{"id":"https://openalex.org/W3216606420","doi":"https://doi.org/10.1371/journal.pcbi.1009587","title":"Data-driven multi-scale mathematical modeling of SARS-CoV-2 infection reveals heterogeneity among COVID-19 patients","display_name":"Data-driven multi-scale mathematical modeling of SARS-CoV-2 infection reveals heterogeneity among COVID-19 patients","publication_year":2021,"publication_date":"2021-11-24","ids":{"openalex":"https://openalex.org/W3216606420","doi":"https://doi.org/10.1371/journal.pcbi.1009587","mag":"3216606420","pmid":"https://pubmed.ncbi.nlm.nih.gov/34818337"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1009587","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1009587","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1371/journal.pcbi.1009587","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100424627","display_name":"Shun Wang","orcid":"https://orcid.org/0000-0003-2694-9559"},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shun Wang","raw_affiliation_strings":["Hubei Key Laboratory of Computational Science, Wuhan University, Wuhan, China","School of Mathematics and Statistics, Wuhan University, Wuhan, China"],"raw_orcid":"https://orcid.org/0000-0003-2694-9559","affiliations":[{"raw_affiliation_string":"Hubei Key Laboratory of Computational Science, Wuhan University, Wuhan, China","institution_ids":["https://openalex.org/I37461747"]},{"raw_affiliation_string":"School of Mathematics and Statistics, Wuhan University, Wuhan, China","institution_ids":["https://openalex.org/I37461747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090747028","display_name":"Mengqian Hao","orcid":"https://orcid.org/0000-0002-3918-0737"},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mengqian Hao","raw_affiliation_strings":["Hubei Key Laboratory of Computational Science, Wuhan University, Wuhan, China","School of Mathematics and Statistics, Wuhan University, Wuhan, China"],"raw_orcid":"https://orcid.org/0000-0002-3918-0737","affiliations":[{"raw_affiliation_string":"Hubei Key Laboratory of Computational Science, Wuhan University, Wuhan, China","institution_ids":["https://openalex.org/I37461747"]},{"raw_affiliation_string":"School of Mathematics and Statistics, Wuhan University, Wuhan, China","institution_ids":["https://openalex.org/I37461747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062218864","display_name":"Zishu Pan","orcid":"https://orcid.org/0000-0002-5326-3264"},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zishu Pan","raw_affiliation_strings":["State Key Laboratory of Virology, College of Life Sciences, Wuhan University, Wuhan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Virology, College of Life Sciences, Wuhan University, Wuhan, China","institution_ids":["https://openalex.org/I37461747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021871320","display_name":"Jinzhi Lei","orcid":"https://orcid.org/0000-0002-2670-6760"},"institutions":[{"id":"https://openalex.org/I198091727","display_name":"Tiangong University","ror":"https://ror.org/00xsr9m91","country_code":"CN","type":"education","lineage":["https://openalex.org/I198091727"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jinzhi Lei","raw_affiliation_strings":["School of Mathematical Sciences, Center for Applied Mathematics, Tiangong University, Tianjin, China"],"raw_orcid":"https://orcid.org/0000-0002-2670-6760","affiliations":[{"raw_affiliation_string":"School of Mathematical Sciences, Center for Applied Mathematics, Tiangong University, Tianjin, China","institution_ids":["https://openalex.org/I198091727"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009409122","display_name":"Xiufen Zou","orcid":"https://orcid.org/0000-0001-5294-0764"},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiufen Zou","raw_affiliation_strings":["Hubei Key Laboratory of Computational Science, Wuhan University, Wuhan, China","School of Mathematics and Statistics, Wuhan University, Wuhan, China"],"raw_orcid":"https://orcid.org/0000-0001-5294-0764","affiliations":[{"raw_affiliation_string":"Hubei Key Laboratory of Computational Science, Wuhan University, Wuhan, China","institution_ids":["https://openalex.org/I37461747"]},{"raw_affiliation_string":"School of Mathematics and Statistics, Wuhan University, Wuhan, China","institution_ids":["https://openalex.org/I37461747"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5009409122","https://openalex.org/A5021871320"],"corresponding_institution_ids":["https://openalex.org/I198091727","https://openalex.org/I37461747"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":1.3689,"has_fulltext":false,"cited_by_count":28,"citation_normalized_percentile":{"value":0.84311008,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"17","issue":"11","first_page":"e1009587","last_page":"e1009587"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10041","display_name":"COVID-19 Clinical Research Studies","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10410","display_name":"COVID-19 epidemiological studies","score":0.9896000027656555,"subfield":{"id":"https://openalex.org/subfields/2611","display_name":"Modeling and Simulation"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/asymptomatic","display_name":"Asymptomatic","score":0.7032338976860046},{"id":"https://openalex.org/keywords/incubation-period","display_name":"Incubation period","score":0.5504603385925293},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.5227510929107666},{"id":"https://openalex.org/keywords/coronavirus-disease-2019","display_name":"Coronavirus disease 2019 (COVID-19)","score":0.5015804767608643},{"id":"https://openalex.org/keywords/coronavirus","display_name":"Coronavirus","score":0.4808552861213684},{"id":"https://openalex.org/keywords/immune-system","display_name":"Immune system","score":0.47817665338516235},{"id":"https://openalex.org/keywords/severe-acute-respiratory-syndrome-coronavirus-2","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","score":0.45078152418136597},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.4347992241382599},{"id":"https://openalex.org/keywords/interferon","display_name":"Interferon","score":0.4219828248023987},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.41918349266052246},{"id":"https://openalex.org/keywords/virus","display_name":"Virus","score":0.41624316573143005},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.36061856150627136},{"id":"https://openalex.org/keywords/infectious-disease","display_name":"Infectious disease (medical specialty)","score":0.327298641204834},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.27250075340270996},{"id":"https://openalex.org/keywords/incubation","display_name":"Incubation","score":0.2545381188392639}],"concepts":[{"id":"https://openalex.org/C2777910003","wikidata":"https://www.wikidata.org/wiki/Q1707292","display_name":"Asymptomatic","level":2,"score":0.7032338976860046},{"id":"https://openalex.org/C143701427","wikidata":"https://www.wikidata.org/wiki/Q193566","display_name":"Incubation period","level":3,"score":0.5504603385925293},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.5227510929107666},{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.5015804767608643},{"id":"https://openalex.org/C2777648638","wikidata":"https://www.wikidata.org/wiki/Q57751738","display_name":"Coronavirus","level":5,"score":0.4808552861213684},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.47817665338516235},{"id":"https://openalex.org/C3007834351","wikidata":"https://www.wikidata.org/wiki/Q82069695","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","level":5,"score":0.45078152418136597},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.4347992241382599},{"id":"https://openalex.org/C2776178377","wikidata":"https://www.wikidata.org/wiki/Q188269","display_name":"Interferon","level":2,"score":0.4219828248023987},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.41918349266052246},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.41624316573143005},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.36061856150627136},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.327298641204834},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.27250075340270996},{"id":"https://openalex.org/C25642318","wikidata":"https://www.wikidata.org/wiki/Q1992532","display_name":"Incubation","level":2,"score":0.2545381188392639},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000076662","descriptor_name":"Host Microbial Interactions","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000076662","descriptor_name":"Host Microbial Interactions","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000076662","descriptor_name":"Host Microbial Interactions","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000209","qualifier_name":"etiology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000209","qualifier_name":"etiology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000209","qualifier_name":"etiology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000628","qualifier_name":"therapy","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000628","qualifier_name":"therapy","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000628","qualifier_name":"therapy","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":true},{"descriptor_ui":"D000998","descriptor_name":"Antiviral Agents","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D000998","descriptor_name":"Antiviral Agents","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D000998","descriptor_name":"Antiviral Agents","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007370","descriptor_name":"Interferon Type I","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":false},{"descriptor_ui":"D007370","descriptor_name":"Interferon Type I","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":false},{"descriptor_ui":"D007370","descriptor_name":"Interferon Type I","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":false},{"descriptor_ui":"D008213","descriptor_name":"Lymphocyte Activation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008213","descriptor_name":"Lymphocyte Activation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008213","descriptor_name":"Lymphocyte Activation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011379","descriptor_name":"Prognosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011379","descriptor_name":"Prognosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011379","descriptor_name":"Prognosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012720","descriptor_name":"Severity of Illness Index","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012720","descriptor_name":"Severity of Illness Index","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012720","descriptor_name":"Severity of Illness Index","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013601","descriptor_name":"T-Lymphocytes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D013601","descriptor_name":"T-Lymphocytes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D013601","descriptor_name":"T-Lymphocytes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016896","descriptor_name":"Treatment Outcome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016896","descriptor_name":"Treatment Outcome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016896","descriptor_name":"Treatment Outcome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018448","descriptor_name":"Models, Immunological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018448","descriptor_name":"Models, Immunological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018448","descriptor_name":"Models, Immunological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018450","descriptor_name":"Disease Progression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018450","descriptor_name":"Disease Progression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018450","descriptor_name":"Disease Progression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058873","descriptor_name":"Pandemics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D058873","descriptor_name":"Pandemics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D058873","descriptor_name":"Pandemics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1371/journal.pcbi.1009587","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1009587","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:34818337","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34818337","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:doaj.org/article:a2d2d2b91d584087a376f64ed24e8fbb","is_oa":true,"landing_page_url":"https://doaj.org/article/a2d2d2b91d584087a376f64ed24e8fbb","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 17, Iss 11, p e1009587 (2021)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8654229","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8654229","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1009587","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1009587","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.8100000023841858,"display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G1302938317","display_name":null,"funder_award_id":"11831015","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1523710547","display_name":null,"funder_award_id":"2019CFA007","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2826775739","display_name":null,"funder_award_id":"2019CFA007","funder_id":"https://openalex.org/F4320322186","funder_display_name":"Natural Science Foundation of Hubei Province"},{"id":"https://openalex.org/G7495276621","display_name":null,"funder_award_id":"no. 11831015","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8926992683","display_name":null,"funder_award_id":"no. 2019CFA007","funder_id":"https://openalex.org/F4320322186","funder_display_name":"Natural Science Foundation of Hubei Province"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322186","display_name":"Natural Science Foundation of Hubei Province","ror":null},{"id":"https://openalex.org/F4320324116","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":78,"referenced_works":["https://openalex.org/W146649095","https://openalex.org/W1910012553","https://openalex.org/W1972726560","https://openalex.org/W2023165046","https://openalex.org/W2069877054","https://openalex.org/W2101531288","https://openalex.org/W2104187790","https://openalex.org/W2119896120","https://openalex.org/W2133449490","https://openalex.org/W2134549076","https://openalex.org/W2152803686","https://openalex.org/W2165173534","https://openalex.org/W2167384912","https://openalex.org/W2610356532","https://openalex.org/W2800672148","https://openalex.org/W2936804536","https://openalex.org/W3001118548","https://openalex.org/W3004239190","https://openalex.org/W3004912618","https://openalex.org/W3005655936","https://openalex.org/W3006065484","https://openalex.org/W3007277154","https://openalex.org/W3007406215","https://openalex.org/W3007643904","https://openalex.org/W3007859670","https://openalex.org/W3007940623","https://openalex.org/W3009607814","https://openalex.org/W3009733584","https://openalex.org/W3009859788","https://openalex.org/W3009885589","https://openalex.org/W3010236187","https://openalex.org/W3011241484","https://openalex.org/W3011610993","https://openalex.org/W3011812996","https://openalex.org/W3012673820","https://openalex.org/W3015134137","https://openalex.org/W3016084006","https://openalex.org/W3016460100","https://openalex.org/W3018494531","https://openalex.org/W3020773974","https://openalex.org/W3020909574","https://openalex.org/W3023465669","https://openalex.org/W3023991776","https://openalex.org/W3025482543","https://openalex.org/W3026456801","https://openalex.org/W3028711203","https://openalex.org/W3030136428","https://openalex.org/W3030915969","https://openalex.org/W3032859583","https://openalex.org/W3033392659","https://openalex.org/W3037185429","https://openalex.org/W3037544553","https://openalex.org/W3040134252","https://openalex.org/W3040928076","https://openalex.org/W3041319886","https://openalex.org/W3041960835","https://openalex.org/W3043831218","https://openalex.org/W3046194290","https://openalex.org/W3046377771","https://openalex.org/W3080622028","https://openalex.org/W3084879098","https://openalex.org/W3086172936","https://openalex.org/W3086556551","https://openalex.org/W3087862874","https://openalex.org/W3088295956","https://openalex.org/W3092222771","https://openalex.org/W3093061534","https://openalex.org/W3093988179","https://openalex.org/W3094419073","https://openalex.org/W3101514325","https://openalex.org/W3111140255","https://openalex.org/W3112902030","https://openalex.org/W3116322109","https://openalex.org/W3123130740","https://openalex.org/W3127019801","https://openalex.org/W3138765576","https://openalex.org/W3181534243","https://openalex.org/W3197178087"],"related_works":["https://openalex.org/W2097753790","https://openalex.org/W2049776456","https://openalex.org/W1627705222","https://openalex.org/W2781494228","https://openalex.org/W2951399089","https://openalex.org/W3119120477","https://openalex.org/W2562811035","https://openalex.org/W4230540696","https://openalex.org/W3044331089","https://openalex.org/W3034828949"],"abstract_inverted_index":{"Patients":[0],"with":[1,12,46,84,157],"coronavirus":[2,52],"disease":[3,9],"2019":[4],"(COVID-19)":[5],"often":[6],"exhibit":[7],"diverse":[8],"progressions":[10],"associated":[11],"various":[13,186],"infectious":[14],"ability,":[15],"symptoms,":[16,153],"and":[17,22,64,67,76,100,127,151,154,181,204,223,250],"clinical":[18,82],"treatments.":[19],"To":[20],"systematically":[21],"thoroughly":[23],"understand":[24,38],"the":[25,39,95,109,124,129,139,147,175,183,218,229,242],"heterogeneous":[26,40],"progression":[27,41,249],"of":[28,42,57,73,97,142,163,177,185,206,221,244],"COVID-19,":[29],"we":[30,87,173],"developed":[31],"a":[32,71,161,168,238,253],"multi-scale":[33],"computational":[34],"model":[35,55,85],"to":[36,133],"quantitatively":[37],"COVID-19":[43,179,233,248,260],"patients":[44,156,180],"infected":[45,98],"severe":[47,152,158,213],"acute":[48],"respiratory":[49],"syndrome":[50],"(SARS)-like":[51],"(SARS-CoV-2).":[53],"The":[54],"consists":[56],"intracellular":[58],"viral":[59],"dynamics,":[60],"multicellular":[61],"infection":[62],"process,":[63],"immune":[65],"responses,":[66],"was":[68],"formulated":[69],"using":[70,91],"combination":[72,202],"differential":[74],"equations":[75],"stochastic":[77],"modeling.":[78],"By":[79],"integrating":[80],"multi-source":[81],"data":[83],"analysis,":[86],"quantified":[88,174],"individual":[89],"heterogeneity":[90,243],"two":[92],"indexes,":[93],"i.e.,":[94],"ratio":[96],"cells":[99,166],"incubation":[101,125],"period.":[102],"Specifically,":[103],"our":[104],"simulations":[105],"revealed":[106],"that":[107,155,192],"increasing":[108],"host":[110],"antiviral":[111,194],"state":[112],"or":[113],"virus":[114],"induced":[115],"type":[116],"I":[117],"interferon":[118],"(IFN)":[119],"production":[120],"rate":[121],"can":[122,251],"prolong":[123],"period":[126],"postpone":[128],"transition":[130,148,231,245],"from":[131],"asymptomatic":[132],"symptomatic":[134],"outcomes.":[135],"We":[136],"further":[137],"identified":[138],"threshold":[140],"dynamics":[141],"T":[143,165,207,224],"cell":[144,208,225],"exhaustion":[145,209],"in":[146,227,259],"between":[149],"mild-moderate":[150],"symptoms":[159],"exhibited":[160],"lack":[162],"na\u00efve":[164],"at":[167],"late":[169],"stage.":[170],"In":[171],"addition,":[172],"efficacy":[176],"treating":[178],"investigated":[182],"effects":[184],"therapeutic":[187],"strategies.":[188],"Simulations":[189],"results":[190,216],"suggested":[191],"single":[193],"therapy":[195,258],"is":[196],"sufficient":[197],"for":[198,212,256],"moderate":[199],"patients,":[200],"while":[201],"therapies":[203],"prevention":[205],"are":[210],"needed":[211],"patients.":[214,261],"These":[215],"highlight":[217],"critical":[219],"roles":[220],"IFN":[222],"responses":[226],"regulating":[228],"stage":[230,246],"during":[232,247],"progression.":[234],"Our":[235],"study":[236],"reveals":[237],"quantitative":[239],"relationship":[240],"underpinning":[241],"provide":[252],"potential":[254],"guidance":[255],"personalized":[257]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":6}],"updated_date":"2026-05-26T13:28:51.108037","created_date":"2025-10-10T00:00:00"}
