{"id":"https://openalex.org/W4282033657","doi":"https://doi.org/10.1371/journal.pcbi.1009657","title":"Model-checking ecological state-transition graphs","display_name":"Model-checking ecological state-transition graphs","publication_year":2022,"publication_date":"2022-06-06","ids":{"openalex":"https://openalex.org/W4282033657","doi":"https://doi.org/10.1371/journal.pcbi.1009657","pmid":"https://pubmed.ncbi.nlm.nih.gov/35666771"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1009657","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1009657","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1371/journal.pcbi.1009657","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5010615591","display_name":"Colin G. Thomas","orcid":"https://orcid.org/0000-0002-7650-784X"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I131077856","display_name":"Centre de Coop\u00e9ration Internationale en Recherche Agronomique pour le D\u00e9veloppement","ror":"https://ror.org/05kpkpg04","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I24906876","display_name":"Institut Agro Montpellier","ror":"https://ror.org/03rnk6m14","country_code":"FR","type":"education","lineage":["https://openalex.org/I24906876","https://openalex.org/I4210117091","https://openalex.org/I4399657933"]},{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210107733","display_name":"Informatique, BioInformatique, Syst\u00e8mes Complexes","ror":"https://ror.org/01aqxgr98","country_code":"FR","type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I4210107733","https://openalex.org/I88467170"]},{"id":"https://openalex.org/I4210121611","display_name":"UMR Botanique et Mod\u00e9lisation de l\u2019Architecture des Plantes et des v\u00e9g\u00e9tations","ror":"https://ror.org/020nks034","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I131077856","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I19894307","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210113730","https://openalex.org/I4210121611","https://openalex.org/I4210131494","https://openalex.org/I4210137371","https://openalex.org/I4210139971","https://openalex.org/I4210147367","https://openalex.org/I4210166444","https://openalex.org/I4405257220"]},{"id":"https://openalex.org/I4210166444","display_name":"Institut de Recherche pour le D\u00e9veloppement","ror":"https://ror.org/05q3vnk25","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210113730","https://openalex.org/I4210131494","https://openalex.org/I4210166444","https://openalex.org/I4405257220"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Colin Thomas","raw_affiliation_strings":["AMAP, Univ. Montpellier, INRAE, CIRAD, CNRS, IRD, Montpellier, France","IBISC, Univ. \u00c9vry, Univ. Paris-Saclay, 91020 \u00c9vry-Courcouronne, France","IBISC - Informatique, BioInformatique, Syst\u00e8mes Complexes (40,rue du pelvoux, Courcouronnes 91020 EVRY CEDEX - France)","UMR AMAP - Botanique et Mod\u00e9lisation de l'Architecture des Plantes et des V\u00e9g\u00e9tations (Bd de la Lironde TA A-51/ PS 2 34398 Montpellier cedex 5 - France)"],"affiliations":[{"raw_affiliation_string":"AMAP, Univ. Montpellier, INRAE, CIRAD, CNRS, IRD, Montpellier, France","institution_ids":["https://openalex.org/I24906876","https://openalex.org/I131077856","https://openalex.org/I4210121611","https://openalex.org/I4210088668","https://openalex.org/I19894307","https://openalex.org/I1294671590","https://openalex.org/I4210166444"]},{"raw_affiliation_string":"IBISC, Univ. \u00c9vry, Univ. Paris-Saclay, 91020 \u00c9vry-Courcouronne, France","institution_ids":["https://openalex.org/I277688954","https://openalex.org/I4210107733"]},{"raw_affiliation_string":"IBISC - Informatique, BioInformatique, Syst\u00e8mes Complexes (40,rue du pelvoux, Courcouronnes 91020 EVRY CEDEX - France)","institution_ids":["https://openalex.org/I4210107733"]},{"raw_affiliation_string":"UMR AMAP - Botanique et Mod\u00e9lisation de l'Architecture des Plantes et des V\u00e9g\u00e9tations (Bd de la Lironde TA A-51/ PS 2 34398 Montpellier cedex 5 - France)","institution_ids":["https://openalex.org/I4210121611"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001660792","display_name":"Maximilien Cosme","orcid":"https://orcid.org/0000-0001-8353-5104"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I131077856","display_name":"Centre de Coop\u00e9ration Internationale en Recherche Agronomique pour le D\u00e9veloppement","ror":"https://ror.org/05kpkpg04","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I24906876","display_name":"Institut Agro Montpellier","ror":"https://ror.org/03rnk6m14","country_code":"FR","type":"education","lineage":["https://openalex.org/I24906876","https://openalex.org/I4210117091","https://openalex.org/I4399657933"]},{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210121611","display_name":"UMR Botanique et Mod\u00e9lisation de l\u2019Architecture des Plantes et des v\u00e9g\u00e9tations","ror":"https://ror.org/020nks034","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I131077856","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I19894307","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210113730","https://openalex.org/I4210121611","https://openalex.org/I4210131494","https://openalex.org/I4210137371","https://openalex.org/I4210139971","https://openalex.org/I4210147367","https://openalex.org/I4210166444","https://openalex.org/I4405257220"]},{"id":"https://openalex.org/I4210166444","display_name":"Institut de Recherche pour le D\u00e9veloppement","ror":"https://ror.org/05q3vnk25","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210113730","https://openalex.org/I4210131494","https://openalex.org/I4210166444","https://openalex.org/I4405257220"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Maximilien Cosme","raw_affiliation_strings":["AMAP, Univ. Montpellier, INRAE, CIRAD, CNRS, IRD, Montpellier, France","UMR AMAP - Botanique et Mod\u00e9lisation de l'Architecture des Plantes et des V\u00e9g\u00e9tations (Bd de la Lironde TA A-51/ PS 2 34398 Montpellier cedex 5 - France)"],"affiliations":[{"raw_affiliation_string":"AMAP, Univ. Montpellier, INRAE, CIRAD, CNRS, IRD, Montpellier, France","institution_ids":["https://openalex.org/I24906876","https://openalex.org/I131077856","https://openalex.org/I4210121611","https://openalex.org/I4210088668","https://openalex.org/I19894307","https://openalex.org/I1294671590","https://openalex.org/I4210166444"]},{"raw_affiliation_string":"UMR AMAP - Botanique et Mod\u00e9lisation de l'Architecture des Plantes et des V\u00e9g\u00e9tations (Bd de la Lironde TA A-51/ PS 2 34398 Montpellier cedex 5 - France)","institution_ids":["https://openalex.org/I4210121611"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069588233","display_name":"C\u00e9dric Gaucherel","orcid":"https://orcid.org/0000-0002-4521-8914"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I131077856","display_name":"Centre de Coop\u00e9ration Internationale en Recherche Agronomique pour le D\u00e9veloppement","ror":"https://ror.org/05kpkpg04","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I24906876","display_name":"Institut Agro Montpellier","ror":"https://ror.org/03rnk6m14","country_code":"FR","type":"education","lineage":["https://openalex.org/I24906876","https://openalex.org/I4210117091","https://openalex.org/I4399657933"]},{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210121611","display_name":"UMR Botanique et Mod\u00e9lisation de l\u2019Architecture des Plantes et des v\u00e9g\u00e9tations","ror":"https://ror.org/020nks034","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I131077856","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I19894307","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210113730","https://openalex.org/I4210121611","https://openalex.org/I4210131494","https://openalex.org/I4210137371","https://openalex.org/I4210139971","https://openalex.org/I4210147367","https://openalex.org/I4210166444","https://openalex.org/I4405257220"]},{"id":"https://openalex.org/I4210166444","display_name":"Institut de Recherche pour le D\u00e9veloppement","ror":"https://ror.org/05q3vnk25","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210113730","https://openalex.org/I4210131494","https://openalex.org/I4210166444","https://openalex.org/I4405257220"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"C\u00e9dric Gaucherel","raw_affiliation_strings":["AMAP, Univ. Montpellier, INRAE, CIRAD, CNRS, IRD, Montpellier, France","UMR AMAP - Botanique et Mod\u00e9lisation de l'Architecture des Plantes et des V\u00e9g\u00e9tations (Bd de la Lironde TA A-51/ PS 2 34398 Montpellier cedex 5 - France)"],"affiliations":[{"raw_affiliation_string":"AMAP, Univ. Montpellier, INRAE, CIRAD, CNRS, IRD, Montpellier, France","institution_ids":["https://openalex.org/I24906876","https://openalex.org/I131077856","https://openalex.org/I4210121611","https://openalex.org/I4210088668","https://openalex.org/I19894307","https://openalex.org/I1294671590","https://openalex.org/I4210166444"]},{"raw_affiliation_string":"UMR AMAP - Botanique et Mod\u00e9lisation de l'Architecture des Plantes et des V\u00e9g\u00e9tations (Bd de la Lironde TA A-51/ PS 2 34398 Montpellier cedex 5 - France)","institution_ids":["https://openalex.org/I4210121611"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5069395164","display_name":"Franck Pommereau","orcid":"https://orcid.org/0000-0002-9959-3699"},"institutions":[{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210107733","display_name":"Informatique, BioInformatique, Syst\u00e8mes Complexes","ror":"https://ror.org/01aqxgr98","country_code":"FR","type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I4210107733","https://openalex.org/I88467170"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Franck Pommereau","raw_affiliation_strings":["IBISC, Univ. \u00c9vry, Univ. Paris-Saclay, 91020 \u00c9vry-Courcouronne, France","IBISC - Informatique, BioInformatique, Syst\u00e8mes Complexes (40,rue du pelvoux, Courcouronnes 91020 EVRY CEDEX - France)"],"affiliations":[{"raw_affiliation_string":"IBISC, Univ. \u00c9vry, Univ. Paris-Saclay, 91020 \u00c9vry-Courcouronne, France","institution_ids":["https://openalex.org/I277688954","https://openalex.org/I4210107733"]},{"raw_affiliation_string":"IBISC - Informatique, BioInformatique, Syst\u00e8mes Complexes (40,rue du pelvoux, Courcouronnes 91020 EVRY CEDEX - France)","institution_ids":["https://openalex.org/I4210107733"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5010615591","https://openalex.org/A5069395164"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I131077856","https://openalex.org/I19894307","https://openalex.org/I24906876","https://openalex.org/I277688954","https://openalex.org/I4210088668","https://openalex.org/I4210107733","https://openalex.org/I4210121611","https://openalex.org/I4210166444"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2482,"currency":"EUR","value_usd":2676},"fwci":1.0398,"has_fulltext":false,"cited_by_count":14,"citation_normalized_percentile":{"value":0.74680426,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"18","issue":"6","first_page":"e1009657","last_page":"e1009657"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9919999837875366,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9843999743461609,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/model-checking","display_name":"Model checking","score":0.7707543969154358},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6836680173873901},{"id":"https://openalex.org/keywords/sketch","display_name":"Sketch","score":0.6814338564872742},{"id":"https://openalex.org/keywords/state","display_name":"State (computer science)","score":0.5332685708999634},{"id":"https://openalex.org/keywords/temporal-logic","display_name":"Temporal logic","score":0.519934356212616},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.518469512462616},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.4663879871368408},{"id":"https://openalex.org/keywords/computation-tree-logic","display_name":"Computation tree logic","score":0.44827860593795776},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4219937324523926},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.39688169956207275},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.15568822622299194},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.14377427101135254}],"concepts":[{"id":"https://openalex.org/C110251889","wikidata":"https://www.wikidata.org/wiki/Q1569697","display_name":"Model checking","level":2,"score":0.7707543969154358},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6836680173873901},{"id":"https://openalex.org/C2779231336","wikidata":"https://www.wikidata.org/wiki/Q7534724","display_name":"Sketch","level":2,"score":0.6814338564872742},{"id":"https://openalex.org/C48103436","wikidata":"https://www.wikidata.org/wiki/Q599031","display_name":"State (computer science)","level":2,"score":0.5332685708999634},{"id":"https://openalex.org/C25016198","wikidata":"https://www.wikidata.org/wiki/Q781833","display_name":"Temporal logic","level":2,"score":0.519934356212616},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.518469512462616},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.4663879871368408},{"id":"https://openalex.org/C198008173","wikidata":"https://www.wikidata.org/wiki/Q1040040","display_name":"Computation tree logic","level":3,"score":0.44827860593795776},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4219937324523926},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.39688169956207275},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.15568822622299194},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.14377427101135254},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D008128","descriptor_name":"Logic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008128","descriptor_name":"Logic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008128","descriptor_name":"Logic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008128","descriptor_name":"Logic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011340","descriptor_name":"Problem Solving","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017753","descriptor_name":"Ecosystem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017753","descriptor_name":"Ecosystem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017753","descriptor_name":"Ecosystem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017753","descriptor_name":"Ecosystem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1371/journal.pcbi.1009657","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1009657","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:35666771","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35666771","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:HAL:hal-03719082v1","is_oa":true,"landing_page_url":"https://hal.science/hal-03719082","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, 2022, 18 (6), pp.e1009657. &#x27E8;10.1371/journal.pcbi.1009657&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:doaj.org/article:8e45bba9d0b54a24b6738c8b3a634979","is_oa":true,"landing_page_url":"https://doaj.org/article/8e45bba9d0b54a24b6738c8b3a634979","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 18, Iss 6, p e1009657 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9203009","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9203009","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1009657","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1009657","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.75,"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":67,"referenced_works":["https://openalex.org/W58125149","https://openalex.org/W119378269","https://openalex.org/W1273791837","https://openalex.org/W1497489765","https://openalex.org/W1498432697","https://openalex.org/W1557512698","https://openalex.org/W1962072139","https://openalex.org/W1979612518","https://openalex.org/W1991663603","https://openalex.org/W1994665850","https://openalex.org/W1994793209","https://openalex.org/W1996832037","https://openalex.org/W2026407741","https://openalex.org/W2034571468","https://openalex.org/W2034720356","https://openalex.org/W2038645071","https://openalex.org/W2038656639","https://openalex.org/W2043586908","https://openalex.org/W2061438988","https://openalex.org/W2076358795","https://openalex.org/W2081671974","https://openalex.org/W2101508170","https://openalex.org/W2109223976","https://openalex.org/W2113540059","https://openalex.org/W2117949454","https://openalex.org/W2119375092","https://openalex.org/W2126337357","https://openalex.org/W2131463591","https://openalex.org/W2155043740","https://openalex.org/W2157206590","https://openalex.org/W2167437179","https://openalex.org/W2180695485","https://openalex.org/W2267638272","https://openalex.org/W2269418830","https://openalex.org/W2306815577","https://openalex.org/W2318462315","https://openalex.org/W2417863416","https://openalex.org/W2436013910","https://openalex.org/W2468260939","https://openalex.org/W2472185178","https://openalex.org/W2479977728","https://openalex.org/W2509721407","https://openalex.org/W2519323300","https://openalex.org/W2555463897","https://openalex.org/W2588067090","https://openalex.org/W2605666473","https://openalex.org/W2766740816","https://openalex.org/W2800966757","https://openalex.org/W2804240010","https://openalex.org/W2898325324","https://openalex.org/W2898671507","https://openalex.org/W2912640545","https://openalex.org/W2952269851","https://openalex.org/W2952398635","https://openalex.org/W3016145379","https://openalex.org/W3022695170","https://openalex.org/W3032980049","https://openalex.org/W3042957797","https://openalex.org/W3092573758","https://openalex.org/W3099565186","https://openalex.org/W3102426116","https://openalex.org/W3110802351","https://openalex.org/W3124667933","https://openalex.org/W3146208393","https://openalex.org/W4200247680","https://openalex.org/W4236285657","https://openalex.org/W4285307335"],"related_works":["https://openalex.org/W1551070491","https://openalex.org/W2103740034","https://openalex.org/W14017695","https://openalex.org/W2203774400","https://openalex.org/W2471765219","https://openalex.org/W2350953867","https://openalex.org/W2166027622","https://openalex.org/W2157373800","https://openalex.org/W2612218842","https://openalex.org/W1585262231"],"abstract_inverted_index":{"Model-checking":[0,58],"is":[1,123],"a":[2,19,23,27,32,49,83,135,155],"methodology":[3],"developed":[4],"in":[5,86,93,168],"computer":[6],"science":[7],"to":[8,55,81,102,130,176],"automatically":[9],"assess":[10,131],"the":[11,118,126,132,177],"dynamics":[12,37,133],"of":[13,38,109,117,128,134,158,180],"discrete":[14],"systems,":[15],"by":[16,125,143],"checking":[17],"if":[18],"system":[20],"modelled":[21],"as":[22,31,43,69,71],"state-transition":[24,44,76,182],"graph":[25],"satisfies":[26],"dynamical":[28],"property":[29],"written":[30],"temporal":[33,191],"logic":[34],"formula.":[35],"The":[36],"ecosystems":[39],"have":[40],"been":[41],"drawn":[42],"graphs":[45],"for":[46],"more":[47],"than":[48],"century,":[50],"ranging":[51],"from":[52,96,154],"state-and-transition":[53],"models":[54],"assembly":[56],"graphs.":[57,77],"can":[59],"provide":[60],"insights":[61],"into":[62,75],"both":[63],"empirical":[64],"data":[65],"and":[66,113,152,170,196],"theoretical":[67],"models,":[68],"long":[70],"they":[72],"sum":[73],"up":[74],"While":[78],"model-checking":[79,119,129,144,172],"proved":[80],"be":[82],"valuable":[84],"tool":[85],"systems":[87],"biology,":[88],"it":[89],"remains":[90],"largely":[91],"underused":[92],"ecology":[94,169],"apart":[95],"precursory":[97],"applications.":[98],"This":[99,121],"article":[100],"proposes":[101],"address":[103],"this":[104],"situation,":[105],"through":[106],"an":[107,114],"inventory":[108],"existing":[110,166],"ecological":[111,181,188],"STGs":[112],"accessible":[115],"presentation":[116],"methodology.":[120],"overview":[122],"illustrated":[124],"application":[127],"vegetation":[136],"pathways":[137],"model.":[138],"We":[139],"select":[140],"management":[141,150],"scenarios":[142],"Computation":[145],"Tree":[146],"Logic":[147],"formulas":[148],"representing":[149],"goals":[151],"built":[153],"proposed":[156],"catalogue":[157],"patterns.":[159],"In":[160,174],"discussion,":[161],"we":[162,184],"sketch":[163],"bridges":[164],"between":[165],"studies":[167],"available":[171],"frameworks.":[173],"addition":[175],"automated":[178],"analysis":[179],"graphs,":[183],"believe":[185],"that":[186],"defining":[187],"concepts":[189],"with":[190],"logics":[192],"could":[193],"help":[194],"clarify":[195],"compare":[197],"them.":[198]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":5}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
