieser","orcid":"https://orcid.org/0000-0002-5935-9734"},"institutions":[{"id":"https://openalex.org/I114457229","display_name":"University of Geneva","ror":"https://ror.org/01swzsf04","country_code":"CH","type":"education","lineage":["https://openalex.org/I114457229"]},{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Silas Kieser","raw_affiliation_strings":["Department of Cell Physiology and Metabolism, Faculty of Medicine, University of Geneva, Centre Medical Universitaire, Geneva, Switzerland","Diabetes Center, Faculty of Medicine, University of Geneva, Geneva, Switzerland","Swiss Institute of Bioinformatics, Geneva, Switzerland"],"affiliations":[{"raw_affiliation_string":"Department of Cell Physiology and Metabolism, Faculty of Medicine, University of Geneva, Centre Medical Universitaire, Geneva, Switzerland","institution_ids":["https://openalex.org/I114457229"]},{"raw_affiliation_string":"Diabetes Center, Faculty of Medicine, University of Geneva, Geneva, Switzerland","institution_ids":["https://openalex.org/I114457229"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics, Geneva, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029893038","display_name":"Evgeny M. Zdobnov","orcid":"https://orcid.org/0000-0002-5178-1498"},"institutions":[{"id":"https://openalex.org/I114457229","display_name":"University of Geneva","ror":"https://ror.org/01swzsf04","country_code":"CH","type":"education","lineage":["https://openalex.org/I114457229"]},{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Evgeny M. Zdobnov","raw_affiliation_strings":["Department of Genetic Medicine and Development, Faculty of Medicine, University of Geneva, Centre Medical Universitaire, Geneva, Switzerland","Institute of Genetics and Genomics in Geneva (iGE3), University of Geneva, Geneva, Switzerland","Swiss Institute of Bioinformatics, Geneva, Switzerland"],"affiliations":[{"raw_affiliation_string":"Department of Genetic Medicine and Development, Faculty of Medicine, University of Geneva, Centre Medical Universitaire, Geneva, Switzerland","institution_ids":["https://openalex.org/I114457229"]},{"raw_affiliation_string":"Institute of Genetics and Genomics in Geneva (iGE3), University of Geneva, Geneva, Switzerland","institution_ids":["https://openalex.org/I114457229"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics, Geneva, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5007570063","display_name":"Mirko Trajkovski","orcid":"https://orcid.org/0000-0002-3152-9551"},"institutions":[{"id":"https://openalex.org/I114457229","display_name":"University of Geneva","ror":"https://ror.org/01swzsf04","country_code":"CH","type":"education","lineage":["https://openalex.org/I114457229"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Mirko Trajkovski","raw_affiliation_strings":["Department of Cell Physiology and Metabolism, Faculty of Medicine, University of Geneva, Centre Medical Universitaire, Geneva, Switzerland","Diabetes Center, Faculty of Medicine, University of Geneva, Geneva, Switzerland","Institute of Genetics and Genomics in Geneva (iGE3), University of Geneva, Geneva, Switzerland"],"affiliations":[{"raw_affiliation_string":"Department of Cell Physiology and Metabolism, Faculty of Medicine, University of Geneva, Centre Medical Universitaire, Geneva, Switzerland","institution_ids":["https://openalex.org/I114457229"]},{"raw_affiliation_string":"Diabetes Center, Faculty of Medicine, University of Geneva, Geneva, Switzerland","institution_ids":["https://openalex.org/I114457229"]},{"raw_affiliation_string":"Institute of Genetics and Genomics in Geneva (iGE3), University of Geneva, Geneva, Switzerland","institution_ids":["https://openalex.org/I114457229"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5007570063","https://openalex.org/A5029893038"],"corresponding_institution_ids":["https://openalex.org/I114457229","https://openalex.org/I12708293"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":7.4643,"has_fulltext":false,"cited_by_count":95,"citation_normalized_percentile":{"value":0.98308897,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"18","issue":"3","first_page":"e1009947","last_page":"e1009947"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9843000173568726,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10141","display_name":"Probiotics and Fermented Foods","score":0.9814000129699707,"subfield":{"id":"https://openalex.org/subfields/1106","display_name":"Food Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8405375480651855},{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.834884762763977},{"id":"https://openalex.org/keywords/microbiome","display_name":"Microbiome","score":0.8005691170692444},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7604655027389526},{"id":"https://openalex.org/keywords/human-microbiome","display_name":"Human microbiome","score":0.6607658267021179},{"id":"https://openalex.org/keywords/human-microbiome-project","display_name":"Human Microbiome Project","score":0.6350120306015015},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.518038809299469},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5101585984230042},{"id":"https://openalex.org/keywords/gut-flora","display_name":"Gut flora","score":0.42842137813568115},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.422895610332489},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.23668089509010315}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8405375480651855},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.834884762763977},{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.8005691170692444},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7604655027389526},{"id":"https://openalex.org/C91478284","wikidata":"https://www.wikidata.org/wiki/Q6623796","display_name":"Human microbiome","level":3,"score":0.6607658267021179},{"id":"https://openalex.org/C190944805","wikidata":"https://www.wikidata.org/wiki/Q3922751","display_name":"Human Microbiome Project","level":4,"score":0.6350120306015015},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.518038809299469},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5101585984230042},{"id":"https://openalex.org/C539455810","wikidata":"https://www.wikidata.org/wiki/Q739734","display_name":"Gut flora","level":2,"score":0.42842137813568115},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.422895610332489},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.23668089509010315},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1371/journal.pcbi.1009947","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1009947","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1009947&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:35259160","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35259160","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:unige.ch:aou:unige:159654","is_oa":true,"landing_page_url":"https://archive-ouverte.unige.ch/unige:159654","pdf_url":null,"source":{"id":"https://openalex.org/S4306402259","display_name":"Archive ouverte UNIGE (University of Geneva)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I114457229","host_organization_name":"University of Geneva","host_organization_lineage":["https://openalex.org/I114457229"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology, vol. 18, no. 3 (2022) e1009947","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:doaj.org/article:fe9c50485279482c85192809ea687eff","is_oa":true,"landing_page_url":"https://doaj.org/article/fe9c50485279482c85192809ea687eff","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 18, Iss 3, p e1009947 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8932566","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8932566","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1009947","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1009947","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1009947&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.5899999737739563,"display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G1950512285","display_name":null,"funder_award_id":"310030_205042","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G6863858394","display_name":null,"funder_award_id":"815962, Healthybiota","funder_id":"https://openalex.org/F4320338335","funder_display_name":"H2020 European Research Council"}],"funders":[{"id":"https://openalex.org/F4320320924","display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung","ror":"https://ror.org/00yjd3n13"},{"id":"https://openalex.org/F4320338335","display_name":"H2020 European Research Council","ror":"https://ror.org/0472cxd90"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4220806121.pdf","grobid_xml":"https://content.openalex.org/works/W4220806121.grobid-xml"},"referenced_works_count":65,"referenced_works":["https://openalex.org/W1878521557","https://openalex.org/W1974418613","https://openalex.org/W2015925329","https://openalex.org/W2025530025","https://openalex.org/W2031611770","https://openalex.org/W2041287325","https://openalex.org/W2047868647","https://openalex.org/W2048853985","https://openalex.org/W2108865848","https://openalex.org/W2112364185","https://openalex.org/W2117736614","https://openalex.org/W2148103005","https://openalex.org/W2157253968","https://openalex.org/W2163940893","https://openalex.org/W2164410780","https://openalex.org/W2181471414","https://openalex.org/W2197368019","https://openalex.org/W2247891525","https://openalex.org/W2336817596","https://openalex.org/W2415054694","https://openalex.org/W2426140394","https://openalex.org/W2526966274","https://openalex.org/W2599417231","https://openalex.org/W2745006471","https://openalex.org/W2753961085","https://openalex.org/W2753963188","https://openalex.org/W2763194582","https://openalex.org/W2765417276","https://openalex.org/W2766758542","https://openalex.org/W2767407105","https://openalex.org/W2767590364","https://openalex.org/W2775608308","https://openalex.org/W2786358949","https://openalex.org/W2844283760","https://openalex.org/W2883879320","https://openalex.org/W2884834061","https://openalex.org/W2889019390","https://openalex.org/W2889413235","https://openalex.org/W2910615673","https://openalex.org/W2913972921","https://openalex.org/W2921815890","https://openalex.org/W2927961455","https://openalex.org/W2938868597","https://openalex.org/W2950785362","https://openalex.org/W2951254987","https://openalex.org/W2985711816","https://openalex.org/W2990618091","https://openalex.org/W2999728398","https://openalex.org/W3000477356","https://openalex.org/W3003257820","https://openalex.org/W3009533854","https://openalex.org/W3019706413","https://openalex.org/W3034087136","https://openalex.org/W3036135788","https://openalex.org/W3036934263","https://openalex.org/W3042305844","https://openalex.org/W3048272826","https://openalex.org/W3101241786","https://openalex.org/W3103145119","https://openalex.org/W3131540409","https://openalex.org/W3168040031","https://openalex.org/W3198378211","https://openalex.org/W4200524762","https://openalex.org/W4240001705","https://openalex.org/W6791137377"],"related_works":["https://openalex.org/W1968369492","https://openalex.org/W2043102924","https://openalex.org/W2995607319","https://openalex.org/W2391004329","https://openalex.org/W2315403509","https://openalex.org/W1222064643","https://openalex.org/W2624135745","https://openalex.org/W2591857450","https://openalex.org/W1542636957","https://openalex.org/W2467097829"],"abstract_inverted_index":{"Mouse":[0],"is":[1,41],"the":[2,8,16,21,29,101,108,125,133,144,150,165,175,183],"most":[3,166],"used":[4],"model":[5],"for":[6,185],"studying":[7],"impact":[9],"of":[10,18,77,100,118,141,169,174,187,191],"microbiota":[11,49,116,131,159],"on":[12],"its":[13],"host,":[14],"but":[15,146],"repertoire":[17],"species":[19,151,173],"from":[20,132],"mouse":[22,34,48,58,102,121,157,176],"gut":[23,59,103,158],"microbiome":[24,104,179],"remains":[25],"largely":[26,161],"unknown.":[27],"Accordingly,":[28],"similarity":[30],"between":[31],"human":[32,119,135,155,178],"and":[33,61,67,82,91,113,120,156,177,189],"microbiomes":[35],"at":[36,143,149,194],"a":[37,46],"low":[38],"taxonomic":[39],"level":[40],"not":[42],"clear.":[43],"We":[44],"construct":[45],"comprehensive":[47,167],"genome":[50],"(CMMG)":[51],"catalog":[52],"by":[53],"assembling":[54],"all":[55],"currently":[56],"available":[57],"metagenomes":[60],"combining":[62],"them":[63,123],"with":[64],"published":[65],"reference":[66],"metagenome-assembled":[68],"genomes.":[69],"The":[70],"41'798":[71],"genomes":[72,137],"cluster":[73],"into":[74],"1'573":[75],"species,":[76],"which":[78],"78.1%":[79],"are":[80,160],"uncultured,":[81],"we":[83],"discovered":[84],"226":[85],"new":[86,89,93,188],"genera,":[87],"seven":[88],"families,":[90],"one":[92],"order.":[94],"CMMG":[95,129,163],"enables":[96],"an":[97,139,195],"unprecedented":[98,196],"coverage":[99],"exceeding":[105],"86%,":[106],"increases":[107],"mapping":[109],"rate":[110],"over":[111],"four-fold,":[112],"allows":[114],"functional":[115],"analyses":[117],"linking":[122],"to":[124,130,180],"driver":[126],"species.":[127],"Comparing":[128],"unified":[134],"gastrointestinal":[136],"shows":[138],"overlap":[140],"62%":[142],"genus":[145],"only":[147],"10%":[148],"level,":[152],"demonstrating":[153],"that":[154],"distinct.":[162],"contains":[164],"collection":[168],"consistently":[170],"functionally":[171],"annotated":[172],"date,":[181],"setting":[182],"ground":[184],"analysis":[186],"reanalysis":[190],"existing":[192],"datasets":[193],"depth.":[197]},"counts_by_year":[{"year":2026,"cited_by_count":11},{"year":2025,"cited_by_count":26},{"year":2024,"cited_by_count":22},{"year":2023,"cited_by_count":23},{"year":2022,"cited_by_count":13}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
