{"id":"https://openalex.org/W4210457512","doi":"https://doi.org/10.1371/journal.pcbi.1009838","title":"Evaluating supervised and unsupervised background noise correction in human gut microbiome data","display_name":"Evaluating supervised and unsupervised background noise correction in human gut microbiome data","publication_year":2022,"publication_date":"2022-02-07","ids":{"openalex":"https://openalex.org/W4210457512","doi":"https://doi.org/10.1371/journal.pcbi.1009838","pmid":"https://pubmed.ncbi.nlm.nih.gov/35130266"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1009838","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1009838","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1009838&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1009838&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5023267535","display_name":"Leah Briscoe","orcid":"https://orcid.org/0000-0001-5827-5013"},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Leah Briscoe","raw_affiliation_strings":["Bioinformatics Interdepartmental Program, University of California Los Angeles, Los Angeles, California, United States of America"],"raw_orcid":"https://orcid.org/0000-0001-5827-5013","affiliations":[{"raw_affiliation_string":"Bioinformatics Interdepartmental Program, University of California Los Angeles, Los Angeles, California, United States of America","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036743041","display_name":"Brunilda Balliu","orcid":"https://orcid.org/0000-0001-8953-804X"},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brunilda Balliu","raw_affiliation_strings":["Department of Computational Medicine, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, California, United States of America"],"raw_orcid":"https://orcid.org/0000-0001-8953-804X","affiliations":[{"raw_affiliation_string":"Department of Computational Medicine, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, California, United States of America","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049741676","display_name":"Sriram Sankararaman","orcid":"https://orcid.org/0000-0003-1586-9641"},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sriram Sankararaman","raw_affiliation_strings":["Department of Computational Medicine, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, California, United States of America","Department of Computer Science, University of California Los Angeles, Los Angeles, California, United States of America","Department of Human Genetics, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, California, United States of America"],"raw_orcid":"https://orcid.org/0000-0003-1586-9641","affiliations":[{"raw_affiliation_string":"Department of Computational Medicine, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, California, United States of America","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Department of Computer Science, University of California Los Angeles, Los Angeles, California, United States of America","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Department of Human Genetics, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, California, United States of America","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050273239","display_name":"Eran Halperin","orcid":"https://orcid.org/0000-0002-2373-3691"},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]},{"id":"https://openalex.org/I4210151738","display_name":"Precision Research (United States)","ror":"https://ror.org/04y784b90","country_code":"US","type":"company","lineage":["https://openalex.org/I4210151738"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Eran Halperin","raw_affiliation_strings":["Department of Anesthesiology and Perioperative Medicine, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, California, United States of America","Department of Computational Medicine, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, California, United States of America","Department of Computer Science, University of California Los Angeles, Los Angeles, California, United States of America","Department of Human Genetics, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, California, United States of America","Institute of Precision Health, University of California Los Angeles, Los Angeles, California, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-2373-3691","affiliations":[{"raw_affiliation_string":"Department of Anesthesiology and Perioperative Medicine, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, California, United States of America","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Department of Computational Medicine, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, California, United States of America","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Department of Computer Science, University of California Los Angeles, Los Angeles, California, United States of America","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Department of Human Genetics, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, California, United States of America","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Institute of Precision Health, University of California Los Angeles, Los Angeles, California, United States of America","institution_ids":["https://openalex.org/I4210151738","https://openalex.org/I161318765"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002754071","display_name":"Nandita R. Garud","orcid":"https://orcid.org/0000-0003-4217-4407"},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Nandita R. Garud","raw_affiliation_strings":["Department of Ecology and Evolutionary Biology, University of California Los Angeles, Los Angeles, California, United States of America","Department of Human Genetics, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, California, United States of America"],"raw_orcid":"https://orcid.org/0000-0003-4217-4407","affiliations":[{"raw_affiliation_string":"Department of Ecology and Evolutionary Biology, University of California Los Angeles, Los Angeles, California, United States of America","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Department of Human Genetics, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, California, United States of America","institution_ids":["https://openalex.org/I161318765"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5002754071","https://openalex.org/A5023267535","https://openalex.org/A5050273239"],"corresponding_institution_ids":["https://openalex.org/I161318765","https://openalex.org/I4210151738"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":0.9548,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.72252652,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":"18","issue":"2","first_page":"e1009838","last_page":"e1009838"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9839000105857849,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.958299994468689,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.7877174615859985},{"id":"https://openalex.org/keywords/microbiome","display_name":"Microbiome","score":0.7807263135910034},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.653469443321228},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5659663081169128},{"id":"https://openalex.org/keywords/human-microbiome-project","display_name":"Human Microbiome Project","score":0.5485015511512756},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5441986918449402},{"id":"https://openalex.org/keywords/principal-component-analysis","display_name":"Principal component analysis","score":0.5297635197639465},{"id":"https://openalex.org/keywords/human-microbiome","display_name":"Human microbiome","score":0.5278196930885315},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5047377347946167},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.42653992772102356},{"id":"https://openalex.org/keywords/unsupervised-learning","display_name":"Unsupervised learning","score":0.41659867763519287},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3660166263580322},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.30808025598526},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.10501214861869812}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.7877174615859985},{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.7807263135910034},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.653469443321228},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5659663081169128},{"id":"https://openalex.org/C190944805","wikidata":"https://www.wikidata.org/wiki/Q3922751","display_name":"Human Microbiome Project","level":4,"score":0.5485015511512756},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5441986918449402},{"id":"https://openalex.org/C27438332","wikidata":"https://www.wikidata.org/wiki/Q2873","display_name":"Principal component analysis","level":2,"score":0.5297635197639465},{"id":"https://openalex.org/C91478284","wikidata":"https://www.wikidata.org/wiki/Q6623796","display_name":"Human microbiome","level":3,"score":0.5278196930885315},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5047377347946167},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.42653992772102356},{"id":"https://openalex.org/C8038995","wikidata":"https://www.wikidata.org/wiki/Q1152135","display_name":"Unsupervised learning","level":2,"score":0.41659867763519287},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3660166263580322},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.30808025598526},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10501214861869812},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1371/journal.pcbi.1009838","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1009838","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1009838&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:35130266","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35130266","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:ark:/13030/qt316700pp","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:RePEc:plo:pcbi00:1009838","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1009838","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:4aa11c9ae3894f5c88dfa44c3c20f3b1","is_oa":true,"landing_page_url":"https://doaj.org/article/4aa11c9ae3894f5c88dfa44c3c20f3b1","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 18, Iss 2, p e1009838 (2022)","raw_type":"article"},{"id":"pmh:oai:escholarship.org:ark:/13030/qt316700pp","is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/316700pp","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLOS Computational Biology, vol 18, iss 2","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8853548","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8853548","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1009838","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1009838","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1009838&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1186668200","display_name":null,"funder_award_id":"1705197","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G2230317254","display_name":null,"funder_award_id":"R35GM125055","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3336518514","display_name":null,"funder_award_id":"DGE-2034835","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G441755652","display_name":null,"funder_award_id":"2034835","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4675033123","display_name":null,"funder_award_id":"HG012079","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5582914507","display_name":null,"funder_award_id":"1705197","funder_id":"https://openalex.org/F4320335353","funder_display_name":"National Science Foundation of Sri Lanka"},{"id":"https://openalex.org/G6014353401","display_name":null,"funder_award_id":"NHGRI 5R01HG010505","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6392357692","display_name":null,"funder_award_id":"III-1750121","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8218921012","display_name":null,"funder_award_id":"1650604","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306216","display_name":"Paul G. Allen Family Foundation","ror":"https://ror.org/01degd278"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320335353","display_name":"National Science Foundation of Sri Lanka","ror":"https://ror.org/010xaa060"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4210457512.pdf","grobid_xml":"https://content.openalex.org/works/W4210457512.grobid-xml"},"referenced_works_count":104,"referenced_works":["https://openalex.org/W374884248","https://openalex.org/W571770348","https://openalex.org/W755741475","https://openalex.org/W1513838499","https://openalex.org/W1703384511","https://openalex.org/W1791491556","https://openalex.org/W1948774627","https://openalex.org/W1964027278","https://openalex.org/W1971415551","https://openalex.org/W1978709058","https://openalex.org/W1996370379","https://openalex.org/W1999296654","https://openalex.org/W2009588715","https://openalex.org/W2023918737","https://openalex.org/W2033136694","https://openalex.org/W2070879762","https://openalex.org/W2073332363","https://openalex.org/W2077088073","https://openalex.org/W2096128575","https://openalex.org/W2096604969","https://openalex.org/W2100096695","https://openalex.org/W2101234009","https://openalex.org/W2103181374","https://openalex.org/W2107665951","https://openalex.org/W2113925621","https://openalex.org/W2114104545","https://openalex.org/W2123943890","https://openalex.org/W2125826054","https://openalex.org/W2130725058","https://openalex.org/W2133148918","https://openalex.org/W2137499573","https://openalex.org/W2146512944","https://openalex.org/W2149371789","https://openalex.org/W2150542002","https://openalex.org/W2153931548","https://openalex.org/W2156975150","https://openalex.org/W2178425989","https://openalex.org/W2179438025","https://openalex.org/W2214747519","https://openalex.org/W2239696860","https://openalex.org/W2242390630","https://openalex.org/W2288960999","https://openalex.org/W2308510044","https://openalex.org/W2309685155","https://openalex.org/W2314413252","https://openalex.org/W2328023807","https://openalex.org/W2347104163","https://openalex.org/W2377027462","https://openalex.org/W2463312000","https://openalex.org/W2473355215","https://openalex.org/W2489434123","https://openalex.org/W2508175702","https://openalex.org/W2509730012","https://openalex.org/W2529108608","https://openalex.org/W2591590445","https://openalex.org/W2611418622","https://openalex.org/W2611957242","https://openalex.org/W2622073354","https://openalex.org/W2751013971","https://openalex.org/W2762425175","https://openalex.org/W2763540102","https://openalex.org/W2767984705","https://openalex.org/W2768511889","https://openalex.org/W2769486068","https://openalex.org/W2769542288","https://openalex.org/W2771045365","https://openalex.org/W2786335128","https://openalex.org/W2794407684","https://openalex.org/W2892875286","https://openalex.org/W2914348147","https://openalex.org/W2921815890","https://openalex.org/W2921872958","https://openalex.org/W2927453907","https://openalex.org/W2932049125","https://openalex.org/W2949660875","https://openalex.org/W2950445893","https://openalex.org/W2950868848","https://openalex.org/W2952240264","https://openalex.org/W2952557828","https://openalex.org/W2962733802","https://openalex.org/W2971815815","https://openalex.org/W2972720814","https://openalex.org/W2988925098","https://openalex.org/W2990248540","https://openalex.org/W2991615383","https://openalex.org/W3005807176","https://openalex.org/W3010810358","https://openalex.org/W3010965312","https://openalex.org/W3022162007","https://openalex.org/W3025053000","https://openalex.org/W3095837412","https://openalex.org/W3097338697","https://openalex.org/W3102250279","https://openalex.org/W3118724893","https://openalex.org/W3154437000","https://openalex.org/W3163631751","https://openalex.org/W3171259862","https://openalex.org/W3171380437","https://openalex.org/W3203034578","https://openalex.org/W3206629621","https://openalex.org/W3206879704","https://openalex.org/W4242622626","https://openalex.org/W6675354045","https://openalex.org/W6770806356"],"related_works":["https://openalex.org/W1968369492","https://openalex.org/W2043102924","https://openalex.org/W2995607319","https://openalex.org/W2391004329","https://openalex.org/W2315403509","https://openalex.org/W1222064643","https://openalex.org/W2624135745","https://openalex.org/W2291217197","https://openalex.org/W1542636957","https://openalex.org/W3139084279"],"abstract_inverted_index":{"The":[0],"ability":[1,127,175],"to":[2,34,48,58,74,104,159,162,193,206,214],"predict":[3,49],"human":[4],"phenotypes":[5],"and":[6,51,68,118,224],"identify":[7],"biomarkers":[8,53,181],"of":[9,19,37,54,88,110,125,128,180,190,197,217],"disease":[10],"from":[11],"metagenomic":[12,25,226],"data":[13,26,76,161],"is":[14,27,114,148],"crucial":[15],"for":[16,21,60,65,85,237],"the":[17,35,107,126,167,183,187,195,215,220],"development":[18],"therapeutics":[20],"microbiome-associated":[22],"diseases.":[23],"However,":[24,200],"commonly":[28,72],"affected":[29],"by":[30],"technical":[31,211],"variables":[32,212],"unrelated":[33],"phenotype":[36,50],"interest,":[38],"such":[39],"as":[40,138,140,182],"sequencing":[41],"protocol,":[42],"which":[43,113],"can":[44],"make":[45],"it":[46,204],"difficult":[47],"find":[52,165],"disease.":[55],"Supervised":[56],"methods":[57,97,137],"correct":[59],"background":[61,231],"noise,":[62],"originally":[63],"designed":[64],"gene":[66],"expression":[67],"RNA-seq":[69],"data,":[70,112],"are":[71,98,102],"applied":[73,158],"microbiome":[75,111,160,240],"but":[77,95,154],"may":[78],"be":[79],"limited":[80,99],"because":[81,100],"they":[82,101],"cannot":[83],"account":[84],"unmeasured":[86],"sources":[87,196],"variation.":[89],"Unsupervised":[90],"approaches":[91],"address":[92],"this":[93],"issue,":[94],"current":[96],"ill-equipped":[103],"deal":[105],"with":[106,134,186],"unique":[108],"aspects":[109],"compositional,":[115],"highly":[116],"skewed,":[117],"sparse.":[119],"We":[120,164],"perform":[121],"a":[122],"comparative":[123],"analysis":[124],"different":[129],"denoising":[130],"transformations":[131],"in":[132,151,176,201,219],"combination":[133],"supervised":[135,184],"correction":[136,145,171,233],"well":[139],"an":[141],"unsupervised":[142,168],"principal":[143,169],"component":[144,170],"approach":[146,172],"that":[147,166],"presently":[149],"used":[150],"other":[152],"domains":[153],"has":[155,173],"not":[156,191],"been":[157],"date.":[163],"comparable":[174],"reducing":[177],"false":[178],"discovery":[179],"approaches,":[185],"added":[188],"benefit":[189],"needing":[192],"know":[194],"variation":[198],"apriori.":[199],"prediction":[202,209],"tasks,":[203],"appears":[205],"only":[207],"improve":[208],"when":[210],"contribute":[213],"majority":[216],"variance":[218],"data.":[221],"As":[222],"new":[223],"larger":[225],"datasets":[227],"become":[228,235],"increasingly":[229],"available,":[230],"noise":[232],"will":[234],"essential":[236],"generating":[238],"reproducible":[239],"analyses.":[241]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":4}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
