{"id":"https://openalex.org/W3198676969","doi":"https://doi.org/10.1371/journal.pcbi.1009300","title":"MicrobeTrace: Retooling molecular epidemiology for rapid public health response","display_name":"MicrobeTrace: Retooling molecular epidemiology for rapid public health response","publication_year":2021,"publication_date":"2021-09-07","ids":{"openalex":"https://openalex.org/W3198676969","doi":"https://doi.org/10.1371/journal.pcbi.1009300","mag":"3198676969","pmid":"https://pubmed.ncbi.nlm.nih.gov/34492010"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1009300","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1009300","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1009300&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1009300&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053874809","display_name":"Ellsworth M. Campbell","orcid":"https://orcid.org/0000-0002-9535-4420"},"institutions":[{"id":"https://openalex.org/I1289490764","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12","country_code":"US","type":"funder","lineage":["https://openalex.org/I1289490764","https://openalex.org/I1299022934"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ellsworth M. Campbell","raw_affiliation_strings":["Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-9535-4420","affiliations":[{"raw_affiliation_string":"Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America","institution_ids":["https://openalex.org/I1289490764"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017497776","display_name":"Anthony Boyles","orcid":"https://orcid.org/0000-0002-4448-0822"},"institutions":[{"id":"https://openalex.org/I2948394018","display_name":"Northrop Grumman (United States)","ror":"https://ror.org/05kewds18","country_code":"US","type":"company","lineage":["https://openalex.org/I2948394018"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anthony Boyles","raw_affiliation_strings":["Northrup Grumman, Atlanta, Georgia, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-4448-0822","affiliations":[{"raw_affiliation_string":"Northrup Grumman, Atlanta, Georgia, United States of America","institution_ids":["https://openalex.org/I2948394018"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085776274","display_name":"Anupama Shankar","orcid":"https://orcid.org/0000-0003-4453-818X"},"institutions":[{"id":"https://openalex.org/I1289490764","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12","country_code":"US","type":"funder","lineage":["https://openalex.org/I1289490764","https://openalex.org/I1299022934"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anupama Shankar","raw_affiliation_strings":["Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America"],"raw_orcid":"https://orcid.org/0000-0003-4453-818X","affiliations":[{"raw_affiliation_string":"Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America","institution_ids":["https://openalex.org/I1289490764"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014717502","display_name":"Jay Kim","orcid":"https://orcid.org/0000-0003-0790-7935"},"institutions":[{"id":"https://openalex.org/I2948394018","display_name":"Northrop Grumman (United States)","ror":"https://ror.org/05kewds18","country_code":"US","type":"company","lineage":["https://openalex.org/I2948394018"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jay Kim","raw_affiliation_strings":["Northrup Grumman, Atlanta, Georgia, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Northrup Grumman, Atlanta, Georgia, United States of America","institution_ids":["https://openalex.org/I2948394018"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108272388","display_name":"Sergey Knyazev","orcid":null},"institutions":[{"id":"https://openalex.org/I1281378812","display_name":"Oak Ridge Associated Universities","ror":"https://ror.org/0526p1y61","country_code":"US","type":"education","lineage":["https://openalex.org/I1281378812"]},{"id":"https://openalex.org/I1289490764","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12","country_code":"US","type":"funder","lineage":["https://openalex.org/I1289490764","https://openalex.org/I1299022934"]},{"id":"https://openalex.org/I181565077","display_name":"Georgia State University","ror":"https://ror.org/03qt6ba18","country_code":"US","type":"education","lineage":["https://openalex.org/I181565077"]},{"id":"https://openalex.org/I4389425366","display_name":"Oak Ridge Institute for Science and Education","ror":"https://ror.org/040vxhp34","country_code":null,"type":"education","lineage":["https://openalex.org/I1281378812","https://openalex.org/I1330989302","https://openalex.org/I4389425366"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sergey Knyazev","raw_affiliation_strings":["Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America","Department of Computer Science, Georgia State University, Atlanta, Georgia, United States of America","Oak Ridge Institute for Science and Education, Oak Ridge, Tennessee, United States of America"],"raw_orcid":"https://orcid.org/0000-0003-0385-1831","affiliations":[{"raw_affiliation_string":"Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America","institution_ids":["https://openalex.org/I1289490764"]},{"raw_affiliation_string":"Department of Computer Science, Georgia State University, Atlanta, Georgia, United States of America","institution_ids":["https://openalex.org/I181565077"]},{"raw_affiliation_string":"Oak Ridge Institute for Science and Education, Oak Ridge, Tennessee, United States of America","institution_ids":["https://openalex.org/I1281378812","https://openalex.org/I4389425366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063759983","display_name":"Roxana Cintr\u00f3n","orcid":"https://orcid.org/0000-0002-0765-1186"},"institutions":[{"id":"https://openalex.org/I1289490764","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12","country_code":"US","type":"funder","lineage":["https://openalex.org/I1289490764","https://openalex.org/I1299022934"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Roxana Cintron","raw_affiliation_strings":["Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-0765-1186","affiliations":[{"raw_affiliation_string":"Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America","institution_ids":["https://openalex.org/I1289490764"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005405338","display_name":"William M. Switzer","orcid":"https://orcid.org/0000-0003-4591-8731"},"institutions":[{"id":"https://openalex.org/I1289490764","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12","country_code":"US","type":"funder","lineage":["https://openalex.org/I1289490764","https://openalex.org/I1299022934"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"William M. Switzer","raw_affiliation_strings":["Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America"],"raw_orcid":"https://orcid.org/0000-0003-4591-8731","affiliations":[{"raw_affiliation_string":"Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America","institution_ids":["https://openalex.org/I1289490764"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5053874809"],"corresponding_institution_ids":["https://openalex.org/I1289490764"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":2.477,"has_fulltext":true,"cited_by_count":57,"citation_normalized_percentile":{"value":0.91345488,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"17","issue":"9","first_page":"e1009300","last_page":"e1009300"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11754","display_name":"SARS-CoV-2 detection and testing","score":0.986299991607666,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11754","display_name":"SARS-CoV-2 detection and testing","score":0.986299991607666,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11819","display_name":"Data-Driven Disease Surveillance","score":0.9829000234603882,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9466000199317932,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/javascript","display_name":"JavaScript","score":0.6862191557884216},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.6843655705451965},{"id":"https://openalex.org/keywords/contact-tracing","display_name":"Contact tracing","score":0.657234251499176},{"id":"https://openalex.org/keywords/usability","display_name":"Usability","score":0.6006498336791992},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5862119793891907},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.5580435991287231},{"id":"https://openalex.org/keywords/public-health","display_name":"Public health","score":0.5022969245910645},{"id":"https://openalex.org/keywords/confidentiality","display_name":"Confidentiality","score":0.47869327664375305},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.47370073199272156},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.46597597002983093},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.46270751953125},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.46165359020233154},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.44416847825050354},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4310227930545807},{"id":"https://openalex.org/keywords/computer-security","display_name":"Computer security","score":0.3176071047782898},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.24165785312652588},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.18824133276939392},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.1708844006061554},{"id":"https://openalex.org/keywords/infectious-disease","display_name":"Infectious disease (medical specialty)","score":0.13517796993255615}],"concepts":[{"id":"https://openalex.org/C544833334","wikidata":"https://www.wikidata.org/wiki/Q2005","display_name":"JavaScript","level":2,"score":0.6862191557884216},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.6843655705451965},{"id":"https://openalex.org/C113162765","wikidata":"https://www.wikidata.org/wiki/Q1128437","display_name":"Contact tracing","level":5,"score":0.657234251499176},{"id":"https://openalex.org/C170130773","wikidata":"https://www.wikidata.org/wiki/Q216378","display_name":"Usability","level":2,"score":0.6006498336791992},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5862119793891907},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.5580435991287231},{"id":"https://openalex.org/C138816342","wikidata":"https://www.wikidata.org/wiki/Q189603","display_name":"Public health","level":2,"score":0.5022969245910645},{"id":"https://openalex.org/C71745522","wikidata":"https://www.wikidata.org/wiki/Q2476929","display_name":"Confidentiality","level":2,"score":0.47869327664375305},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.47370073199272156},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.46597597002983093},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.46270751953125},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.46165359020233154},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.44416847825050354},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4310227930545807},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.3176071047782898},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.24165785312652588},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.18824133276939392},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.1708844006061554},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.13517796993255615},{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.0},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000078326","descriptor_name":"Data Visualization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000078326","descriptor_name":"Data Visualization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000078326","descriptor_name":"Data Visualization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002487","descriptor_name":"Centers for Disease Control and Prevention, U.S.","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002487","descriptor_name":"Centers for Disease Control and Prevention, U.S.","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002487","descriptor_name":"Centers for Disease Control and Prevention, U.S.","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003141","descriptor_name":"Communicable Diseases","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D003141","descriptor_name":"Communicable Diseases","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D003141","descriptor_name":"Communicable Diseases","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D004196","descriptor_name":"Disease Outbreaks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004196","descriptor_name":"Disease Outbreaks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004196","descriptor_name":"Disease Outbreaks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011634","descriptor_name":"Public Health","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D011634","descriptor_name":"Public Health","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D011634","descriptor_name":"Public Health","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014481","descriptor_name":"United States","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014481","descriptor_name":"United States","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014481","descriptor_name":"United States","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017720","descriptor_name":"Molecular Epidemiology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017720","descriptor_name":"Molecular Epidemiology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017720","descriptor_name":"Molecular Epidemiology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1371/journal.pcbi.1009300","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1009300","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1009300&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:34492010","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34492010","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:doaj.org/article:b0d84b739f454fc3a09ba949f1f97896","is_oa":true,"landing_page_url":"https://doaj.org/article/b0d84b739f454fc3a09ba949f1f97896","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 17, Iss 9, p e1009300 (2021)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:7384229","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC8491948","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:8491948","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8491948","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1009300","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1009300","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1009300&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.6800000071525574}],"awards":[],"funders":[{"id":"https://openalex.org/F4320332162","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12"},{"id":"https://openalex.org/F4320337422","display_name":"National Center for HIV/AIDS, Viral Hepatitis, STD, and TB Prevention","ror":"https://ror.org/01wjn2x92"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3198676969.pdf","grobid_xml":"https://content.openalex.org/works/W3198676969.grobid-xml"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W229097380","https://openalex.org/W1483247593","https://openalex.org/W1965680834","https://openalex.org/W2011301426","https://openalex.org/W2074774389","https://openalex.org/W2097058024","https://openalex.org/W2098068679","https://openalex.org/W2110899053","https://openalex.org/W2125910575","https://openalex.org/W2132022337","https://openalex.org/W2144775551","https://openalex.org/W2151409320","https://openalex.org/W2155142785","https://openalex.org/W2162000763","https://openalex.org/W2216780858","https://openalex.org/W2310259903","https://openalex.org/W2560057613","https://openalex.org/W2567173904","https://openalex.org/W2571541240","https://openalex.org/W2764031498","https://openalex.org/W2772837219","https://openalex.org/W2793085614","https://openalex.org/W2885293053","https://openalex.org/W2921377123","https://openalex.org/W2952045272","https://openalex.org/W2986846296","https://openalex.org/W3002685395","https://openalex.org/W3002816332","https://openalex.org/W3010739279","https://openalex.org/W3086380255","https://openalex.org/W3106561465","https://openalex.org/W3118796209","https://openalex.org/W4250234857","https://openalex.org/W6674561533","https://openalex.org/W6697974936"],"related_works":["https://openalex.org/W2795601048","https://openalex.org/W2403324299","https://openalex.org/W2621177934","https://openalex.org/W4286287737","https://openalex.org/W1844100222","https://openalex.org/W3009852816","https://openalex.org/W2513223212","https://openalex.org/W2169602156","https://openalex.org/W42576273","https://openalex.org/W4366451129"],"abstract_inverted_index":{"Outbreak":[0],"investigations":[1],"use":[2,14],"data":[3,16,40,63,133],"from":[4,17,41,134],"interviews,":[5],"healthcare":[6],"providers,":[7],"laboratories":[8],"and":[9,32,37,65,83,104,131,148,157],"surveillance":[10],"systems.":[11],"However,":[12],"integrated":[13],"of":[15,23,39,99,122,126,137],"multiple":[18,42],"sources":[19,43],"requires":[20],"a":[21,72,106],"patchwork":[22],"software":[24],"that":[25,78,113],"present":[26],"challenges":[27],"in":[28,67,80,124,139,142],"usability,":[29],"interoperability,":[30],"confidentiality,":[31],"cost.":[33],"Rapid":[34],"integration,":[35],"visualization":[36],"analysis":[38,98],"can":[44,160],"guide":[45],"effective":[46],"public":[47,56],"health":[48,57],"interventions.":[49],"We":[50,116],"developed":[51,147],"MicrobeTrace":[52,70,123,145],"to":[53,62,109],"facilitate":[54],"rapid":[55],"responses":[58],"by":[59,129,151],"overcoming":[60],"barriers":[61],"integration":[64],"exploration":[66],"molecular":[68],"epidemiology.":[69],"is":[71,146,168],"web-based,":[73],"client-side,":[74],"JavaScript":[75],"application":[76],"(https://microbetrace.cdc.gov)":[77],"runs":[79],"Chromium-based":[81],"browsers":[82],"remains":[84],"fully":[85],"operational":[86],"without":[87],"an":[88,135],"internet":[89],"connection.":[90],"Using":[91],"publicly":[92],"available":[93,169],"data,":[94],"we":[95],"demonstrate":[96],"the":[97,119,152],"viral":[100],"genetic":[101],"distance":[102],"networks":[103],"introduce":[105],"novel":[107],"approach":[108],"minimum":[110],"spanning":[111],"trees":[112],"simplifies":[114],"results.":[115],"also":[117],"illustrate":[118],"potential":[120],"utility":[121],"support":[125],"contact":[127],"tracing":[128],"analyzing":[130],"displaying":[132],"outbreak":[136],"SARS-CoV-2":[138],"South":[140],"Korea":[141],"early":[143],"2020.":[144],"actively":[149],"maintained":[150],"Centers":[153],"for":[154,163],"Disease":[155],"Control":[156],"Prevention.":[158],"Users":[159],"email":[161],"microbetrace@cdc.gov":[162],"support.":[164],"The":[165],"source":[166],"code":[167],"at":[170],"https://github.com/cdcgov/microbetrace.":[171]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":16},{"year":2024,"cited_by_count":14},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":10},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
