{"id":"https://openalex.org/W4282833060","doi":"https://doi.org/10.1371/journal.pcbi.1009846","title":"cytoNet: Spatiotemporal network analysis of cell communities","display_name":"cytoNet: Spatiotemporal network analysis of cell communities","publication_year":2022,"publication_date":"2022-06-13","ids":{"openalex":"https://openalex.org/W4282833060","doi":"https://doi.org/10.1371/journal.pcbi.1009846","pmid":"https://pubmed.ncbi.nlm.nih.gov/35696439"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1009846","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1009846","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1009846&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1009846&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030835834","display_name":"Arun S. Mahadevan","orcid":"https://orcid.org/0000-0001-7315-8261"},"institutions":[{"id":"https://openalex.org/I74775410","display_name":"Rice University","ror":"https://ror.org/008zs3103","country_code":"US","type":"education","lineage":["https://openalex.org/I74775410"]},{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]},{"id":"https://openalex.org/I922845939","display_name":"Philadelphia University","ror":"https://ror.org/03zzmyz63","country_code":"US","type":"education","lineage":["https://openalex.org/I922845939"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Arun S. Mahadevan","raw_affiliation_strings":["Department of Bioengineering, Rice University, Houston, Texas, United States of America","Department of Bioengineering, University of Pennsylvania; Philadelphia, Pennsylvania, United States of America","Department of Bioengineering, University of Pennsylvania","Philadelphia, Pennsylvania, United States of America"],"raw_orcid":"https://orcid.org/0000-0001-7315-8261","affiliations":[{"raw_affiliation_string":"Department of Bioengineering, Rice University, Houston, Texas, United States of America","institution_ids":["https://openalex.org/I74775410"]},{"raw_affiliation_string":"Department of Bioengineering, University of Pennsylvania; Philadelphia, Pennsylvania, United States of America","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Department of Bioengineering, University of Pennsylvania","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Philadelphia, Pennsylvania, United States of America","institution_ids":["https://openalex.org/I922845939"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074511956","display_name":"Byron L. Long","orcid":null},"institutions":[{"id":"https://openalex.org/I45438204","display_name":"The University of Texas at San Antonio","ror":"https://ror.org/01kd65564","country_code":"US","type":"education","lineage":["https://openalex.org/I45438204"]},{"id":"https://openalex.org/I74775410","display_name":"Rice University","ror":"https://ror.org/008zs3103","country_code":"US","type":"education","lineage":["https://openalex.org/I74775410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Byron L. Long","raw_affiliation_strings":["Department of Bioengineering, Rice University, Houston, Texas, United States of America","Department of Biomedical Engineering, University of Texas at San Antonio, San Antonio, Texas, United States of America","Department of Computer Science, University of Texas at San Antonio, San Antonio, Texas, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioengineering, Rice University, Houston, Texas, United States of America","institution_ids":["https://openalex.org/I74775410"]},{"raw_affiliation_string":"Department of Biomedical Engineering, University of Texas at San Antonio, San Antonio, Texas, United States of America","institution_ids":["https://openalex.org/I45438204"]},{"raw_affiliation_string":"Department of Computer Science, University of Texas at San Antonio, San Antonio, Texas, United States of America","institution_ids":["https://openalex.org/I45438204"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103804186","display_name":"Chenyue W. Hu","orcid":null},"institutions":[{"id":"https://openalex.org/I74775410","display_name":"Rice University","ror":"https://ror.org/008zs3103","country_code":"US","type":"education","lineage":["https://openalex.org/I74775410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chenyue W. Hu","raw_affiliation_strings":["Department of Bioengineering, Rice University, Houston, Texas, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioengineering, Rice University, Houston, Texas, United States of America","institution_ids":["https://openalex.org/I74775410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039746522","display_name":"David T. Ryan","orcid":"https://orcid.org/0000-0002-1645-3624"},"institutions":[{"id":"https://openalex.org/I74775410","display_name":"Rice University","ror":"https://ror.org/008zs3103","country_code":"US","type":"education","lineage":["https://openalex.org/I74775410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David T. Ryan","raw_affiliation_strings":["Department of Bioengineering, Rice University, Houston, Texas, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioengineering, Rice University, Houston, Texas, United States of America","institution_ids":["https://openalex.org/I74775410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089262503","display_name":"Nicolas E. Grandel","orcid":"https://orcid.org/0000-0002-1264-5290"},"institutions":[{"id":"https://openalex.org/I74775410","display_name":"Rice University","ror":"https://ror.org/008zs3103","country_code":"US","type":"education","lineage":["https://openalex.org/I74775410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nicolas E. Grandel","raw_affiliation_strings":["Systems, Synthetic and Physical Biology Program, Rice University, Houston, Texas, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-1264-5290","affiliations":[{"raw_affiliation_string":"Systems, Synthetic and Physical Biology Program, Rice University, Houston, Texas, United States of America","institution_ids":["https://openalex.org/I74775410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002108446","display_name":"George Britton","orcid":"https://orcid.org/0000-0002-2783-4801"},"institutions":[{"id":"https://openalex.org/I74775410","display_name":"Rice University","ror":"https://ror.org/008zs3103","country_code":"US","type":"education","lineage":["https://openalex.org/I74775410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"George L. Britton","raw_affiliation_strings":["Systems, Synthetic and Physical Biology Program, Rice University, Houston, Texas, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Systems, Synthetic and Physical Biology Program, Rice University, Houston, Texas, United States of America","institution_ids":["https://openalex.org/I74775410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045992567","display_name":"Marisol Bustos","orcid":"https://orcid.org/0000-0001-8095-184X"},"institutions":[{"id":"https://openalex.org/I45438204","display_name":"The University of Texas at San Antonio","ror":"https://ror.org/01kd65564","country_code":"US","type":"education","lineage":["https://openalex.org/I45438204"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marisol Bustos","raw_affiliation_strings":["Department of Biomedical Engineering, University of Texas at San Antonio, San Antonio, Texas, United States of America"],"raw_orcid":"https://orcid.org/0000-0001-8095-184X","affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, University of Texas at San Antonio, San Antonio, Texas, United States of America","institution_ids":["https://openalex.org/I45438204"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081064466","display_name":"Maria A. Gonzalez Porras","orcid":"https://orcid.org/0000-0001-6594-8802"},"institutions":[{"id":"https://openalex.org/I45438204","display_name":"The University of Texas at San Antonio","ror":"https://ror.org/01kd65564","country_code":"US","type":"education","lineage":["https://openalex.org/I45438204"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Maria A. Gonzalez Porras","raw_affiliation_strings":["Department of Biomedical Engineering, University of Texas at San Antonio, San Antonio, Texas, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, University of Texas at San Antonio, San Antonio, Texas, United States of America","institution_ids":["https://openalex.org/I45438204"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065416142","display_name":"Katerina Stojkova","orcid":"https://orcid.org/0000-0002-9105-0892"},"institutions":[{"id":"https://openalex.org/I45438204","display_name":"The University of Texas at San Antonio","ror":"https://ror.org/01kd65564","country_code":"US","type":"education","lineage":["https://openalex.org/I45438204"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Katerina Stojkova","raw_affiliation_strings":["Department of Biomedical Engineering, University of Texas at San Antonio, San Antonio, Texas, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-9105-0892","affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, University of Texas at San Antonio, San Antonio, Texas, United States of America","institution_ids":["https://openalex.org/I45438204"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032503764","display_name":"Andrew Ligeralde","orcid":"https://orcid.org/0000-0002-4777-2847"},"institutions":[{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrew Ligeralde","raw_affiliation_strings":["Biophysics Graduate Program, University of California, Berkeley, California, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-4777-2847","affiliations":[{"raw_affiliation_string":"Biophysics Graduate Program, University of California, Berkeley, California, United States of America","institution_ids":["https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102319817","display_name":"Hyeonwi Son","orcid":null},"institutions":[{"id":"https://openalex.org/I165951966","display_name":"The University of Texas at San Antonio Health Science Center","ror":"https://ror.org/02f6dcw23","country_code":"US","type":"education","lineage":["https://openalex.org/I165951966","https://openalex.org/I45438204"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hyeonwi Son","raw_affiliation_strings":["Department of Oral & Maxillofacial Surgery, University of Texas Health Science Center at San Antonio, San Antonio, Texas, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Oral & Maxillofacial Surgery, University of Texas Health Science Center at San Antonio, San Antonio, Texas, United States of America","institution_ids":["https://openalex.org/I165951966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003695291","display_name":"John Shannonhouse","orcid":"https://orcid.org/0000-0002-2749-1140"},"institutions":[{"id":"https://openalex.org/I165951966","display_name":"The University of Texas at San Antonio Health Science Center","ror":"https://ror.org/02f6dcw23","country_code":"US","type":"education","lineage":["https://openalex.org/I165951966","https://openalex.org/I45438204"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John Shannonhouse","raw_affiliation_strings":["Department of Oral & Maxillofacial Surgery, University of Texas Health Science Center at San Antonio, San Antonio, Texas, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Oral & Maxillofacial Surgery, University of Texas Health Science Center at San Antonio, San Antonio, Texas, United States of America","institution_ids":["https://openalex.org/I165951966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090124580","display_name":"Jacob T. Robinson","orcid":"https://orcid.org/0000-0002-3509-3054"},"institutions":[{"id":"https://openalex.org/I74775410","display_name":"Rice University","ror":"https://ror.org/008zs3103","country_code":"US","type":"education","lineage":["https://openalex.org/I74775410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jacob T. Robinson","raw_affiliation_strings":["Department of Electrical and Computer Engineering, Rice University, Houston, Texas, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-3509-3054","affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Rice University, Houston, Texas, United States of America","institution_ids":["https://openalex.org/I74775410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022896439","display_name":"Aryeh Warmflash","orcid":"https://orcid.org/0000-0002-5679-2268"},"institutions":[{"id":"https://openalex.org/I74775410","display_name":"Rice University","ror":"https://ror.org/008zs3103","country_code":"US","type":"education","lineage":["https://openalex.org/I74775410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Aryeh Warmflash","raw_affiliation_strings":["Department of Biosciences, Rice University, Houston, Texas, United States of America","Systems, Synthetic and Physical Biology Program, Rice University, Houston, Texas, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-5679-2268","affiliations":[{"raw_affiliation_string":"Department of Biosciences, Rice University, Houston, Texas, United States of America","institution_ids":["https://openalex.org/I74775410"]},{"raw_affiliation_string":"Systems, Synthetic and Physical Biology Program, Rice University, Houston, Texas, United States of America","institution_ids":["https://openalex.org/I74775410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070625855","display_name":"Eric M. Brey","orcid":"https://orcid.org/0000-0001-8766-7390"},"institutions":[{"id":"https://openalex.org/I4210092984","display_name":"Urology San Antonio","ror":"https://ror.org/00fff9d21","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210092984"]},{"id":"https://openalex.org/I45438204","display_name":"The University of Texas at San Antonio","ror":"https://ror.org/01kd65564","country_code":"US","type":"education","lineage":["https://openalex.org/I45438204"]},{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eric M. Brey","raw_affiliation_strings":["Department of Biomedical Engineering, University of Texas at San Antonio, San Antonio, Texas, United States of America","UTSA-UT Health Joint Graduate Group in Biomedical Engineering, San Antonio, Texas, United States of America","UTSA\u2013UT Health Joint Graduate Group in Biomedical Engineering, San Antonio, Texas, United States of America"],"raw_orcid":"https://orcid.org/0000-0001-8766-7390","affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, University of Texas at San Antonio, San Antonio, Texas, United States of America","institution_ids":["https://openalex.org/I45438204"]},{"raw_affiliation_string":"UTSA-UT Health Joint Graduate Group in Biomedical Engineering, San Antonio, Texas, United States of America","institution_ids":["https://openalex.org/I4210092984"]},{"raw_affiliation_string":"UTSA\u2013UT Health Joint Graduate Group in Biomedical Engineering, San Antonio, Texas, United States of America","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045921211","display_name":"Yu Shin Kim","orcid":"https://orcid.org/0000-0002-6677-5656"},"institutions":[{"id":"https://openalex.org/I165951966","display_name":"The University of Texas at San Antonio Health Science Center","ror":"https://ror.org/02f6dcw23","country_code":"US","type":"education","lineage":["https://openalex.org/I165951966","https://openalex.org/I45438204"]},{"id":"https://openalex.org/I4210092984","display_name":"Urology San Antonio","ror":"https://ror.org/00fff9d21","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210092984"]},{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yu Shin Kim","raw_affiliation_strings":["Department of Oral & Maxillofacial Surgery, University of Texas Health Science Center at San Antonio, San Antonio, Texas, United States of America","Programs in Integrated Biomedical Sciences, Translational Sciences, Radiological Sciences, University of Texas Health Science Center at San Antonio, San Antonio, Texas, United States of America","UTSA-UT Health Joint Graduate Group in Biomedical Engineering, San Antonio, Texas, United States of America","UTSA\u2013UT Health Joint Graduate Group in Biomedical Engineering, San Antonio, Texas, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-6677-5656","affiliations":[{"raw_affiliation_string":"Department of Oral & Maxillofacial Surgery, University of Texas Health Science Center at San Antonio, San Antonio, Texas, United States of America","institution_ids":["https://openalex.org/I165951966"]},{"raw_affiliation_string":"Programs in Integrated Biomedical Sciences, Translational Sciences, Radiological Sciences, University of Texas Health Science Center at San Antonio, San Antonio, Texas, United States of America","institution_ids":["https://openalex.org/I165951966"]},{"raw_affiliation_string":"UTSA-UT Health Joint Graduate Group in Biomedical Engineering, San Antonio, Texas, United States of America","institution_ids":["https://openalex.org/I4210092984"]},{"raw_affiliation_string":"UTSA\u2013UT Health Joint Graduate Group in Biomedical Engineering, San Antonio, Texas, United States of America","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016201799","display_name":"Amina A. Qutub","orcid":"https://orcid.org/0000-0003-1737-9208"},"institutions":[{"id":"https://openalex.org/I4210092984","display_name":"Urology San Antonio","ror":"https://ror.org/00fff9d21","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210092984"]},{"id":"https://openalex.org/I4210158408","display_name":"Matrix Research (United States)","ror":"https://ror.org/04mw0p229","country_code":"US","type":"company","lineage":["https://openalex.org/I4210158408"]},{"id":"https://openalex.org/I45438204","display_name":"The University of Texas at San Antonio","ror":"https://ror.org/01kd65564","country_code":"US","type":"education","lineage":["https://openalex.org/I45438204"]},{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Amina A. Qutub","raw_affiliation_strings":["Department of Biomedical Engineering, University of Texas at San Antonio, San Antonio, Texas, United States of America","UTSA AI MATRIX Consortium, San Antonio, Texas, United States of America","UTSA-UT Health Joint Graduate Group in Biomedical Engineering, San Antonio, Texas, United States of America","UTSA\u2013UT Health Joint Graduate Group in Biomedical Engineering, San Antonio, Texas, United States of America"],"raw_orcid":"https://orcid.org/0000-0003-1737-9208","affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, University of Texas at San Antonio, San Antonio, Texas, United States of America","institution_ids":["https://openalex.org/I45438204"]},{"raw_affiliation_string":"UTSA AI MATRIX Consortium, San Antonio, Texas, United States of America","institution_ids":["https://openalex.org/I4210158408"]},{"raw_affiliation_string":"UTSA-UT Health Joint Graduate Group in Biomedical Engineering, San Antonio, Texas, United States of America","institution_ids":["https://openalex.org/I4210092984"]},{"raw_affiliation_string":"UTSA\u2013UT Health Joint Graduate Group in Biomedical Engineering, San Antonio, Texas, United States of America","institution_ids":["https://openalex.org/I919571938"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5016201799"],"corresponding_institution_ids":["https://openalex.org/I4210092984","https://openalex.org/I4210158408","https://openalex.org/I45438204","https://openalex.org/I919571938"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":2.8554,"has_fulltext":true,"cited_by_count":14,"citation_normalized_percentile":{"value":0.90272556,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"18","issue":"6","first_page":"e1009846","last_page":"e1009846"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.9873999953269958,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9865999817848206,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/multicellular-organism","display_name":"Multicellular organism","score":0.7749749422073364},{"id":"https://openalex.org/keywords/cell","display_name":"Cell","score":0.4639318585395813},{"id":"https://openalex.org/keywords/network-analysis","display_name":"Network analysis","score":0.43935149908065796},{"id":"https://openalex.org/keywords/niche","display_name":"Niche","score":0.42658936977386475},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4192759394645691},{"id":"https://openalex.org/keywords/network-dynamics","display_name":"Network dynamics","score":0.41417649388313293},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4107632040977478},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.18906372785568237}],"concepts":[{"id":"https://openalex.org/C74318829","wikidata":"https://www.wikidata.org/wiki/Q36458","display_name":"Multicellular organism","level":3,"score":0.7749749422073364},{"id":"https://openalex.org/C1491633281","wikidata":"https://www.wikidata.org/wiki/Q7868","display_name":"Cell","level":2,"score":0.4639318585395813},{"id":"https://openalex.org/C32946077","wikidata":"https://www.wikidata.org/wiki/Q618079","display_name":"Network analysis","level":2,"score":0.43935149908065796},{"id":"https://openalex.org/C153991713","wikidata":"https://www.wikidata.org/wiki/Q17142856","display_name":"Niche","level":2,"score":0.42658936977386475},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4192759394645691},{"id":"https://openalex.org/C123757187","wikidata":"https://www.wikidata.org/wiki/Q9195957","display_name":"Network dynamics","level":2,"score":0.41417649388313293},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4107632040977478},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.18906372785568237},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C118615104","wikidata":"https://www.wikidata.org/wiki/Q121416","display_name":"Discrete mathematics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058953","descriptor_name":"Neural Stem Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058953","descriptor_name":"Neural Stem Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058953","descriptor_name":"Neural Stem Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058953","descriptor_name":"Neural Stem Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062211","descriptor_name":"Spatio-Temporal Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062211","descriptor_name":"Spatio-Temporal Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062211","descriptor_name":"Spatio-Temporal Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062211","descriptor_name":"Spatio-Temporal Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1371/journal.pcbi.1009846","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1009846","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1009846&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:35696439","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35696439","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:doaj.org/article:68be8c3e4b864f43830fbc95545cafd3","is_oa":true,"landing_page_url":"https://doaj.org/article/68be8c3e4b864f43830fbc95545cafd3","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 18, Iss 6, p e1009846 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9191702","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9191702","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1009846","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1009846","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1009846&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","score":0.7300000190734863,"id":"https://metadata.un.org/sdg/15"}],"awards":[{"id":"https://openalex.org/G2080761228","display_name":null,"funder_award_id":"T34 GM145507","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G2108925773","display_name":null,"funder_award_id":"T34GM007717","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G2875689312","display_name":null,"funder_award_id":"1533708","funder_id":"https://openalex.org/F4320335353","funder_display_name":"National Science Foundation of Sri Lanka"},{"id":"https://openalex.org/G2901209750","display_name":null,"funder_award_id":"1553228","funder_id":"https://openalex.org/F4320335353","funder_display_name":"National Science Foundation of Sri Lanka"},{"id":"https://openalex.org/G3190990280","display_name":null,"funder_award_id":"RR140073","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3423148522","display_name":"CAREER: Virtual, high-throughput model of brain microvasculature regeneration","funder_award_id":"1150645","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3452232429","display_name":"Recruitment of First-Time, Tenure-Track Faculty Members","funder_award_id":"RR140073","funder_id":"https://openalex.org/F4320308129","funder_display_name":"Cancer Prevention and Research Institute of Texas"},{"id":"https://openalex.org/G38045097","display_name":"Coupling activation of primary sensory neurons as a novel plasticity mechanism for chronic pain","funder_award_id":"5r01de026677-06","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3844766460","display_name":null,"funder_award_id":"R01DE031477","funder_id":"https://openalex.org/F4320337365","funder_display_name":"National Institute of Dental and Craniofacial Research"},{"id":"https://openalex.org/G4225369182","display_name":null,"funder_award_id":"1150645","funder_id":"https://openalex.org/F4320335353","funder_display_name":"National Science Foundation of Sri Lanka"},{"id":"https://openalex.org/G5709510619","display_name":null,"funder_award_id":"1250104","funder_id":"https://openalex.org/F4320335353","funder_display_name":"National Science Foundation of Sri Lanka"},{"id":"https://openalex.org/G6057295908","display_name":"CAREER: Understanding human embryonic development from the bottom up","funder_award_id":"1553228","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G614565350","display_name":"Functional peripheral and central vagal neural circuits of interoception inhibiting pain","funder_award_id":"1r01de031477-01","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6856914370","display_name":"IGERT: Neuroengineering from Cells to Systems","funder_award_id":"1250104","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7116091636","display_name":null,"funder_award_id":"R01 DE026677","funder_id":"https://openalex.org/F4320337365","funder_display_name":"National Institute of Dental and Craniofacial Research"},{"id":"https://openalex.org/G8312085847","display_name":"NCS-FO: Identifying Design Principles of Neural Cells","funder_award_id":"1533708","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320308129","display_name":"Cancer Prevention and Research Institute of Texas","ror":"https://ror.org/0003xa228"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320335353","display_name":"National Science Foundation of Sri Lanka","ror":"https://ror.org/010xaa060"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337365","display_name":"National Institute of Dental and Craniofacial Research","ror":"https://ror.org/004a2wv92"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4282833060.pdf","grobid_xml":"https://content.openalex.org/works/W4282833060.grobid-xml"},"referenced_works_count":73,"referenced_works":["https://openalex.org/W1569142197","https://openalex.org/W1974683325","https://openalex.org/W1981276731","https://openalex.org/W1986408320","https://openalex.org/W1993355218","https://openalex.org/W1996435746","https://openalex.org/W1998752664","https://openalex.org/W2012049188","https://openalex.org/W2020606062","https://openalex.org/W2037732552","https://openalex.org/W2040956707","https://openalex.org/W2063939463","https://openalex.org/W2072966096","https://openalex.org/W2073035767","https://openalex.org/W2107554012","https://openalex.org/W2118263629","https://openalex.org/W2126956247","https://openalex.org/W2129574021","https://openalex.org/W2139512539","https://openalex.org/W2147522285","https://openalex.org/W2158900785","https://openalex.org/W2240255230","https://openalex.org/W2330595735","https://openalex.org/W2360131028","https://openalex.org/W2397643408","https://openalex.org/W2400828340","https://openalex.org/W2420732992","https://openalex.org/W2469581795","https://openalex.org/W2511823098","https://openalex.org/W2545578382","https://openalex.org/W2549729005","https://openalex.org/W2565076790","https://openalex.org/W2606211344","https://openalex.org/W2613629789","https://openalex.org/W2622256805","https://openalex.org/W2732612903","https://openalex.org/W2734545316","https://openalex.org/W2743344672","https://openalex.org/W2755800871","https://openalex.org/W2786313597","https://openalex.org/W2790675139","https://openalex.org/W2795314247","https://openalex.org/W2797269558","https://openalex.org/W2805271873","https://openalex.org/W2833620410","https://openalex.org/W2887091285","https://openalex.org/W2896802510","https://openalex.org/W2903712864","https://openalex.org/W2923300855","https://openalex.org/W2950569309","https://openalex.org/W2952986861","https://openalex.org/W2953036966","https://openalex.org/W2954606077","https://openalex.org/W2963621587","https://openalex.org/W2972983657","https://openalex.org/W2975634117","https://openalex.org/W2996993657","https://openalex.org/W2998148140","https://openalex.org/W3005957343","https://openalex.org/W3017023874","https://openalex.org/W3022215132","https://openalex.org/W3025414101","https://openalex.org/W3036252879","https://openalex.org/W3047081808","https://openalex.org/W3084513838","https://openalex.org/W3122308234","https://openalex.org/W3123143859","https://openalex.org/W3135666525","https://openalex.org/W4211091012","https://openalex.org/W4280598306","https://openalex.org/W4301498867","https://openalex.org/W6738012370","https://openalex.org/W7063556251"],"related_works":["https://openalex.org/W2522472446","https://openalex.org/W1963836821","https://openalex.org/W2145740829","https://openalex.org/W4281994149","https://openalex.org/W2166797439","https://openalex.org/W2805325890","https://openalex.org/W4247350725","https://openalex.org/W2132267912","https://openalex.org/W4387161370","https://openalex.org/W2476390134"],"abstract_inverted_index":{"We":[0,46],"introduce":[1],"cytoNet,":[2],"a":[3,117,122],"cloud-based":[4,133],"tool":[5],"to":[6,108,121,143],"characterize":[7],"cell":[8,21,44,62,80,84,114],"populations":[9],"from":[10],"microscopy":[11],"images.":[12],"cytoNet":[13,34,136],"quantifies":[14],"spatial":[15],"topology":[16],"and":[17,86],"functional":[18],"relationships":[19],"in":[20,50,73,97,116],"communities":[22,63,69,115],"using":[23],"principles":[24],"of":[25,39,59,70,79,91,112,125,135],"network":[26],"science.":[27],"Capturing":[28],"multicellular":[29],"dynamics":[30,58,111],"through":[31],"graph":[32],"features,":[33],"also":[35],"evaluates":[36],"the":[37,56,77,89,110,138],"effect":[38,78,90],"cell-cell":[40],"interactions":[41],"on":[42,82,94,128],"individual":[43],"phenotypes.":[45],"demonstrate":[47],"cytoNet's":[48],"capabilities":[49],"four":[51],"case":[52],"studies:":[53],"1)":[54],"characterizing":[55],"temporal":[57],"neural":[60,65],"progenitor":[61],"during":[64],"differentiation,":[66],"2)":[67],"identifying":[68],"pain-sensing":[71],"neurons":[72],"vivo,":[74],"3)":[75],"capturing":[76],"community":[81],"endothelial":[83],"morphology,":[85],"4)":[87],"investigating":[88],"laminin":[92],"\u03b14":[93],"perivascular":[95],"niches":[96],"adipose":[98],"tissue.":[99],"The":[100,131],"analytical":[101],"framework":[102,141],"introduced":[103],"here":[104],"can":[105],"be":[106],"used":[107],"study":[109],"complex":[113],"quantitative":[118],"manner,":[119],"leading":[120],"deeper":[123],"understanding":[124],"environmental":[126],"effects":[127],"cellular":[129],"behavior.":[130],"versatile,":[132],"format":[134],"makes":[137],"image":[139],"analysis":[140],"accessible":[142],"researchers":[144],"across":[145],"domains.":[146]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2020,"cited_by_count":1}],"updated_date":"2026-08-06T08:24:18.245995","created_date":"2025-10-10T00:00:00"}
