{"id":"https://openalex.org/W4206646869","doi":"https://doi.org/10.1371/journal.pcbi.1009804","title":"Extended ensemble simulations of a SARS-CoV-2 nsp1\u20135\u2019-UTR complex","display_name":"Extended ensemble simulations of a SARS-CoV-2 nsp1\u20135\u2019-UTR complex","publication_year":2022,"publication_date":"2022-01-19","ids":{"openalex":"https://openalex.org/W4206646869","doi":"https://doi.org/10.1371/journal.pcbi.1009804","pmid":"https://pubmed.ncbi.nlm.nih.gov/35045069"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1009804","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1009804","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1371/journal.pcbi.1009804","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5052772145","display_name":"Shun Sakuraba","orcid":"https://orcid.org/0000-0001-5768-2389"},"institutions":[{"id":"https://openalex.org/I4210114217","display_name":"National Institutes for Quantum Science and Technology","ror":"https://ror.org/020rbyg91","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210114217"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Shun Sakuraba","raw_affiliation_strings":["Institute for Quantum Life Science, National Institutes for Quantum Science and Technology, Kizugawa, Japan"],"raw_orcid":"https://orcid.org/0000-0001-5768-2389","affiliations":[{"raw_affiliation_string":"Institute for Quantum Life Science, National Institutes for Quantum Science and Technology, Kizugawa, Japan","institution_ids":["https://openalex.org/I4210114217"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100556212","display_name":"Qilin Xie","orcid":null},"institutions":[{"id":"https://openalex.org/I135768898","display_name":"Ritsumeikan University","ror":"https://ror.org/0197nmd03","country_code":"JP","type":"education","lineage":["https://openalex.org/I135768898","https://openalex.org/I4390039241"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Qilin Xie","raw_affiliation_strings":["Graduate School of Life Sciences, Ritsumeikan University, Kusatsu, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Graduate School of Life Sciences, Ritsumeikan University, Kusatsu, Japan","institution_ids":["https://openalex.org/I135768898"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042029425","display_name":"Kota Kasahara","orcid":"https://orcid.org/0000-0003-0207-6271"},"institutions":[{"id":"https://openalex.org/I135768898","display_name":"Ritsumeikan University","ror":"https://ror.org/0197nmd03","country_code":"JP","type":"education","lineage":["https://openalex.org/I135768898","https://openalex.org/I4390039241"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Kota Kasahara","raw_affiliation_strings":["College of Life Sciences, Ritsumeikan University, Kusatsu, Japan"],"raw_orcid":"https://orcid.org/0000-0003-0207-6271","affiliations":[{"raw_affiliation_string":"College of Life Sciences, Ritsumeikan University, Kusatsu, Japan","institution_ids":["https://openalex.org/I135768898"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090881567","display_name":"Junichi Iwakiri","orcid":"https://orcid.org/0000-0002-4611-2142"},"institutions":[{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Junichi Iwakiri","raw_affiliation_strings":["Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Japan"],"raw_orcid":"https://orcid.org/0000-0002-4611-2142","affiliations":[{"raw_affiliation_string":"Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Japan","institution_ids":["https://openalex.org/I74801974"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5080123389","display_name":"Hidetoshi Kono","orcid":"https://orcid.org/0000-0001-5729-8707"},"institutions":[{"id":"https://openalex.org/I4210114217","display_name":"National Institutes for Quantum Science and Technology","ror":"https://ror.org/020rbyg91","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210114217"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Hidetoshi Kono","raw_affiliation_strings":["Institute for Quantum Life Science, National Institutes for Quantum Science and Technology, Kizugawa, Japan"],"raw_orcid":"https://orcid.org/0000-0001-5729-8707","affiliations":[{"raw_affiliation_string":"Institute for Quantum Life Science, National Institutes for Quantum Science and Technology, Kizugawa, Japan","institution_ids":["https://openalex.org/I4210114217"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5052772145"],"corresponding_institution_ids":["https://openalex.org/I4210114217"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":0.6944,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.65615757,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"18","issue":"1","first_page":"e1009804","last_page":"e1009804"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12381","display_name":"Electron Spin Resonance Studies","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11177","display_name":"Spectroscopy and Quantum Chemical Studies","score":0.9900000095367432,"subfield":{"id":"https://openalex.org/subfields/3107","display_name":"Atomic and Molecular Physics, and Optics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/severe-acute-respiratory-syndrome-coronavirus-2","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","score":0.6537408828735352},{"id":"https://openalex.org/keywords/coronavirus-disease-2019","display_name":"Coronavirus disease 2019 (COVID-19)","score":0.551188051700592},{"id":"https://openalex.org/keywords/2019-20-coronavirus-outbreak","display_name":"2019-20 coronavirus outbreak","score":0.5192632675170898},{"id":"https://openalex.org/keywords/sars-virus","display_name":"Sars virus","score":0.5115405321121216},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.45735281705856323},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.39264267683029175},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3615001440048218},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.34300875663757324},{"id":"https://openalex.org/keywords/statistical-physics","display_name":"Statistical physics","score":0.3298962414264679},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.23807746171951294},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.16999968886375427}],"concepts":[{"id":"https://openalex.org/C3007834351","wikidata":"https://www.wikidata.org/wiki/Q82069695","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","level":5,"score":0.6537408828735352},{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.551188051700592},{"id":"https://openalex.org/C3006700255","wikidata":"https://www.wikidata.org/wiki/Q81068910","display_name":"2019-20 coronavirus outbreak","level":3,"score":0.5192632675170898},{"id":"https://openalex.org/C3020799909","wikidata":"https://www.wikidata.org/wiki/Q85438966","display_name":"Sars virus","level":5,"score":0.5115405321121216},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.45735281705856323},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.39264267683029175},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3615001440048218},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.34300875663757324},{"id":"https://openalex.org/C121864883","wikidata":"https://www.wikidata.org/wiki/Q677916","display_name":"Statistical physics","level":1,"score":0.3298962414264679},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.23807746171951294},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.16999968886375427},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.0},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.0},{"id":"https://openalex.org/C116675565","wikidata":"https://www.wikidata.org/wiki/Q3241045","display_name":"Outbreak","level":2,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014176","descriptor_name":"Protein Biosynthesis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014176","descriptor_name":"Protein Biosynthesis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014176","descriptor_name":"Protein Biosynthesis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017361","descriptor_name":"Viral Nonstructural Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D017361","descriptor_name":"Viral Nonstructural Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D017361","descriptor_name":"Viral Nonstructural Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D017361","descriptor_name":"Viral Nonstructural Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D017361","descriptor_name":"Viral Nonstructural Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D017361","descriptor_name":"Viral Nonstructural Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D017361","descriptor_name":"Viral Nonstructural Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D017361","descriptor_name":"Viral Nonstructural Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D017361","descriptor_name":"Viral Nonstructural Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020506","descriptor_name":"Untranslated Regions","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020506","descriptor_name":"Untranslated Regions","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020506","descriptor_name":"Untranslated Regions","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1371/journal.pcbi.1009804","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1009804","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:35045069","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35045069","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:doaj.org/article:722c8425d04442239c1f7f3c8d1318dd","is_oa":true,"landing_page_url":"https://doaj.org/article/722c8425d04442239c1f7f3c8d1318dd","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 18, Iss 1, p e1009804 (2022)","raw_type":"article"},{"id":"pmh:oai:irdb.nii.ac.jp:01116:0005250787","is_oa":true,"landing_page_url":"https://repo.qst.go.jp/records/84902","pdf_url":null,"source":{"id":"https://openalex.org/S7407056385","display_name":"Institutional Repositories DataBase (IRDB)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I184597095","host_organization_name":"National Institute of Informatics","host_organization_lineage":["https://openalex.org/I184597095"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology","raw_type":"journal article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8803185","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8803185","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1009804","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1009804","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.6399999856948853}],"awards":[{"id":"https://openalex.org/G1875701479","display_name":null,"funder_award_id":"JP20K12041","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G2302073895","display_name":null,"funder_award_id":"JP21H04912","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G3584406041","display_name":null,"funder_award_id":"JP16H02484","funder_id":"https://openalex.org/F4320320912","funder_display_name":"Ministry of Education, Culture, Sports, Science and Technology"},{"id":"https://openalex.org/G3613977670","display_name":null,"funder_award_id":"JP21am0101106","funder_id":"https://openalex.org/F4320311405","funder_display_name":"Japan Agency for Medical Research and Development"},{"id":"https://openalex.org/G4532089706","display_name":null,"funder_award_id":"JP16H02484","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G5457652977","display_name":null,"funder_award_id":"JP19H05410","funder_id":"https://openalex.org/F4320320912","funder_display_name":"Ministry of Education, Culture, Sports, Science and Technology"},{"id":"https://openalex.org/G7032804709","display_name":null,"funder_award_id":"JP16K17778","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G7162648243","display_name":null,"funder_award_id":"JP20K12069","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"}],"funders":[{"id":"https://openalex.org/F4320311405","display_name":"Japan Agency for Medical Research and Development","ror":"https://ror.org/004rtk039"},{"id":"https://openalex.org/F4320320912","display_name":"Ministry of Education, Culture, Sports, Science and Technology","ror":"https://ror.org/048rj2z13"},{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":73,"referenced_works":["https://openalex.org/W1031578623","https://openalex.org/W1595347157","https://openalex.org/W1673310716","https://openalex.org/W1964758803","https://openalex.org/W1974963408","https://openalex.org/W1976161355","https://openalex.org/W1976499671","https://openalex.org/W1981225934","https://openalex.org/W1984481443","https://openalex.org/W1989383586","https://openalex.org/W1999050752","https://openalex.org/W2008708467","https://openalex.org/W2024762727","https://openalex.org/W2029667189","https://openalex.org/W2030632564","https://openalex.org/W2041652966","https://openalex.org/W2045683699","https://openalex.org/W2053186308","https://openalex.org/W2057477511","https://openalex.org/W2068070201","https://openalex.org/W2071680235","https://openalex.org/W2077064224","https://openalex.org/W2079255671","https://openalex.org/W2081046982","https://openalex.org/W2116413427","https://openalex.org/W2122199548","https://openalex.org/W2128572087","https://openalex.org/W2131288855","https://openalex.org/W2131409628","https://openalex.org/W2132629607","https://openalex.org/W2136729627","https://openalex.org/W2142038007","https://openalex.org/W2144288821","https://openalex.org/W2147988069","https://openalex.org/W2156016724","https://openalex.org/W2156095183","https://openalex.org/W2234602429","https://openalex.org/W2293268857","https://openalex.org/W2404280981","https://openalex.org/W2530493445","https://openalex.org/W2609476392","https://openalex.org/W2781504307","https://openalex.org/W2782369838","https://openalex.org/W2790470680","https://openalex.org/W2800697076","https://openalex.org/W2800801983","https://openalex.org/W2894372972","https://openalex.org/W2951831607","https://openalex.org/W2952967772","https://openalex.org/W3003217347","https://openalex.org/W3017680297","https://openalex.org/W3043427328","https://openalex.org/W3083872269","https://openalex.org/W3084858913","https://openalex.org/W3087615546","https://openalex.org/W3092296275","https://openalex.org/W3092713446","https://openalex.org/W3094854996","https://openalex.org/W3097585503","https://openalex.org/W3105581675","https://openalex.org/W3105901899","https://openalex.org/W3108368875","https://openalex.org/W3111512297","https://openalex.org/W3111954772","https://openalex.org/W3127873787","https://openalex.org/W3130801441","https://openalex.org/W3152310883","https://openalex.org/W3163640205","https://openalex.org/W3165186393","https://openalex.org/W3189823688","https://openalex.org/W3202854217","https://openalex.org/W4226138377","https://openalex.org/W6782905946"],"related_works":["https://openalex.org/W3036314732","https://openalex.org/W3009669391","https://openalex.org/W3176864053","https://openalex.org/W4206669628","https://openalex.org/W3171943759","https://openalex.org/W4292098121","https://openalex.org/W3154141118","https://openalex.org/W4388896133","https://openalex.org/W3031607536","https://openalex.org/W3198183218"],"abstract_inverted_index":{"Nonstructural":[0],"protein":[1,15],"1":[2],"(nsp1)":[3],"of":[4,19,59,72,92,143,150],"severe":[5],"acute":[6],"respiratory":[7],"syndrome":[8],"coronavirus":[9],"2":[10],"(SARS-CoV-2)":[11],"is":[12,27],"a":[13],"180-residue":[14],"that":[16,29,67],"blocks":[17],"translation":[18,36],"host":[20,35],"mRNAs":[21],"in":[22,164],"SARS-CoV-2-infected":[23],"cells.":[24],"Although":[25],"it":[26],"known":[28],"SARS-CoV-2's":[30],"own":[31],"RNA":[32,62,75],"evades":[33],"nsp1's":[34,82],"shutoff,":[37],"the":[38,42,57,60,68,73,93,108,113,127,132,135,144,151,165,171],"molecular":[39,52],"mechanism":[40,58],"underlying":[41],"evasion":[43],"was":[44,95,129],"poorly":[45],"understood.":[46],"We":[47],"performed":[48],"an":[49],"extended":[50],"ensemble":[51],"dynamics":[53],"simulation":[54,128],"to":[55,80,131],"investigate":[56],"viral":[61],"evasion.":[63],"Simulation":[64],"results":[65,94],"suggested":[66],"stem":[69],"loop":[70],"structure":[71,101,111],"SARS-CoV-2":[74],"5'-untranslated":[76],"region":[77,85,124],"(SL1)":[78],"binds":[79],"both":[81],"N-terminal":[83],"globular":[84],"and":[86,118,147,159],"intrinsically":[87],"disordered":[88],"region.":[89],"The":[90,121],"consistency":[91],"assessed":[96],"by":[97],"modeling":[98],"nsp1-40S":[99],"ribosome":[100,136],"based":[102],"on":[103],"reported":[104],"nsp1":[105],"experiments,":[106],"including":[107],"X-ray":[109],"crystallographic":[110],"analysis,":[112],"cryo-EM":[114],"electron":[115],"density":[116],"map,":[117],"cross-linking":[119],"experiments.":[120],"SL1":[122,166],"binding":[123,145,152],"predicted":[125],"from":[126],"open":[130],"solvent,":[133],"yet":[134],"could":[137],"interact":[138],"with":[139,170],"SL1.":[140],"Cluster":[141],"analysis":[142,149],"mode":[146],"detailed":[148],"poses":[153],"suggest":[154],"residues":[155],"Arg124,":[156],"Lys47,":[157],"Arg43,":[158],"Asn126":[160],"may":[161],"be":[162],"involved":[163],"recognition":[167],"mechanism,":[168],"consistent":[169],"existing":[172],"mutational":[173],"analysis.":[174]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
